Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0013081

Physical Location & Seq

Genomic Coordinates Forward (+)

21477166 .. 21479138

Gene Structure 1973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1133200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGTCTTTGTTTATTTGCTTCCTCTTCTTTTTCCTAATCTCCTCTGCAACTGCTTGTGATCGCTGTGTGAAGCAATCCAAGGCATCCTTTTTCTCTACATCCTCTGCACTTTCATCTGGGGCTTGTGGGTATGGCTCCTTGGCCTCGGGATTTAGTGGTGGACACCTTGCAGCTGGTGTGCCTTCCCTTTTCAAAGGTGGAGCTGGTTGTGGTGCATGCTTTCAGATGAGATGCAAGAACACAACTCTTTGCACAAAACAAGGGACTATAGTAACTTTGACTGATCTCAATCAAAGTAACCAAACAGATTTTGTTCTGAGTAGCAGAGCTTTTGCGGCCATGGCTCAAAAGGGTTTGGACCAACACATTTTGAGACGTGGCATTCTGGATGTGGAGTATAAGAGGGTGCCATGTGAATACAAGAACCAAAATTTATCTTTACGTGTGGAAGAATCAAGCCAGAAGCCACATTACTTAGCAGTAAAAATTTTGTACCAAGGTGGTCAGACAGAAATTGTAGCCATGGATGTTGCTCAGGTTGGATCTTCAAATTGGAGTTTCCTAAGTCGAAACAACGGGGCAATTTGGAAAACGAGTAGGGTTCCGGCGGGGGCGCTACAGTTCCGGTTCGTGGTGACGTCTGGGTACGATGGGAAGACGGTTTGGGCACCGAATGTTCTTCCGGTTAATTGGAAGTCTGGGATGATATATGACACAAGGGTTCAGATCACTGACATTGCGCAAGAGGGGTGCCCTCACTGTGATGATGGGAGCTGGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0005911 GO:0009505 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

261

Amino Acids

28.21

Weight (kDa)

8.86

Isoelectric Point (pI)

