Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0013081

Physical Location & Seq

Genomic Coordinates Forward (+)

14043056 .. 14045126

Gene Structure 2071 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g16110.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGCTTTCTCTTCCTTTTCATACTACAACACTTTGTGGATTCTGATCAGTAAACTCAAAATGGCTTTGTTTCTTTGCTCGTTTCTCTTCCTTCTGGTATCTTCTGCTACCGCTTGTTATCGGTGTGTGCATCAAACCAAGGCAGCTTACTTCTCCAAAGCCCCTGCACTTTCTTCTGGGGCTTGTGGGTATGGTTCTTTAGCTTTGGGACTTAGTGGTGGACACCTGGCTGCTGCTGTGCCTTCAATTTATAAAGATGGAGCTGGTTGTGGTTCATGTTTTCAGATAAGATGTAAGAATGCAACACTGTGTACAAAACAAGGGACTAAAGTGATCACAAGTGATCTCAATCACAATAACCAAACAGATTTTGTTCTAAGCAGCAGAGCTTTCATGGCCATGGCTCAAAAGGGTTTGGGGCAGGACATTTTGAAACATGGAATTGTTGATGTGGAGTATAAGAGGGTGCCCTGTGAATACAAGAACCAAAACTTAGCCTTGCGTGTGGAAGAATCAAGCCAGAAGCCACATTACTTAGCAGTCAAAGTTTTATACCAAGGTGGTCAGACAGAGATAGTAGCCATTGATGTTGCTCAGGTTGGCTCTTCTAATTGGAGTTTCCTAACTCGAAATTACGGGGCAGTATGGGACACCAGTAGGGTTCCGGCTGGAGCGCTGCAATTCCGGTTTGTGGTGACAGGCGGGTTTGATGGGAAAATGGTTTGGGCAAAGAATGTGCTTCCTGCTGACTGGAAGCCTGGGATGGTATATGACACAAAGGTTCAGATCAGTGATATTGCTCAAGAGGGTTGCTCTCCTTGTGATGATGGGATTTGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0005911 GO:0009505 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

281

Amino Acids

30.5

Weight (kDa)

8.89

Isoelectric Point (pI)

