Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013081

Physical Location & Seq

Genomic Coordinates Forward (+)

42908370 .. 42910351

Gene Structure 1982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25089

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGTTTTCTCTTCCTTTTCATCCTACTACACTTTGTGGATTCTGATCAAAATGGCTTTGTTTCTTTGCACATTCCTCTTCTTTCTCGTCTCCTCTGCTACTGCCTGTGATCGCTGTGTGCATCAAACCAAGGCAGCTTACTTCTCCAAAGCCGCTGCACTTTCTTCTGGGGCTTGTGGGTATGGTTCTTTAGCTTTGGGACTTAGTGGTGGACACCTTGCTGCTGCTGTGCCTTCAATTTATAAAGATGGAGCTGGTTGTGGTTCATGTTTTCAGATAAGATGTAAGAATGCAACACTCTGTACAAAACAAGGGACTAGAGTGATCACAAGTGATCTCAATCACAATAACCAAACAGATTTTGTTCTAAGCAGCAGAGCTTTCATGGCCATGGCTCAAAAGGGTTTGGGCCAGGACATTTTGAAACATGGAATTGTGGATGTGGAGTATAAAAGGGTACCATGTGAATACAAGAACCAAAACTTAGCCTTACGTGTGGAAGAATCAAGCAAGAAGCCACATTACTTAGCAGTCAAAGTTCTATACCAAGGTGGTCAGACAGAGATAGTAGCCATTGATGTTGCTCAGGTTGGTTCTTCTAACTGGAGTTTCCTGACTCGAAATTACGGGGCAGTATGGGACACCAGTAGGGTTCCGACTGGAGCGCTGCAATTCCGGTTCGTGGTGACTGGCGGGTTCGATGGAAAGATGGTTTGGGCAAAGAATGTGCTTCCTGCTGACTGGAAGCCAGGGATGGCATATGACACAAAGGTTCAAATCAGTGATATTGCACAGGAGGGTTGCTCTCCGTGTGATGATGGGATTTGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0005911 GO:0009505 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

277

Amino Acids

30.18

Weight (kDa)

8.8

Isoelectric Point (pI)