45.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	57 - 133	1e-13	Lytic transglycolase
Expansin_C	PF01357	147 - 228	1.4e-19	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45970 AT3G45970 AT4G38400
fragaria_vesca	FvH4_2g16110
malus_domestica	MD05G1130300.v1.1 MD10G1133200.v1.1
prunus_persica	Prupe.8G174500_v2.0.a1
pyrus_communis	pycom05g12690 pycom10g11500
rosa_chinensis	RchiOBHm_Chr6g0279781
rosa_laevigata	RLG00000013120
rosa_multiflora	Rmu_sc0001719.1_g000021
rosa_roxburghii	Rroxscaffold_7G00188660
rosa_rugosa	Rorug06G0128000
rosa_samantha	Rh6AG236200 Rh6BG240400 Rh6DG234100
rosa_wichuraiana	Rw6G020590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	641
Acc16I	TGCGCA	1 cut(s)	741
AccB1I	GGYRCC	3 cut(s)	406, 667, 750
AciI	CCGC	2 cut(s)	335, 608
AclWI	GGATC	1 cut(s)	550
AcoI	YGGCCR	1 cut(s)	336
AcsI	RAATTY	2 cut(s)	430, 486
AcyI	GRCGYC	1 cut(s)	638
AfaI	GTAC	2 cut(s)	494, 647
AfiI	CCNNNNNNNGG	1 cut(s)	631
AflIII	ACRYGT	1 cut(s)	442
AgsI	TTSAA	2 cut(s)	193, 549
AjiI	CACGTC	1 cut(s)	377
AluBI	AGCT	4 cut(s)	173, 203, 329, 774
AluI	AGCT	4 cut(s)	173, 203, 329, 774
Alw26I	GTCTC	1 cut(s)	367
AlwI	GGATC	1 cut(s)	550
Ama87I	CYCGRG	1 cut(s)	145
AoxI	GGCC	2 cut(s)	141, 336
ApeKI	GCWGC	1 cut(s)	170
ApoI	RAATTY	2 cut(s)	430, 486
AspLEI	GCGC	2 cut(s)	616, 742
AspS9I	GGNCC	1 cut(s)	358
AsuHPI	GGTGA	1 cut(s)	646
AvaI	CYCGRG	1 cut(s)	145
AvaII	GGWCC	1 cut(s)	358
BaeGI	GKGCMC	2 cut(s)	670, 755
BanI	GGYRCC	3 cut(s)	406, 667, 750
BarI	GAAGNNNNNNTAC	2 cut(s)	455, 487
BbsI	GAAGAC	1 cut(s)	662
BbvI	GCAGC	1 cut(s)	182
BccI	CCATC	2 cut(s)	644, 761
BcoDI	GTCTC	1 cut(s)	367
BfmI	CTRYAG	2 cut(s)	267, 617
BfoI	RGCGCY	1 cut(s)	617
BisI	GCNGC	2 cut(s)	171, 336
BlsI	GCNGC	2 cut(s)	172, 337
Bme18I	GGWCC	1 cut(s)	358
BmeT110I	CYCGRG	1 cut(s)	145
BmgBI	CACGTC	1 cut(s)	377
BmgT120I	GGNCC	1 cut(s)	358
BmiI	GGNNCC	5 cut(s)	136, 408, 603, 669, 752
BmsI	GCATC	2 cut(s)	92, 221
BpiI	GAAGAC	1 cut(s)	662
Bpu10I	CCTNAGC	1 cut(s)	534
BsaAI	YACGTR	1 cut(s)	443
BsaBI	GATNNNNATC	1 cut(s)	288
BsaHI	GRCGYC	1 cut(s)	638
BsaJI	CCNNGG	6 cut(s)	78, 138, 144, 339, 496, 522
BsaWI	WCCGGW	2 cut(s)	624, 682
Bsc4I	CCNNNNNNNGG	1 cut(s)	631
Bse3DI	GCAATG	1 cut(s)	735
Bse8I	GATNNNNATC	1 cut(s)	288
BseDI	CCNNGG	6 cut(s)	78, 138, 144, 339, 496, 522
BseGI	GGATG	5 cut(s)	83, 98, 394, 532, 708
BseJI	GATNNNNATC	1 cut(s)	288
BseLI	CCNNNNNNNGG	1 cut(s)	631
BseMI	GCAATG	1 cut(s)	735
BseMII	CTCAG	2 cut(s)	308, 548
BseRI	GAGGAG	1 cut(s)	31
BseSI	GKGCMC	2 cut(s)	670, 755
BseXI	GCAGC	1 cut(s)	182
BsgI	GTGCAG	1 cut(s)	90
BshFI	GGCC	2 cut(s)	143, 338
BshNI	GGYRCC	3 cut(s)	406, 667, 750
BsiHKCI	CYCGRG	1 cut(s)	145
BsiSI	CCGG	3 cut(s)	605, 625, 683
BslFI	GGGAC	1 cut(s)	277
BslI	CCNNNNNNNGG	1 cut(s)	631
BsmAI	GTCTC	1 cut(s)	367