36.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	78 - 153	7.1e-11	Lytic transglycolase
Expansin_C	PF01357	167 - 248	1.2e-19	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45970 AT3G45970 AT4G38400
fragaria_vesca	FvH4_2g16110
malus_domestica	MD05G1130300.v1.1 MD10G1133200.v1.1
prunus_persica	Prupe.8G174500_v2.0.a1
pyrus_communis	pycom05g12690 pycom10g11500
rosa_chinensis	RchiOBHm_Chr6g0279781
rosa_laevigata	RLG00000013120
rosa_multiflora	Rmu_sc0001719.1_g000021
rosa_roxburghii	Rroxscaffold_7G00188660
rosa_rugosa	Rorug06G0128000
rosa_samantha	Rh6AG236200 Rh6BG240400 Rh6DG234100
rosa_wichuraiana	Rw6G020590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	252
AccB1I	GGYRCC	1 cut(s)	466
AciI	CCGC	2 cut(s)	111, 702
AcoI	YGGCCR	1 cut(s)	396
AdeI	CACNNNGTG	1 cut(s)	36
AfaI	GTAC	1 cut(s)	313
AfeI	AGCGCT	1 cut(s)	675
AfiI	CCNNNNNNNGG	1 cut(s)	691
AgsI	TTSAA	2 cut(s)	246, 433
AjnI	CCWGG	2 cut(s)	225, 757
AluBI	AGCT	4 cut(s)	146, 203, 263, 389
AluI	AGCT	4 cut(s)	146, 203, 263, 389
Aor51HI	AGCGCT	1 cut(s)	675
AoxI	GGCC	1 cut(s)	396
ApeKI	GCWGC	5 cut(s)	143, 230, 233, 381, 676
AspLEI	GCGC	1 cut(s)	676
AsuHPI	GGTGA	1 cut(s)	706
BaeGI	GKGCMC	1 cut(s)	471
BalI	TGGCCA	1 cut(s)	398
BanI	GGYRCC	1 cut(s)	466
BarI	GAAGNNNNNNTAC	2 cut(s)	515, 547
BbvI	GCAGC	5 cut(s)	155, 217, 220, 393, 663
BccI	CCATC	4 cut(s)	251, 704, 757, 821
BciT130I	CCWGG	2 cut(s)	227, 759
BclI	TGATCA	2 cut(s)	45, 333
BfoI	RGCGCY	1 cut(s)	677
BisI	GCNGC	5 cut(s)	144, 231, 234, 382, 677
BlsI	GCNGC	5 cut(s)	145, 232, 235, 383, 678
Bme1390I	CCNGG	2 cut(s)	227, 759
BmiI	GGNNCC	2 cut(s)	468, 663
BmrFI	CCNGG	2 cut(s)	227, 759
BmsI	GCATC	1 cut(s)	139
BplI	GAGNNNNNCTC	2 cut(s)	797, 829
BpmI	CTGGAG	1 cut(s)	690
Bpu10I	CCTNAGC	1 cut(s)	594
BpuEI	CTTGAG	1 cut(s)	786
BsaBI	GATNNNNATC	2 cut(s)	44, 348
BsaJI	CCNNGG	4 cut(s)	138, 399, 556, 758
BsaWI	WCCGGW	1 cut(s)	684
Bsc4I	CCNNNNNNNGG	1 cut(s)	691
Bse1I	ACTGG	2 cut(s)	654, 755
Bse8I	GATNNNNATC	2 cut(s)	44, 348
BseBI	CCWGG	2 cut(s)	227, 759
BseDI	CCNNGG	4 cut(s)	138, 399, 556, 758
BseGI	GGATG	1 cut(s)	768
BseJI	GATNNNNATC	2 cut(s)	44, 348
BseLI	CCNNNNNNNGG	1 cut(s)	691
BseMII	CTCAG	1 cut(s)	608
BseNI	ACTGG	2 cut(s)	654, 755
BseSI	GKGCMC	1 cut(s)	471
BseXI	GCAGC	5 cut(s)	155, 217, 220, 393, 663
BsgI	GTGCAG	1 cut(s)	150
BshFI	GGCC	1 cut(s)	398
BshNI	GGYRCC	1 cut(s)	466
BsiSI	CCGG	2 cut(s)	665, 685
BslFI	GGGAC	3 cut(s)	222, 337, 662
BslI	CCNNNNNNNGG	1 cut(s)	691
