Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0013081

Physical Location & Seq

Genomic Coordinates Forward (+)

41649345 .. 41650837

Gene Structure 1493 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG234100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGCTTTGTTTCTTTGCACATTCCTCTTCTTTCTCGTCTCCTCTGCTACTGCCTGTGATCGCTGTGTGCATCAAACCAAGGCAGCTTACTTCTCCAAAGCCGCTGCACTTTCTTCTGGGGCTTGTGGGTATGGTTCTTTAGCTTTGGGACTTAGTGGTGGACACCTTGCTGCTGCTGTGCCTTCAATTTATAAAGATGGAGCTGGTTGTGGTTCATGTTTTCAGATAAGATGTAAGAATGCAACACTCTGTACAAAACAAGGGACTAGAGTGATCACAAGTGATCTCAATCACAATAACCAAACAGATTTTGTTCTAAGCAGCAGAGCTTTCATGGCCATGGCTCAAAAGGGTTTGGGCCAGGACATTTTGAAACATGGAATTGTGGATGTGGAGTATAAAAGGGTACCATGTGAATACAAGAACCAAAACTTAGCCTTACGTGTGGAAGAATCAAGCAAGAAGCCACATTACTTAGCAGTCAAAGTTCTATACCAAGGTGGTCAGACAGAGATAGTAGCCATTGATGTTGCTCAGGTTGGTTCTTCTAACTGGAGTTTCCTGACTCGAAATTACGGGGCAGTATGGGACACCAGTAGGGTTCCGACTGGAGCGCTGCAATTCCGGTTCGTGGTGACTGGCGGGTTCGATGGAAAGATGGTTTGGGCAAAGAATGTGCTTCCTGCTGACTGGAAGCCAGGGATGGCATATGACACAAAGGTTCAAATCAGTGATATTGCACAGGAGGGTTGCTCTCCGTGTGATGATGGGATTTGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0005911 GO:0009505 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

260

Amino Acids

28.11

Weight (kDa)

8.71

Isoelectric Point (pI)

