Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0013081

Physical Location & Seq

Genomic Coordinates Forward (+)

17730971 .. 17732931

Gene Structure 1961 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G174500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCTTTGTTTCTTTGCTTCCTCTTCTTCTTTCTCATCTCCTCTGCCTCTGCTTGTGACCGCTGTAGGCACCAATCCAAGGCAGCCTATTTCTCCACAGCCTCTGCACTTTCATCTGGGGCTTGTGGGTATGGTTCCTTGGCCTTGGGACTTGGTGGAGGACACCTTGCAGCTGGTGTGCCTTCCCTCTACAAAGATGGAGCTGGCTGTGGTGCATGCTTCCAGATAAGATGCAAGAACACAACTCTTTGCACAAAACAAGGGACCAGAGTTACTTTGACTGATCTCAATAAAAGTAATCAGACAGATTTTGTTCTCAGCAGCAGAGCTTTCATGGCCATGGCTCAAAAGGGTTTGGGCCAAGACATTTTGAGACACGGCATTGTCGATGTGGAATATAAGAGGGTACCATGTGAATACAAAAACCAAAATCTAGCCTTGCGTGTGGAAGAATCGAGCCAAAAGCCACATTACTTAGCAATCAAAATTCTGTATCAAGGTGGTCAGACAGAAATAGTAGCCATTGATGTTGCTCAGGTTGGTTCTTCAAATTGGGGTTTCCTGACTCGAAACAATGGGGCAATCTGGGACACGAGTAGGGTTCCGGCAGGGGGCCTACAGTTCCGGTTCTTGGTGACGGCCGGGTACGATGGGAAGACGGTTTGGGCACAGAATGTGCTCCCTGCTAACTGGAAACCTGGGATGATATATGACACAAAAGTTCAAATAAGTGACATTGCAAAAGAGGGTTGCTCTACTACTTGTGATGATGGGAGCTGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0005911 GO:0009505 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

262

Amino Acids

28.22

Weight (kDa)

8.84

Isoelectric Point (pI)