38.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	75 - 150	1.2e-10	Lytic transglycolase
Expansin_C	PF01357	164 - 245	7.8e-20	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45970 AT3G45970 AT4G38400
fragaria_vesca	FvH4_2g16110
malus_domestica	MD05G1130300.v1.1 MD10G1133200.v1.1
prunus_persica	Prupe.8G174500_v2.0.a1
pyrus_communis	pycom05g12690 pycom10g11500
rosa_chinensis	RchiOBHm_Chr6g0279781
rosa_laevigata	RLG00000013120
rosa_multiflora	Rmu_sc0001719.1_g000021
rosa_roxburghii	Rroxscaffold_7G00188660
rosa_rugosa	Rorug06G0128000
rosa_samantha	Rh6AG236200 Rh6BG240400 Rh6DG234100
rosa_wichuraiana	Rw6G020590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	243
Acc65I	GGTACC	1 cut(s)	457
AccB1I	GGYRCC	1 cut(s)	457
AciI	CCGC	2 cut(s)	153, 693
AcoI	YGGCCR	1 cut(s)	387
AdeI	CACNNNGTG	1 cut(s)	36
AfaI	GTAC	2 cut(s)	304, 459
AfeI	AGCGCT	1 cut(s)	666
AfiI	CCNNNNNNNGG	1 cut(s)	682
AflIII	ACRYGT	1 cut(s)	493
AgsI	TTSAA	3 cut(s)	237, 424, 776
AjnI	CCWGG	2 cut(s)	411, 748
AjuI	GAANNNNNNNTTGG	2 cut(s)	697, 729
AluBI	AGCT	4 cut(s)	137, 194, 254, 380
AluI	AGCT	4 cut(s)	137, 194, 254, 380
Alw26I	GTCTC	1 cut(s)	94
Aor51HI	AGCGCT	1 cut(s)	666
AoxI	GGCC	2 cut(s)	387, 409
ApeKI	GCWGC	6 cut(s)	134, 155, 221, 224, 372, 667
Asp718I	GGTACC	1 cut(s)	457
AspLEI	GCGC	1 cut(s)	667
AspS9I	GGNCC	1 cut(s)	409
AsuHPI	GGTGA	1 cut(s)	697
BalI	TGGCCA	1 cut(s)	389
BanI	GGYRCC	1 cut(s)	457
BarI	GAAGNNNNNNTAC	2 cut(s)	506, 538
BbvI	GCAGC	6 cut(s)	142, 146, 208, 211, 384, 654
BccI	CCATC	5 cut(s)	242, 695, 703, 748, 812
BciT130I	CCWGG	2 cut(s)	413, 750
BclI	TGATCA	2 cut(s)	45, 324
BcoDI	GTCTC	1 cut(s)	94
BfaI	CTAG	1 cut(s)	318
BfoI	RGCGCY	1 cut(s)	668
BisI	GCNGC	7 cut(s)	135, 153, 156, 222, 225, 373, 668
BlsI	GCNGC	7 cut(s)	136, 154, 157, 223, 226, 374, 669
Bme1390I	CCNGG	2 cut(s)	413, 750
BmgT120I	GGNCC	1 cut(s)	409
BmiI	GGNNCC	2 cut(s)	459, 654
BmrFI	CCNGG	2 cut(s)	413, 750
BmsI	GCATC	1 cut(s)	130
BplI	GAGNNNNNCTC	2 cut(s)	788, 820
BpmI	CTGGAG	2 cut(s)	625, 681
Bpu10I	CCTNAGC	1 cut(s)	585
BsaAI	YACGTR	1 cut(s)	494
BsaBI	GATNNNNATC	2 cut(s)	44, 339
BsaJI	CCNNGG	4 cut(s)	129, 390, 547, 749
BsaWI	WCCGGW	1 cut(s)	675
Bsc4I	CCNNNNNNNGG	1 cut(s)	682
Bse1I	ACTGG	5 cut(s)	608, 645, 664, 694, 746
Bse8I	GATNNNNATC	2 cut(s)	44, 339
BseBI	CCWGG	2 cut(s)	413, 750
BseDI	CCNNGG	4 cut(s)	129, 390, 547, 749
BseGI	GGATG	3 cut(s)	20, 445, 759
BseJI	GATNNNNATC	2 cut(s)	44, 339
BseLI	CCNNNNNNNGG	1 cut(s)	682
BseMII	CTCAG	1 cut(s)	599
BseNI	ACTGG	5 cut(s)	608, 645, 664, 694, 746
BseRI	GAGGAG	1 cut(s)	82
BseXI	GCAGC	6 cut(s)	142, 146, 208, 211, 384, 654
BsgI	GTGCAG	1 cut(s)	141
BshFI	GGCC	2 cut(s)	389, 411
BshNI	GGYRCC	1 cut(s)	457
BsiSI	CCGG	1 cut(s)	676
BslFI	GGGAC	3 cut(s)	213, 328, 653