35.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	58 - 133	1.1e-10	Lytic transglycolase
Expansin_C	PF01357	147 - 228	6.9e-20	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45970 AT3G45970 AT4G38400
fragaria_vesca	FvH4_2g16110
malus_domestica	MD05G1130300.v1.1 MD10G1133200.v1.1
prunus_persica	Prupe.8G174500_v2.0.a1
pyrus_communis	pycom05g12690 pycom10g11500
rosa_chinensis	RchiOBHm_Chr6g0279781
rosa_laevigata	RLG00000013120
rosa_multiflora	Rmu_sc0001719.1_g000021
rosa_roxburghii	Rroxscaffold_7G00188660
rosa_rugosa	Rorug06G0128000
rosa_samantha	Rh6AG236200 Rh6BG240400 Rh6DG234100
rosa_wichuraiana	Rw6G020590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	192
Acc65I	GGTACC	1 cut(s)	406
AccB1I	GGYRCC	1 cut(s)	406
AciI	CCGC	2 cut(s)	102, 642
AcoI	YGGCCR	1 cut(s)	336
AfaI	GTAC	2 cut(s)	253, 408
AfeI	AGCGCT	1 cut(s)	615
AfiI	CCNNNNNNNGG	1 cut(s)	631
AflIII	ACRYGT	1 cut(s)	442
AgsI	TTSAA	3 cut(s)	186, 373, 725
AjnI	CCWGG	2 cut(s)	360, 697
AjuI	GAANNNNNNNTTGG	2 cut(s)	646, 678
AluBI	AGCT	4 cut(s)	86, 143, 203, 329
AluI	AGCT	4 cut(s)	86, 143, 203, 329
Alw26I	GTCTC	1 cut(s)	43
Aor51HI	AGCGCT	1 cut(s)	615
AoxI	GGCC	2 cut(s)	336, 358
ApeKI	GCWGC	6 cut(s)	83, 104, 170, 173, 321, 616
Asp718I	GGTACC	1 cut(s)	406
AspLEI	GCGC	1 cut(s)	616
AspS9I	GGNCC	1 cut(s)	358
AsuHPI	GGTGA	1 cut(s)	646
BalI	TGGCCA	1 cut(s)	338
BanI	GGYRCC	1 cut(s)	406
BarI	GAAGNNNNNNTAC	2 cut(s)	455, 487
BbvI	GCAGC	6 cut(s)	91, 95, 157, 160, 333, 603
BccI	CCATC	5 cut(s)	191, 644, 652, 697, 761
BciT130I	CCWGG	2 cut(s)	362, 699
BclI	TGATCA	1 cut(s)	273
BcoDI	GTCTC	1 cut(s)	43
BfaI	CTAG	1 cut(s)	267
BfoI	RGCGCY	1 cut(s)	617
BisI	GCNGC	7 cut(s)	84, 102, 105, 171, 174, 322, 617
BlsI	GCNGC	7 cut(s)	85, 103, 106, 172, 175, 323, 618
Bme1390I	CCNGG	2 cut(s)	362, 699
BmgT120I	GGNCC	1 cut(s)	358
BmiI	GGNNCC	2 cut(s)	408, 603
BmrFI	CCNGG	2 cut(s)	362, 699
BmsI	GCATC	1 cut(s)	79
BplI	GAGNNNNNCTC	2 cut(s)	737, 769
BpmI	CTGGAG	2 cut(s)	574, 630
Bpu10I	CCTNAGC	1 cut(s)	534
BsaAI	YACGTR	1 cut(s)	443
BsaBI	GATNNNNATC	1 cut(s)	288
BsaJI	CCNNGG	4 cut(s)	78, 339, 496, 698
BsaWI	WCCGGW	1 cut(s)	624
Bsc4I	CCNNNNNNNGG	1 cut(s)	631
Bse1I	ACTGG	5 cut(s)	557, 594, 613, 643, 695
Bse8I	GATNNNNATC	1 cut(s)	288
BseBI	CCWGG	2 cut(s)	362, 699
BseDI	CCNNGG	4 cut(s)	78, 339, 496, 698
BseGI	GGATG	2 cut(s)	394, 708
BseJI	GATNNNNATC	1 cut(s)	288
BseLI	CCNNNNNNNGG	1 cut(s)	631
BseMII	CTCAG	1 cut(s)	548
BseNI	ACTGG	5 cut(s)	557, 594, 613, 643, 695
BseRI	GAGGAG	1 cut(s)	31
BseXI	GCAGC	6 cut(s)	91, 95, 157, 160, 333, 603
BsgI	GTGCAG	1 cut(s)	90
BshFI	GGCC	2 cut(s)	338, 360
BshNI	GGYRCC	1 cut(s)	406
BsiSI	CCGG	1 cut(s)	625