BsmBI	CGTCTC	1 cut(s)	367
BsmFI	GGGAC	1 cut(s)	277
BsmI	GAATGC	1 cut(s)	381
BsnI	GGCC	2 cut(s)	143, 338
BsoBI	CYCGRG	1 cut(s)	145
Bsp1286I	GDGCHC	2 cut(s)	670, 755
Bsp143I	GATC	4 cut(s)	58, 283, 542, 726
Bsp19I	CCATGG	2 cut(s)	339, 522
BspACI	CCGC	2 cut(s)	335, 608
BspANI	GGCC	2 cut(s)	143, 338
BspCNI	CTCAG	2 cut(s)	309, 547
BspLI	GGNNCC	5 cut(s)	136, 408, 603, 669, 752
BspPI	GGATC	1 cut(s)	550
BspT107I	GGYRCC	3 cut(s)	406, 667, 750
BsrDI	GCAATG	1 cut(s)	735
BssECI	CCNNGG	6 cut(s)	78, 138, 144, 339, 496, 522
BssMI	GATC	4 cut(s)	58, 283, 542, 726
BssNI	GRCGYC	1 cut(s)	638
BssT1I	CCWWGG	5 cut(s)	78, 138, 339, 496, 522
Bst4CI	ACNGT	3 cut(s)	621, 661, 761
Bst6I	CTCTTC	1 cut(s)	29
BstACI	GRCGYC	1 cut(s)	638
BstBAI	YACGTR	1 cut(s)	443
BstC8I	GCNNGC	1 cut(s)	217
BstDEI	CTNAG	4 cut(s)	317, 475, 534, 563
BstDSI	CCRYGG	2 cut(s)	339, 522
BstF5I	GGATG	5 cut(s)	83, 98, 394, 532, 708
BstH2I	RGCGCY	1 cut(s)	617
BstHHI	GCGC	2 cut(s)	616, 742
BstKTI	GATC	4 cut(s)	61, 286, 545, 729
BstMAI	GTCTC	1 cut(s)	367
BstMBI	GATC	4 cut(s)	58, 283, 542, 726
BstMWI	GCNNNNNNNGC	2 cut(s)	335, 341
BstNSI	RCATGY	1 cut(s)	219
BstSFI	CTRYAG	2 cut(s)	267, 617
BstSLI	GKGCMC	2 cut(s)	670, 755
BstV1I	GCAGC	1 cut(s)	182
BstV2I	GAAGAC	1 cut(s)	662
BstX2I	RGATCY	1 cut(s)	542
BstYI	RGATCY	1 cut(s)	542
BsuRI	GGCC	2 cut(s)	143, 338
BtgI	CCRYGG	2 cut(s)	339, 522
BtrI	CACGTC	1 cut(s)	377
BtsCI	GGATG	5 cut(s)	83, 98, 394, 532, 708
BtsIMutI	CAGTG	2 cut(s)	729, 757
Cac8I	GCNNGC	1 cut(s)	217
CfoI	GCGC	2 cut(s)	616, 742
Cfr13I	GGNCC	1 cut(s)	358
Csp6I	GTAC	2 cut(s)	493, 646
CviAII	CATG	4 cut(s)	216, 340, 411, 523
CviQI	GTAC	2 cut(s)	493, 646
DdeI	CTNAG	4 cut(s)	317, 475, 534, 563
DpnI	GATC	4 cut(s)	60, 285, 544, 728
DpnII	GATC	4 cut(s)	58, 283, 542, 726
EaeI	YGGCCR	1 cut(s)	336
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
Eco130I	CCWWGG	5 cut(s)	78, 138, 339, 496, 522
Eco47I	GGWCC	1 cut(s)	358
Eco88I	CYCGRG	1 cut(s)	145
EcoT14I	CCWWGG	5 cut(s)	78, 138, 339, 496, 522
ErhI	CCWWGG	5 cut(s)	78, 138, 339, 496, 522
Esp3I	CGTCTC	1 cut(s)	367
FaeI	CATG	4 cut(s)	219, 343, 414, 526
FalI	AAGNNNNNCTT	2 cut(s)	71, 103
FaqI	GGGAC	1 cut(s)	277
FatI	CATG	4 cut(s)	215, 339, 410, 522
FauI	CCCGC	1 cut(s)	601
Fnu4HI	GCNGC	2 cut(s)	171, 336
FokI	GGATG	5 cut(s)	70, 85, 401, 539, 715
Fsp4HI	GCNGC	2 cut(s)	171, 336
FspI	TGCGCA	1 cut(s)	741
GlaI	GCGC	2 cut(s)	615, 741
GluI	GCNGC	2 cut(s)	171, 336
HaeII	RGCGCY	1 cut(s)	617
HaeIII	GGCC	2 cut(s)	143, 338
HapII	CCGG	3 cut(s)	605, 625, 683
HhaI	GCGC	2 cut(s)	616, 742
Hin1I	GRCGYC	1 cut(s)	638
Hin1II	CATG	4 cut(s)	219, 343, 414, 526
Hin6I	GCGC	2 cut(s)	614, 740
HinP1I	GCGC	2 cut(s)	614, 740
HinfI	GANTC	1 cut(s)	452
HpaII	CCGG	3 cut(s)	605, 625, 683
HphI	GGTGA	1 cut(s)	646