BslI	CCNNNNNNNGG	1 cut(s)	682
BsmAI	GTCTC	1 cut(s)	94
BsmBI	CGTCTC	1 cut(s)	94
BsmFI	GGGAC	3 cut(s)	213, 328, 653
BsmI	GAATGC	1 cut(s)	295
BsnI	GGCC	2 cut(s)	389, 411
Bsp1407I	TGTACA	1 cut(s)	302
Bsp143I	GATC	4 cut(s)	45, 109, 324, 334
Bsp19I	CCATGG	1 cut(s)	390
BspACI	CCGC	2 cut(s)	153, 693
BspANI	GGCC	2 cut(s)	389, 411
BspCNI	CTCAG	1 cut(s)	598
BspLI	GGNNCC	2 cut(s)	459, 654
BspT107I	GGYRCC	1 cut(s)	457
BsrGI	TGTACA	1 cut(s)	302
BsrI	ACTGG	5 cut(s)	608, 645, 664, 694, 746
BssECI	CCNNGG	4 cut(s)	129, 390, 547, 749
BssMI	GATC	4 cut(s)	45, 109, 324, 334
BssT1I	CCWWGG	3 cut(s)	129, 390, 547
Bst2UI	CCWGG	2 cut(s)	413, 750
Bst6I	CTCTTC	2 cut(s)	16, 83
BstAUI	TGTACA	1 cut(s)	302
BstBAI	YACGTR	1 cut(s)	494
BstDEI	CTNAG	5 cut(s)	203, 368, 484, 526, 585
BstDSI	CCRYGG	1 cut(s)	390
BstF5I	GGATG	3 cut(s)	20, 445, 759
BstH2I	RGCGCY	1 cut(s)	668
BstHHI	GCGC	1 cut(s)	667
BstKTI	GATC	4 cut(s)	48, 112, 327, 337
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	4 cut(s)	45, 109, 324, 334
BstMWI	GCNNNNNNNGC	1 cut(s)	386
BstNI	CCWGG	2 cut(s)	413, 750
BstSCI	CCNGG	2 cut(s)	411, 748
BstV1I	GCAGC	6 cut(s)	142, 146, 208, 211, 384, 654
BsuRI	GGCC	2 cut(s)	389, 411
BtgI	CCRYGG	1 cut(s)	390
BtsCI	GGATG	3 cut(s)	20, 445, 759
BtsIMutI	CAGTG	1 cut(s)	787
CfoI	GCGC	1 cut(s)	667
Cfr13I	GGNCC	1 cut(s)	409
Csp6I	GTAC	2 cut(s)	303, 458
CviAII	CATG	5 cut(s)	267, 385, 391, 428, 462
CviQI	GTAC	2 cut(s)	303, 458
DdeI	CTNAG	5 cut(s)	203, 368, 484, 526, 585
DpnI	GATC	4 cut(s)	47, 111, 326, 336
DpnII	GATC	4 cut(s)	45, 109, 324, 334
DraIII	CACNNNGTG	1 cut(s)	36
EaeI	YGGCCR	1 cut(s)	387
Eam1104I	CTCTTC	2 cut(s)	16, 83
EarI	CTCTTC	2 cut(s)	16, 83
Eco130I	CCWWGG	3 cut(s)	129, 390, 547
Eco47III	AGCGCT	1 cut(s)	666
EcoRII	CCWGG	2 cut(s)	411, 748
EcoT14I	CCWWGG	3 cut(s)	129, 390, 547
ErhI	CCWWGG	3 cut(s)	129, 390, 547
Esp3I	CGTCTC	1 cut(s)	94
FaeI	CATG	5 cut(s)	270, 388, 394, 431, 465
FaqI	GGGAC	3 cut(s)	213, 328, 653
FatI	CATG	5 cut(s)	266, 384, 390, 427, 461
FauI	CCCGC	1 cut(s)	686
FauNDI	CATATG	1 cut(s)	760
FbaI	TGATCA	2 cut(s)	45, 324
Fnu4HI	GCNGC	7 cut(s)	135, 153, 156, 222, 225, 373, 668
FokI	GGATG	3 cut(s)	7, 452, 766
Fsp4HI	GCNGC	7 cut(s)	135, 153, 156, 222, 225, 373, 668
FspBI	CTAG	1 cut(s)	318
GlaI	GCGC	1 cut(s)	666
GluI	GCNGC	7 cut(s)	135, 153, 156, 222, 225, 373, 668
GsuI	CTGGAG	2 cut(s)	625, 681
HaeII	RGCGCY	1 cut(s)	668
HaeIII	GGCC	2 cut(s)	389, 411
HapII	CCGG	1 cut(s)	676
HhaI	GCGC	1 cut(s)	667
Hin1II	CATG	5 cut(s)	270, 388, 394, 431, 465
Hin6I	GCGC	1 cut(s)	665
HinP1I	GCGC	1 cut(s)	665
HinfI	GANTC	3 cut(s)	40, 503, 616
HpaII	CCGG	1 cut(s)	676
HphI	GGTGA	1 cut(s)	697
Hpy166II	GTNNAC	1 cut(s)	212
Hpy188I	TCNGA	4 cut(s)	45, 276, 558, 657