37.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45970 AT3G45970 AT4G38400
fragaria_vesca	FvH4_2g16110
malus_domestica	MD05G1130300.v1.1 MD10G1133200.v1.1
prunus_persica	Prupe.8G174500_v2.0.a1
pyrus_communis	pycom05g12690 pycom10g11500
rosa_chinensis	RchiOBHm_Chr6g0279781
rosa_laevigata	RLG00000013120
rosa_multiflora	Rmu_sc0001719.1_g000021
rosa_roxburghii	Rroxscaffold_7G00188660
rosa_rugosa	Rorug06G0128000
rosa_samantha	Rh6AG236200 Rh6BG240400 Rh6DG234100
rosa_wichuraiana	Rw6G020590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	406
AccB1I	GGYRCC	2 cut(s)	69, 406
AciI	CCGC	1 cut(s)	61
AcoI	YGGCCR	2 cut(s)	336, 639
AcsI	RAATTY	1 cut(s)	486
AfaI	GTAC	2 cut(s)	408, 647
AfiI	CCNNNNNNNGG	3 cut(s)	79, 611, 631
AgsI	TTSAA	2 cut(s)	549, 725
AjnI	CCWGG	1 cut(s)	697
AluBI	AGCT	4 cut(s)	173, 203, 329, 777
AluI	AGCT	4 cut(s)	173, 203, 329, 777
Alw21I	GWGCWC	1 cut(s)	681
Alw26I	GTCTC	1 cut(s)	367
AlwNI	CAGNNNCTG	1 cut(s)	104
AoxI	GGCC	5 cut(s)	141, 336, 358, 613, 639
ApeKI	GCWGC	3 cut(s)	83, 170, 321
ApoI	RAATTY	1 cut(s)	486
Asp718I	GGTACC	1 cut(s)	406
AspS9I	GGNCC	3 cut(s)	264, 358, 613
AsuC2I	CCSGG	1 cut(s)	643
AsuHPI	GGTGA	1 cut(s)	646
AvaII	GGWCC	1 cut(s)	264
BaeGI	GKGCMC	1 cut(s)	670
BalI	TGGCCA	1 cut(s)	338
BanI	GGYRCC	2 cut(s)	69, 406
BauI	CACGAG	1 cut(s)	592
BbsI	GAAGAC	1 cut(s)	662
Bbv12I	GWGCWC	1 cut(s)	681
BbvI	GCAGC	3 cut(s)	95, 182, 333
BccI	CCATC	3 cut(s)	191, 644, 764
BceAI	ACGGC	2 cut(s)	394, 654
BciT130I	CCWGG	1 cut(s)	699
BcnI	CCSGG	1 cut(s)	643
BcoDI	GTCTC	1 cut(s)	367
BfaI	CTAG	1 cut(s)	434
BfmI	CTRYAG	2 cut(s)	64, 617
BisI	GCNGC	3 cut(s)	84, 171, 322
BlsI	GCNGC	3 cut(s)	85, 172, 323
Bme1390I	CCNGG	2 cut(s)	643, 699
Bme18I	GGWCC	1 cut(s)	264
BmgT120I	GGNCC	3 cut(s)	264, 358, 613
BmiI	GGNNCC	6 cut(s)	71, 136, 265, 408, 603, 614
BmrFI	CCNGG	2 cut(s)	643, 699
BmsI	GCATC	1 cut(s)	221
BpiI	GAAGAC	1 cut(s)	662
BplI	GAGNNNNNCTC	2 cut(s)	737, 769
Bpu10I	CCTNAGC	1 cut(s)	534
BpuMI	CCSGG	1 cut(s)	643
BsaJI	CCNNGG	5 cut(s)	78, 138, 144, 339, 698
BsaWI	WCCGGW	1 cut(s)	624
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 611, 631
Bse1I	ACTGG	1 cut(s)	695
Bse3DI	GCAATG	1 cut(s)	735
BseBI	CCWGG	1 cut(s)	699
BseDI	CCNNGG	5 cut(s)	78, 138, 144, 339, 698
BseGI	GGATG	1 cut(s)	708
BseLI	CCNNNNNNNGG	3 cut(s)	79, 611, 631
BseMI	GCAATG	1 cut(s)	735
BseMII	CTCAG	2 cut(s)	331, 548
BseNI	ACTGG	1 cut(s)	695
BseRI	GAGGAG	1 cut(s)	31
BseSI	GKGCMC	1 cut(s)	670
BseX3I	CGGCCG	1 cut(s)	639
BseXI	GCAGC	3 cut(s)	95, 182, 333
BsgI	GTGCAG	1 cut(s)	90
Bsh1285I	CGRYCG	1 cut(s)	642
BshFI	GGCC	5 cut(s)	143, 338, 360, 615, 641
BshNI	GGYRCC	2 cut(s)	69, 406