BsmFI	GGGAC	3 cut(s)	222, 337, 662
BsmI	GAATGC	1 cut(s)	304
BsnI	GGCC	1 cut(s)	398
Bsp1286I	GDGCHC	1 cut(s)	471
Bsp1407I	TGTACA	1 cut(s)	311
Bsp143I	GATC	4 cut(s)	45, 333, 343, 786
Bsp19I	CCATGG	1 cut(s)	399
BspACI	CCGC	2 cut(s)	111, 702
BspANI	GGCC	1 cut(s)	398
BspCNI	CTCAG	1 cut(s)	607
BspLI	GGNNCC	2 cut(s)	468, 663
BspQI	GCTCTTC	1 cut(s)	610
BspT107I	GGYRCC	1 cut(s)	466
BsrGI	TGTACA	1 cut(s)	311
BsrI	ACTGG	2 cut(s)	654, 755
BssECI	CCNNGG	4 cut(s)	138, 399, 556, 758
BssMI	GATC	4 cut(s)	45, 333, 343, 786
BssT1I	CCWWGG	3 cut(s)	138, 399, 556
Bst2UI	CCWGG	2 cut(s)	227, 759
Bst4CI	ACNGT	1 cut(s)	309
Bst6I	CTCTTC	3 cut(s)	16, 92, 610
BstAUI	TGTACA	1 cut(s)	311
BstDEI	CTNAG	5 cut(s)	212, 377, 493, 535, 594
BstDSI	CCRYGG	1 cut(s)	399
BstF5I	GGATG	1 cut(s)	768
BstH2I	RGCGCY	1 cut(s)	677
BstHHI	GCGC	1 cut(s)	676
BstKTI	GATC	4 cut(s)	48, 336, 346, 789
BstMBI	GATC	4 cut(s)	45, 333, 343, 786
BstMWI	GCNNNNNNNGC	1 cut(s)	395
BstNI	CCWGG	2 cut(s)	227, 759
BstSCI	CCNGG	2 cut(s)	225, 757
BstSLI	GKGCMC	1 cut(s)	471
BstV1I	GCAGC	5 cut(s)	155, 217, 220, 393, 663
BsuRI	GGCC	1 cut(s)	398
BtgI	CCRYGG	1 cut(s)	399
BtsCI	GGATG	1 cut(s)	768
BtsIMutI	CAGTG	2 cut(s)	305, 796
CfoI	GCGC	1 cut(s)	676
Csp6I	GTAC	1 cut(s)	312
CviAII	CATG	4 cut(s)	276, 394, 400, 437
CviQI	GTAC	1 cut(s)	312
DdeI	CTNAG	5 cut(s)	212, 377, 493, 535, 594
DpnI	GATC	4 cut(s)	47, 335, 345, 788
DpnII	GATC	4 cut(s)	45, 333, 343, 786
DraIII	CACNNNGTG	1 cut(s)	36
EaeI	YGGCCR	1 cut(s)	396
Eam1104I	CTCTTC	3 cut(s)	16, 92, 610
EarI	CTCTTC	3 cut(s)	16, 92, 610
Eco130I	CCWWGG	3 cut(s)	138, 399, 556
Eco47III	AGCGCT	1 cut(s)	675
EcoRII	CCWGG	2 cut(s)	225, 757
EcoT14I	CCWWGG	3 cut(s)	138, 399, 556
ErhI	CCWWGG	3 cut(s)	138, 399, 556
FaeI	CATG	4 cut(s)	279, 397, 403, 440
FaqI	GGGAC	3 cut(s)	222, 337, 662
FatI	CATG	4 cut(s)	275, 393, 399, 436
FauI	CCCGC	1 cut(s)	695
FbaI	TGATCA	2 cut(s)	45, 333
Fnu4HI	GCNGC	5 cut(s)	144, 231, 234, 382, 677
FokI	GGATG	1 cut(s)	775
Fsp4HI	GCNGC	5 cut(s)	144, 231, 234, 382, 677
GlaI	GCGC	1 cut(s)	675
GluI	GCNGC	5 cut(s)	144, 231, 234, 382, 677
GsuI	CTGGAG	1 cut(s)	690
HaeII	RGCGCY	1 cut(s)	677
HaeIII	GGCC	1 cut(s)	398
HapII	CCGG	2 cut(s)	665, 685
HhaI	GCGC	1 cut(s)	676
Hin1II	CATG	4 cut(s)	279, 397, 403, 440
Hin6I	GCGC	1 cut(s)	674
HinP1I	GCGC	1 cut(s)	674
HinfI	GANTC	2 cut(s)	40, 512
HpaII	CCGG	2 cut(s)	665, 685
HphI	GGTGA	1 cut(s)	706
Hpy166II	GTNNAC	3 cut(s)	53, 221, 312
Hpy188I	TCNGA	4 cut(s)	45, 285, 567, 786