Hpy188III	TCNNGA	1 cut(s)	613
Hpy8I	GTNNAC	1 cut(s)	212
HpyAV	CCTTC	1 cut(s)	243
HpyCH4IV	ACGT	1 cut(s)	493
HpyCH4V	TGCA	6 cut(s)	69, 121, 158, 293, 670, 791
HpyF10VI	GCNNNNNNNGC	1 cut(s)	386
HpyF3I	CTNAG	5 cut(s)	203, 368, 484, 526, 585
HpySE526I	ACGT	1 cut(s)	493
Hsp92II	CATG	5 cut(s)	270, 388, 394, 431, 465
HspAI	GCGC	1 cut(s)	665
KpnI	GGTACC	1 cut(s)	461
Ksp22I	TGATCA	2 cut(s)	45, 324
Kzo9I	GATC	4 cut(s)	45, 109, 324, 334
LmnI	GCTCC	2 cut(s)	251, 662
Lsp1109I	GCAGC	6 cut(s)	142, 146, 208, 211, 384, 654
LweI	GCATC	1 cut(s)	130
MaeI	CTAG	1 cut(s)	318
MaeII	ACGT	1 cut(s)	493
MaeIII	GTNAC	1 cut(s)	685
MalI	GATC	4 cut(s)	47, 111, 326, 336
MboI	GATC	4 cut(s)	45, 109, 324, 334
MboII	GAAGA	5 cut(s)	3, 70, 156, 512, 588
MlsI	TGGCCA	1 cut(s)	389
MluCI	AATT	4 cut(s)	237, 432, 622, 671
MluNI	TGGCCA	1 cut(s)	389
MlyI	GAGTC	1 cut(s)	610
MmeI	TCCRAC	1 cut(s)	680
MnlI	CCTC	3 cut(s)	86, 103, 790
Mox20I	TGGCCA	1 cut(s)	389
MscI	TGGCCA	1 cut(s)	389
MslI	CAYNNNNRTG	1 cut(s)	389
Msp20I	TGGCCA	1 cut(s)	389
MspA1I	CMGCKG	1 cut(s)	155
MspI	CCGG	1 cut(s)	676
MspR9I	CCNGG	2 cut(s)	413, 750
Mva1269I	GAATGC	1 cut(s)	295
MvaI	CCWGG	2 cut(s)	413, 750
MwoI	GCNNNNNNNGC	1 cut(s)	386
NcoI	CCATGG	1 cut(s)	390
NdeI	CATATG	1 cut(s)	760
NdeII	GATC	4 cut(s)	45, 109, 324, 334
NlaIII	CATG	5 cut(s)	270, 388, 394, 431, 465
NlaIV	GGNNCC	2 cut(s)	459, 654
NmuCI	GTSAC	1 cut(s)	685
PctI	GAATGC	1 cut(s)	295
PfeI	GAWTC	2 cut(s)	40, 503
PkrI	GCNGC	7 cut(s)	136, 154, 157, 223, 226, 374, 669
PleI	GAGTC	1 cut(s)	610
PpsI	GAGTC	1 cut(s)	610
Ppu21I	YACGTR	1 cut(s)	494
PsiI	TTATAA	1 cut(s)	243
Psp6I	CCWGG	2 cut(s)	411, 748
PspGI	CCWGG	2 cut(s)	411, 748
PspN4I	GGNNCC	2 cut(s)	459, 654
PspPI	GGNCC	1 cut(s)	409
RsaI	GTAC	2 cut(s)	304, 459
RsaNI	GTAC	2 cut(s)	303, 458
RseI	CAYNNNNRTG	1 cut(s)	389
SatI	GCNGC	7 cut(s)	135, 153, 156, 222, 225, 373, 668
Sau3AI	GATC	4 cut(s)	45, 109, 324, 334
Sau96I	GGNCC	1 cut(s)	409
SchI	GAGTC	1 cut(s)	610
ScrFI	CCNGG	2 cut(s)	413, 750
SetI	ASST	9 cut(s)	139, 196, 219, 256, 382, 496, 553, 591, 774
SfaNI	GCATC	1 cut(s)	130
SmiMI	CAYNNNNRTG	1 cut(s)	389
Sse9I	AATT	4 cut(s)	237, 432, 622, 671
SsiI	CCGC	2 cut(s)	153, 693
SspMI	CTAG	1 cut(s)	318
StyD4I	CCNGG	2 cut(s)	411, 748
StyI	CCWWGG	3 cut(s)	129, 390, 547
TaiI	ACGT	1 cut(s)	496
TaqI	TCGA	2 cut(s)	619, 699
TasI	AATT	4 cut(s)	237, 432, 622, 671
TatI	WGTACW	1 cut(s)	302
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	2 cut(s)	40, 503
TscAI	CASTG	1 cut(s)	787
TseFI	GTSAC	1 cut(s)	685
TseI	GCWGC	6 cut(s)	134, 155, 221, 224, 372, 667
Tsp45I	GTSAC	1 cut(s)	685
TspDTI	ATGAA	3 cut(s)	9, 255, 373
TspGWI	ACGGA	1 cut(s)	798
TspRI	CASTG	1 cut(s)	787
XspI	CTAG	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.