BslFI	GGGAC	3 cut(s)	162, 277, 602
BslI	CCNNNNNNNGG	1 cut(s)	631
BsmAI	GTCTC	1 cut(s)	43
BsmBI	CGTCTC	1 cut(s)	43
BsmFI	GGGAC	3 cut(s)	162, 277, 602
BsmI	GAATGC	1 cut(s)	244
BsnI	GGCC	2 cut(s)	338, 360
Bsp1407I	TGTACA	1 cut(s)	251
Bsp143I	GATC	3 cut(s)	58, 273, 283
Bsp19I	CCATGG	1 cut(s)	339
BspACI	CCGC	2 cut(s)	102, 642
BspANI	GGCC	2 cut(s)	338, 360
BspCNI	CTCAG	1 cut(s)	547
BspLI	GGNNCC	2 cut(s)	408, 603
BspT107I	GGYRCC	1 cut(s)	406
BsrGI	TGTACA	1 cut(s)	251
BsrI	ACTGG	5 cut(s)	557, 594, 613, 643, 695
BssECI	CCNNGG	4 cut(s)	78, 339, 496, 698
BssMI	GATC	3 cut(s)	58, 273, 283
BssT1I	CCWWGG	3 cut(s)	78, 339, 496
Bst2UI	CCWGG	2 cut(s)	362, 699
Bst6I	CTCTTC	1 cut(s)	32
BstAUI	TGTACA	1 cut(s)	251
BstBAI	YACGTR	1 cut(s)	443
BstDEI	CTNAG	5 cut(s)	152, 317, 433, 475, 534
BstDSI	CCRYGG	1 cut(s)	339
BstF5I	GGATG	2 cut(s)	394, 708
BstH2I	RGCGCY	1 cut(s)	617
BstHHI	GCGC	1 cut(s)	616
BstKTI	GATC	3 cut(s)	61, 276, 286
BstMAI	GTCTC	1 cut(s)	43
BstMBI	GATC	3 cut(s)	58, 273, 283
BstMWI	GCNNNNNNNGC	1 cut(s)	335
BstNI	CCWGG	2 cut(s)	362, 699
BstSCI	CCNGG	2 cut(s)	360, 697
BstV1I	GCAGC	6 cut(s)	91, 95, 157, 160, 333, 603
BsuRI	GGCC	2 cut(s)	338, 360
BtgI	CCRYGG	1 cut(s)	339
BtsCI	GGATG	2 cut(s)	394, 708
BtsIMutI	CAGTG	1 cut(s)	736
CfoI	GCGC	1 cut(s)	616
Cfr13I	GGNCC	1 cut(s)	358
Csp6I	GTAC	2 cut(s)	252, 407
CviAII	CATG	5 cut(s)	216, 334, 340, 377, 411
CviQI	GTAC	2 cut(s)	252, 407
DdeI	CTNAG	5 cut(s)	152, 317, 433, 475, 534
DpnI	GATC	3 cut(s)	60, 275, 285
DpnII	GATC	3 cut(s)	58, 273, 283
EaeI	YGGCCR	1 cut(s)	336
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Eco130I	CCWWGG	3 cut(s)	78, 339, 496
Eco47III	AGCGCT	1 cut(s)	615
EcoRII	CCWGG	2 cut(s)	360, 697
EcoT14I	CCWWGG	3 cut(s)	78, 339, 496
ErhI	CCWWGG	3 cut(s)	78, 339, 496
Esp3I	CGTCTC	1 cut(s)	43
FaeI	CATG	5 cut(s)	219, 337, 343, 380, 414
FaqI	GGGAC	3 cut(s)	162, 277, 602
FatI	CATG	5 cut(s)	215, 333, 339, 376, 410
FauI	CCCGC	1 cut(s)	635
FauNDI	CATATG	1 cut(s)	709
FbaI	TGATCA	1 cut(s)	273
Fnu4HI	GCNGC	7 cut(s)	84, 102, 105, 171, 174, 322, 617
FokI	GGATG	2 cut(s)	401, 715
Fsp4HI	GCNGC	7 cut(s)	84, 102, 105, 171, 174, 322, 617
FspBI	CTAG	1 cut(s)	267
GlaI	GCGC	1 cut(s)	615
GluI	GCNGC	7 cut(s)	84, 102, 105, 171, 174, 322, 617
GsuI	CTGGAG	2 cut(s)	574, 630
HaeII	RGCGCY	1 cut(s)	617
HaeIII	GGCC	2 cut(s)	338, 360
HapII	CCGG	1 cut(s)	625
HhaI	GCGC	1 cut(s)	616
Hin1II	CATG	5 cut(s)	219, 337, 343, 380, 414
Hin6I	GCGC	1 cut(s)	614
HinP1I	GCGC	1 cut(s)	614
HinfI	GANTC	2 cut(s)	452, 565
HpaII	CCGG	1 cut(s)	625
HphI	GGTGA	1 cut(s)	646
Hpy166II	GTNNAC	1 cut(s)	161
Hpy188I	TCNGA	3 cut(s)	225, 507, 606