BsiEI	CGRYCG	1 cut(s)	642
BsiHKAI	GWGCWC	1 cut(s)	681
BsiSI	CCGG	3 cut(s)	605, 625, 642
BslFI	GGGAC	3 cut(s)	162, 277, 602
BslI	CCNNNNNNNGG	3 cut(s)	79, 611, 631
BsmAI	GTCTC	1 cut(s)	367
BsmFI	GGGAC	3 cut(s)	162, 277, 602
BsnI	GGCC	5 cut(s)	143, 338, 360, 615, 641
Bsp1286I	GDGCHC	2 cut(s)	670, 681
Bsp143I	GATC	1 cut(s)	283
Bsp19I	CCATGG	1 cut(s)	339
BspACI	CCGC	1 cut(s)	61
BspANI	GGCC	5 cut(s)	143, 338, 360, 615, 641
BspCNI	CTCAG	2 cut(s)	330, 547
BspLI	GGNNCC	6 cut(s)	71, 136, 265, 408, 603, 614
BspT107I	GGYRCC	2 cut(s)	69, 406
BsrDI	GCAATG	1 cut(s)	735
BsrI	ACTGG	1 cut(s)	695
BssECI	CCNNGG	5 cut(s)	78, 138, 144, 339, 698
BssMI	GATC	1 cut(s)	283
BssSI	CACGAG	1 cut(s)	592
BssT1I	CCWWGG	4 cut(s)	78, 138, 144, 339
Bst2BI	CACGAG	1 cut(s)	592
Bst2UI	CCWGG	1 cut(s)	699
Bst4CI	ACNGT	2 cut(s)	621, 661
Bst6I	CTCTTC	1 cut(s)	29
BstC8I	GCNNGC	2 cut(s)	205, 217
BstDEI	CTNAG	3 cut(s)	317, 475, 534
BstDSI	CCRYGG	1 cut(s)	339
BstF5I	GGATG	1 cut(s)	708
BstKTI	GATC	1 cut(s)	286
BstMAI	GTCTC	1 cut(s)	367
BstMBI	GATC	1 cut(s)	283
BstMCI	CGRYCG	1 cut(s)	642
BstMWI	GCNNNNNNNGC	1 cut(s)	335
BstNI	CCWGG	1 cut(s)	699
BstNSI	RCATGY	1 cut(s)	219
BstSCI	CCNGG	2 cut(s)	641, 697
BstSFI	CTRYAG	2 cut(s)	64, 617
BstSLI	GKGCMC	1 cut(s)	670
BstV1I	GCAGC	3 cut(s)	95, 182, 333
BstV2I	GAAGAC	1 cut(s)	662
BstZI	CGGCCG	1 cut(s)	639
BsuRI	GGCC	5 cut(s)	143, 338, 360, 615, 641
BtgI	CCRYGG	1 cut(s)	339
BtsCI	GGATG	1 cut(s)	708
Cac8I	GCNNGC	2 cut(s)	205, 217
CaiI	CAGNNNCTG	1 cut(s)	104
Cfr13I	GGNCC	3 cut(s)	264, 358, 613
Csp6I	GTAC	2 cut(s)	407, 646
CviAII	CATG	4 cut(s)	216, 334, 340, 411
CviQI	GTAC	2 cut(s)	407, 646
DdeI	CTNAG	3 cut(s)	317, 475, 534
DpnI	GATC	1 cut(s)	285
DpnII	GATC	1 cut(s)	283
EaeI	YGGCCR	2 cut(s)	336, 639
EagI	CGGCCG	1 cut(s)	639
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
EclXI	CGGCCG	1 cut(s)	639
Eco130I	CCWWGG	4 cut(s)	78, 138, 144, 339
Eco47I	GGWCC	1 cut(s)	264
Eco52I	CGGCCG	1 cut(s)	639
EcoO109I	RGGNCCY	1 cut(s)	613
EcoRII	CCWGG	1 cut(s)	697
EcoT14I	CCWWGG	4 cut(s)	78, 138, 144, 339
ErhI	CCWWGG	4 cut(s)	78, 138, 144, 339
FaeI	CATG	4 cut(s)	219, 337, 343, 414
FaiI	YATR	8 cut(s)	132, 217, 335, 341, 399, 412, 709, 711
FaqI	GGGAC	3 cut(s)	162, 277, 602
FatI	CATG	4 cut(s)	215, 333, 339, 410
Fnu4HI	GCNGC	3 cut(s)	84, 171, 322
FokI	GGATG	1 cut(s)	715
Fsp4HI	GCNGC	3 cut(s)	84, 171, 322
FspBI	CTAG	1 cut(s)	434
GluI	GCNGC	3 cut(s)	84, 171, 322
HaeIII	GGCC	5 cut(s)	143, 338, 360, 615, 641
HapII	CCGG	3 cut(s)	605, 625, 642
Hin1II	CATG	4 cut(s)	219, 337, 343, 414
HinfI	GANTC	2 cut(s)	452, 565
HpaII	CCGG	3 cut(s)	605, 625, 642
HphI	GGTGA	1 cut(s)	646