Hpy166II	GTNNAC	1 cut(s)	161
Hpy188I	TCNGA	4 cut(s)	225, 318, 507, 726
Hpy188III	TCNNGA	2 cut(s)	147, 386
Hpy8I	GTNNAC	1 cut(s)	161
HpyAV	CCTTC	1 cut(s)	192
HpyCH4III	ACNGT	3 cut(s)	621, 661, 761
HpyCH4IV	ACGT	3 cut(s)	376, 442, 638
HpyCH4V	TGCA	6 cut(s)	47, 107, 170, 215, 234, 252
HpyF10VI	GCNNNNNNNGC	2 cut(s)	335, 341
HpyF3I	CTNAG	4 cut(s)	317, 475, 534, 563
HpySE526I	ACGT	3 cut(s)	376, 442, 638
Hsp92I	GRCGYC	1 cut(s)	638
Hsp92II	CATG	4 cut(s)	219, 343, 414, 526
HspAI	GCGC	2 cut(s)	614, 740
Kzo9I	GATC	4 cut(s)	58, 283, 542, 726
LmnI	GCTCC	3 cut(s)	140, 200, 771
Lsp1109I	GCAGC	1 cut(s)	182
LweI	GCATC	2 cut(s)	92, 221
MaeII	ACGT	3 cut(s)	376, 442, 638
MaeIII	GTNAC	3 cut(s)	271, 296, 634
MalI	GATC	4 cut(s)	60, 285, 544, 728
MboI	GATC	4 cut(s)	58, 283, 542, 726
MboII	GAAGA	5 cut(s)	16, 461, 537, 667, 671
MflI	RGATCY	1 cut(s)	542
MhlI	GDGCHC	2 cut(s)	670, 755
MluCI	AATT	6 cut(s)	430, 486, 513, 550, 582, 688
MmeI	TCCRAC	1 cut(s)	520
MnlI	CCTC	7 cut(s)	32, 52, 112, 154, 396, 739, 765
MseI	TTAA	1 cut(s)	687
MslI	CAYNNNNRTG	1 cut(s)	762
MspA1I	CMGCKG	1 cut(s)	173
MspI	CCGG	3 cut(s)	605, 625, 683
Mva1269I	GAATGC	1 cut(s)	381
MwoI	GCNNNNNNNGC	2 cut(s)	335, 341
NcoI	CCATGG	2 cut(s)	339, 522
NdeII	GATC	4 cut(s)	58, 283, 542, 726
NlaIII	CATG	4 cut(s)	219, 343, 414, 526
NlaIV	GGNNCC	5 cut(s)	136, 408, 603, 669, 752
NmuCI	GTSAC	1 cut(s)	634
NsbI	TGCGCA	1 cut(s)	741
NspI	RCATGY	1 cut(s)	219
PaeI	GCATGC	1 cut(s)	219
PctI	GAATGC	1 cut(s)	381
PfeI	GAWTC	1 cut(s)	452
PkrI	GCNGC	2 cut(s)	172, 337
Ppu21I	YACGTR	1 cut(s)	443
PspN4I	GGNNCC	5 cut(s)	136, 408, 603, 669, 752
PspPI	GGNCC	1 cut(s)	358
PsuI	RGATCY	1 cut(s)	542
PvuII	CAGCTG	1 cut(s)	173
RsaI	GTAC	2 cut(s)	494, 647
RsaNI	GTAC	2 cut(s)	493, 646
RseI	CAYNNNNRTG	1 cut(s)	762
SaqAI	TTAA	1 cut(s)	687
SatI	GCNGC	2 cut(s)	171, 336
Sau3AI	GATC	4 cut(s)	58, 283, 542, 726
Sau96I	GGNCC	1 cut(s)	358
SduI	GDGCHC	2 cut(s)	670, 755
SfaNI	GCATC	2 cut(s)	92, 221
SfcI	CTRYAG	2 cut(s)	267, 617
SinI	GGWCC	1 cut(s)	358
SmiMI	CAYNNNNRTG	1 cut(s)	762
SphI	GCATGC	1 cut(s)	219
Sse9I	AATT	6 cut(s)	430, 486, 513, 550, 582, 688
SsiI	CCGC	2 cut(s)	335, 608
StyI	CCWWGG	5 cut(s)	78, 138, 339, 496, 522
TaaI	ACNGT	3 cut(s)	621, 661, 761
TaiI	ACGT	3 cut(s)	379, 445, 641
TaqI	TCGA	1 cut(s)	568
TasI	AATT	6 cut(s)	430, 486, 513, 550, 582, 688
TauI	GCSGC	1 cut(s)	338
TfiI	GAWTC	1 cut(s)	452
Tru1I	TTAA	1 cut(s)	687
Tru9I	TTAA	1 cut(s)	687
TscAI	CASTG	2 cut(s)	736, 764
TseFI	GTSAC	1 cut(s)	634
TseI	GCWGC	1 cut(s)	170
Tsp45I	GTSAC	1 cut(s)	634
TspDTI	ATGAA	1 cut(s)	102
TspRI	CASTG	2 cut(s)	736, 764
VpaK11BI	GGWCC	1 cut(s)	358
XapI	RAATTY	2 cut(s)	430, 486
XceI	RCATGY	1 cut(s)	219
ZraI	GACGTC	1 cut(s)	639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.