Hpy188III	TCNNGA	1 cut(s)	803
Hpy8I	GTNNAC	3 cut(s)	53, 221, 312
HpyAV	CCTTC	2 cut(s)	101, 252
HpyCH4III	ACNGT	1 cut(s)	309
HpyCH4V	TGCA	4 cut(s)	130, 167, 302, 679
HpyF10VI	GCNNNNNNNGC	1 cut(s)	395
HpyF3I	CTNAG	5 cut(s)	212, 377, 493, 535, 594
Hsp92II	CATG	4 cut(s)	279, 397, 403, 440
HspAI	GCGC	1 cut(s)	674
Ksp22I	TGATCA	2 cut(s)	45, 333
Kzo9I	GATC	4 cut(s)	45, 333, 343, 786
LguI	GCTCTTC	1 cut(s)	610
LmnI	GCTCC	2 cut(s)	260, 671
Lsp1109I	GCAGC	5 cut(s)	155, 217, 220, 393, 663
LweI	GCATC	1 cut(s)	139
MaeIII	GTNAC	1 cut(s)	694
MalI	GATC	4 cut(s)	47, 335, 345, 788
MboI	GATC	4 cut(s)	45, 333, 343, 786
MboII	GAAGA	6 cut(s)	3, 79, 93, 165, 521, 597
MhlI	GDGCHC	1 cut(s)	471
MlsI	TGGCCA	1 cut(s)	398
MluCI	AATT	5 cut(s)	246, 441, 610, 631, 680
MluNI	TGGCCA	1 cut(s)	398
MnlI	CCTC	2 cut(s)	456, 799
Mox20I	TGGCCA	1 cut(s)	398
MscI	TGGCCA	1 cut(s)	398
MslI	CAYNNNNRTG	1 cut(s)	398
Msp20I	TGGCCA	1 cut(s)	398
MspI	CCGG	2 cut(s)	665, 685
MspR9I	CCNGG	2 cut(s)	227, 759
Mva1269I	GAATGC	1 cut(s)	304
MvaI	CCWGG	2 cut(s)	227, 759
MwoI	GCNNNNNNNGC	1 cut(s)	395
NcoI	CCATGG	1 cut(s)	399
NdeII	GATC	4 cut(s)	45, 333, 343, 786
NlaIII	CATG	4 cut(s)	279, 397, 403, 440
NlaIV	GGNNCC	2 cut(s)	468, 663
NmuCI	GTSAC	1 cut(s)	694
PciSI	GCTCTTC	1 cut(s)	610
PctI	GAATGC	1 cut(s)	304
PfeI	GAWTC	2 cut(s)	40, 512
PkrI	GCNGC	5 cut(s)	145, 232, 235, 383, 678
PsiI	TTATAA	1 cut(s)	252
Psp6I	CCWGG	2 cut(s)	225, 757
PspGI	CCWGG	2 cut(s)	225, 757
PspN4I	GGNNCC	2 cut(s)	468, 663
RsaI	GTAC	1 cut(s)	313
RsaNI	GTAC	1 cut(s)	312
RseI	CAYNNNNRTG	1 cut(s)	398
SapI	GCTCTTC	1 cut(s)	610
SatI	GCNGC	5 cut(s)	144, 231, 234, 382, 677
Sau3AI	GATC	4 cut(s)	45, 333, 343, 786
ScrFI	CCNGG	2 cut(s)	227, 759
SduI	GDGCHC	1 cut(s)	471
SetI	ASST	8 cut(s)	148, 205, 228, 265, 391, 562, 600, 783
SfaNI	GCATC	1 cut(s)	139
SmiMI	CAYNNNNRTG	1 cut(s)	398
SmlI	CTYRAG	1 cut(s)	801
SmoI	CTYRAG	1 cut(s)	801
Sse9I	AATT	5 cut(s)	246, 441, 610, 631, 680
SsiI	CCGC	2 cut(s)	111, 702
StyD4I	CCNGG	2 cut(s)	225, 757
StyI	CCWWGG	3 cut(s)	138, 399, 556
TaaI	ACNGT	1 cut(s)	309
TaqI	TCGA	1 cut(s)	628
TasI	AATT	5 cut(s)	246, 441, 610, 631, 680
TatI	WGTACW	1 cut(s)	311
TfiI	GAWTC	2 cut(s)	40, 512
TscAI	CASTG	2 cut(s)	312, 796
TseFI	GTSAC	1 cut(s)	694
TseI	GCWGC	5 cut(s)	143, 230, 233, 381, 676
Tsp45I	GTSAC	1 cut(s)	694
TspDTI	ATGAA	3 cut(s)	9, 264, 382
TspRI	CASTG	2 cut(s)	312, 796

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.