Hpy188I	TCNGA	2 cut(s)	303, 507
Hpy188III	TCNNGA	2 cut(s)	223, 562
HpyAV	CCTTC	1 cut(s)	192
HpyCH4III	ACNGT	2 cut(s)	621, 661
HpyCH4V	TGCA	6 cut(s)	107, 170, 215, 234, 252, 740
HpyF10VI	GCNNNNNNNGC	1 cut(s)	335
HpyF3I	CTNAG	3 cut(s)	317, 475, 534
Hsp92II	CATG	4 cut(s)	219, 337, 343, 414
KpnI	GGTACC	1 cut(s)	410
Kzo9I	GATC	1 cut(s)	283
LmnI	GCTCC	3 cut(s)	200, 684, 774
Lsp1109I	GCAGC	3 cut(s)	95, 182, 333
LweI	GCATC	1 cut(s)	221
MaeI	CTAG	1 cut(s)	434
MaeIII	GTNAC	4 cut(s)	56, 271, 634, 731
MalI	GATC	1 cut(s)	285
MboI	GATC	1 cut(s)	283
MboII	GAAGA	5 cut(s)	16, 19, 461, 537, 667
MhlI	GDGCHC	2 cut(s)	670, 681
MlsI	TGGCCA	1 cut(s)	338
MluCI	AATT	2 cut(s)	486, 550
MluNI	TGGCCA	1 cut(s)	338
MlyI	GAGTC	1 cut(s)	559
MnlI	CCTC	8 cut(s)	32, 52, 58, 112, 152, 197, 396, 739
Mox20I	TGGCCA	1 cut(s)	338
MscI	TGGCCA	1 cut(s)	338
MslI	CAYNNNNRTG	1 cut(s)	338
Msp20I	TGGCCA	1 cut(s)	338
MspA1I	CMGCKG	2 cut(s)	63, 173
MspI	CCGG	3 cut(s)	605, 625, 642
MspR9I	CCNGG	2 cut(s)	643, 699
MvaI	CCWGG	1 cut(s)	699
MwoI	GCNNNNNNNGC	1 cut(s)	335
NciI	CCSGG	1 cut(s)	643
NcoI	CCATGG	1 cut(s)	339
NdeII	GATC	1 cut(s)	283
NlaIII	CATG	4 cut(s)	219, 337, 343, 414
NlaIV	GGNNCC	6 cut(s)	71, 136, 265, 408, 603, 614
NmuCI	GTSAC	3 cut(s)	56, 634, 731
NspI	RCATGY	1 cut(s)	219
PaeI	GCATGC	1 cut(s)	219
PcsI	WCGNNNNNNNCGW	1 cut(s)	384
PfeI	GAWTC	1 cut(s)	452
PkrI	GCNGC	3 cut(s)	85, 172, 323
PleI	GAGTC	1 cut(s)	559
PpsI	GAGTC	1 cut(s)	559
Psp6I	CCWGG	1 cut(s)	697
PspGI	CCWGG	1 cut(s)	697
PspN4I	GGNNCC	6 cut(s)	71, 136, 265, 408, 603, 614
PspPI	GGNCC	3 cut(s)	264, 358, 613
PstNI	CAGNNNCTG	1 cut(s)	104
PvuII	CAGCTG	1 cut(s)	173
RsaI	GTAC	2 cut(s)	408, 647
RsaNI	GTAC	2 cut(s)	407, 646
RseI	CAYNNNNRTG	1 cut(s)	338
SatI	GCNGC	3 cut(s)	84, 171, 322
Sau3AI	GATC	1 cut(s)	283
Sau96I	GGNCC	3 cut(s)	264, 358, 613
SchI	GAGTC	1 cut(s)	559
ScrFI	CCNGG	2 cut(s)	643, 699
SduI	GDGCHC	2 cut(s)	670, 681
SetI	ASST	8 cut(s)	168, 175, 205, 331, 502, 540, 700, 779
SfaNI	GCATC	1 cut(s)	221
SfcI	CTRYAG	2 cut(s)	64, 617
SinI	GGWCC	1 cut(s)	264
SmiMI	CAYNNNNRTG	1 cut(s)	338
SphI	GCATGC	1 cut(s)	219
Sse9I	AATT	2 cut(s)	486, 550
SsiI	CCGC	1 cut(s)	61
SspMI	CTAG	1 cut(s)	434
StyD4I	CCNGG	2 cut(s)	641, 697
StyI	CCWWGG	4 cut(s)	78, 138, 144, 339
TaaI	ACNGT	2 cut(s)	621, 661
TaqI	TCGA	3 cut(s)	387, 455, 568
TasI	AATT	2 cut(s)	486, 550
TfiI	GAWTC	1 cut(s)	452
TseFI	GTSAC	3 cut(s)	56, 634, 731
TseI	GCWGC	3 cut(s)	83, 170, 321
Tsp45I	GTSAC	3 cut(s)	56, 634, 731
TspDTI	ATGAA	2 cut(s)	102, 322
VpaK11BI	GGWCC	1 cut(s)	264
XapI	RAATTY	1 cut(s)	486
XceI	RCATGY	1 cut(s)	219
XspI	CTAG	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.