Hpy188III	TCNNGA	1 cut(s)	562
Hpy8I	GTNNAC	1 cut(s)	161
HpyAV	CCTTC	1 cut(s)	192
HpyCH4IV	ACGT	1 cut(s)	442
HpyCH4V	TGCA	6 cut(s)	18, 70, 107, 242, 619, 740
HpyF10VI	GCNNNNNNNGC	1 cut(s)	335
HpyF3I	CTNAG	5 cut(s)	152, 317, 433, 475, 534
HpySE526I	ACGT	1 cut(s)	442
Hsp92II	CATG	5 cut(s)	219, 337, 343, 380, 414
HspAI	GCGC	1 cut(s)	614
KpnI	GGTACC	1 cut(s)	410
Ksp22I	TGATCA	1 cut(s)	273
Kzo9I	GATC	3 cut(s)	58, 273, 283
LmnI	GCTCC	2 cut(s)	200, 611
Lsp1109I	GCAGC	6 cut(s)	91, 95, 157, 160, 333, 603
LweI	GCATC	1 cut(s)	79
MaeI	CTAG	1 cut(s)	267
MaeII	ACGT	1 cut(s)	442
MaeIII	GTNAC	1 cut(s)	634
MalI	GATC	3 cut(s)	60, 275, 285
MboI	GATC	3 cut(s)	58, 273, 283
MboII	GAAGA	4 cut(s)	19, 105, 461, 537
MlsI	TGGCCA	1 cut(s)	338
MluCI	AATT	4 cut(s)	186, 381, 571, 620
MluNI	TGGCCA	1 cut(s)	338
MlyI	GAGTC	1 cut(s)	559
MmeI	TCCRAC	1 cut(s)	629
MnlI	CCTC	3 cut(s)	35, 52, 739
Mox20I	TGGCCA	1 cut(s)	338
MscI	TGGCCA	1 cut(s)	338
MslI	CAYNNNNRTG	1 cut(s)	338
Msp20I	TGGCCA	1 cut(s)	338
MspA1I	CMGCKG	1 cut(s)	104
MspI	CCGG	1 cut(s)	625
MspR9I	CCNGG	2 cut(s)	362, 699
Mva1269I	GAATGC	1 cut(s)	244
MvaI	CCWGG	2 cut(s)	362, 699
MwoI	GCNNNNNNNGC	1 cut(s)	335
NcoI	CCATGG	1 cut(s)	339
NdeI	CATATG	1 cut(s)	709
NdeII	GATC	3 cut(s)	58, 273, 283
NlaIII	CATG	5 cut(s)	219, 337, 343, 380, 414
NlaIV	GGNNCC	2 cut(s)	408, 603
NmuCI	GTSAC	1 cut(s)	634
PctI	GAATGC	1 cut(s)	244
PfeI	GAWTC	1 cut(s)	452
PkrI	GCNGC	7 cut(s)	85, 103, 106, 172, 175, 323, 618
PleI	GAGTC	1 cut(s)	559
PpsI	GAGTC	1 cut(s)	559
Ppu21I	YACGTR	1 cut(s)	443
PsiI	TTATAA	1 cut(s)	192
Psp6I	CCWGG	2 cut(s)	360, 697
PspGI	CCWGG	2 cut(s)	360, 697
PspN4I	GGNNCC	2 cut(s)	408, 603
PspPI	GGNCC	1 cut(s)	358
RsaI	GTAC	2 cut(s)	253, 408
RsaNI	GTAC	2 cut(s)	252, 407
RseI	CAYNNNNRTG	1 cut(s)	338
SatI	GCNGC	7 cut(s)	84, 102, 105, 171, 174, 322, 617
Sau3AI	GATC	3 cut(s)	58, 273, 283
Sau96I	GGNCC	1 cut(s)	358
SchI	GAGTC	1 cut(s)	559
ScrFI	CCNGG	2 cut(s)	362, 699
SetI	ASST	9 cut(s)	88, 145, 168, 205, 331, 445, 502, 540, 723
SfaNI	GCATC	1 cut(s)	79
SmiMI	CAYNNNNRTG	1 cut(s)	338
Sse9I	AATT	4 cut(s)	186, 381, 571, 620
SsiI	CCGC	2 cut(s)	102, 642
SspMI	CTAG	1 cut(s)	267
StyD4I	CCNGG	2 cut(s)	360, 697
StyI	CCWWGG	3 cut(s)	78, 339, 496
TaiI	ACGT	1 cut(s)	445
TaqI	TCGA	2 cut(s)	568, 648
TasI	AATT	4 cut(s)	186, 381, 571, 620
TatI	WGTACW	1 cut(s)	251
TauI	GCSGC	1 cut(s)	104
TfiI	GAWTC	1 cut(s)	452
TscAI	CASTG	1 cut(s)	736
TseFI	GTSAC	1 cut(s)	634
TseI	GCWGC	6 cut(s)	83, 104, 170, 173, 321, 616
Tsp45I	GTSAC	1 cut(s)	634
TspDTI	ATGAA	2 cut(s)	204, 322
TspGWI	ACGGA	1 cut(s)	747
TspRI	CASTG	1 cut(s)	736
XspI	CTAG	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.