Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013081

Physical Location & Seq

Genomic Coordinates Reverse (-)

17978422 .. 17979740

Gene Structure 1319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G38400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGCTGCAAGGCTTTCTCTTCCTCCTCTCAGTCGTACTCCTCTTCTCCTCATCTGCAGCCGCCTGCGACCGATGTCTTCACAGTTCTAAGGCAGCTTATTTCTCCTCTGCATCTGCTCTCTCCTCTGGAGCTTGTGCATATGGCTCTATGGCTACCGGTTTCTTCGCCGGACACATTGCTGCGGCTCTGCCTTCCATCTACAAAGACGGCTCCGGCTGCGGAGCTTGCTTCCAGGTCAGATGCAAGAACCCGACGCTTTGCAGCAGCAAAGGAACCACGGTGATTGTCACAGACTTGAACAAGACCAACCAAACCGATCTTGTCCTTAGCAGCAGAGCCTTTAGGGCCATGGCTAAGCCTGTTGTTGGCGCCGACAGAGATCTTCTCAAACAAGGCATTGTCGATATTGAATACAGGAGAGTTCCTTGCGATTACGGTAACAAGAAGATGAACGTGAGAGTTGAAGAATCAAGCAAAAATCCAAACTACTTGGCGATAAAGCTCTTGTACCAAGGAGGCCAAACTGAAGTGGTAGCCATTTACATTGCTCAGGTTGGTTCGTCACATTGGAGTTACATGACCAGAAGCCACGGAGCCGTGTGGGTTACTGACAAAGTACCCAACGGAGCTCTGCAGTTCAGGTTCGTGGTGACCGCAGGCTACGACGGCAAAATGGTCTGGTCGCAGAGGGTCCTTCCAGCTAACTGGGAAGCTGGAAAGTCCTATGACGCCGGCGTTCAGATCACAGACATTGCTCAGGAAGGTTGTGATCCATGCGACGATCACATCTGGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0005911 GO:0009505 GO:0009506 GO:0012505 GO:0016020 GO:0030054 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

265

Amino Acids

28.64

Weight (kDa)

8.48

Isoelectric Point (pI)

41.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	60 - 138	4.9e-14	Lytic transglycolase
Expansin_C	PF01357	151 - 233	1.1e-17	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45970 AT3G45970 AT4G38400
fragaria_vesca	FvH4_2g16110
malus_domestica	MD05G1130300.v1.1 MD10G1133200.v1.1
prunus_persica	Prupe.8G174500_v2.0.a1
pyrus_communis	pycom05g12690 pycom10g11500
rosa_chinensis	RchiOBHm_Chr6g0279781
rosa_laevigata	RLG00000013120
rosa_multiflora	Rmu_sc0001719.1_g000021
rosa_roxburghii	Rroxscaffold_7G00188660
rosa_rugosa	Rorug06G0128000
rosa_samantha	Rh6AG236200 Rh6BG240400 Rh6DG234100
rosa_wichuraiana	Rw6G020590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	368
AciI	CCGC	4 cut(s)	60, 182, 219, 654
AclWI	GGATC	1 cut(s)	764
AcuI	CTGAAG	1 cut(s)	546
AcyI	GRCGYC	2 cut(s)	369, 729
AfaI	GTAC	3 cut(s)	36, 509, 618
AfiI	CCNNNNNNNGG	1 cut(s)	365
AgeI	ACCGGT	1 cut(s)	155
AgsI	TTSAA	3 cut(s)	298, 410, 464
AjnI	CCWGG	1 cut(s)	231
AluBI	AGCT	7 cut(s)	95, 131, 224, 502, 629, 701, 713
AluI	AGCT	7 cut(s)	95, 131, 224, 502, 629, 701, 713
Alw21I	GWGCWC	1 cut(s)	631
AlwI	GGATC	1 cut(s)	764
AoxI	GGCC	2 cut(s)	345, 517
ApeKI	GCWGC	8 cut(s)	4, 56, 92, 179, 216, 261, 264, 330
AsiGI	ACCGGT	1 cut(s)	155
AspLEI	GCGC	1 cut(s)	371
AspS9I	GGNCC	2 cut(s)	345, 691
AsuHPI	GGTGA	2 cut(s)	292, 661
AvaII	GGWCC	1 cut(s)	691
BanI	GGYRCC	1 cut(s)	368
BanII	GRGCYC	1 cut(s)	631
BbsI	GAAGAC	1 cut(s)	68
Bbv12I	GWGCWC	1 cut(s)	631
BbvI	GCAGC	7 cut(s)	68, 104, 166, 203, 273, 276, 342
BccI	CCATC	1 cut(s)	203
BceAI	ACGGC	3 cut(s)	223, 581, 682
BciT130I	CCWGG	1 cut(s)	233
BfmI	CTRYAG	2 cut(s)	54, 632
BfoI	RGCGCY	1 cut(s)	372
BglI	GCCNNNNNGGC	1 cut(s)	344
BglII	AGATCT	1 cut(s)	379
BlpI	GCTNAGC	1 cut(s)	354
Bme1390I	CCNGG	1 cut(s)	233
Bme18I	GGWCC	1 cut(s)	691
BmgT120I	GGNCC	2 cut(s)	345, 691
BmiI	GGNNCC	5 cut(s)	211, 274, 370, 595, 692
BmrFI	CCNGG	1 cut(s)	233
BmrI	ACTGGG	1 cut(s)	715
BmsI	GCATC	2 cut(s)	119, 230
BmuI	ACTGGG	1 cut(s)	715
BoxI	GACNNNNGTC	1 cut(s)	72
BpiI	GAAGAC	1 cut(s)	68
BplI	GAGNNNNNCTC	2 cut(s)	369, 401
BpmI	CTGGAG	1 cut(s)	147
Bpu10I	CCTNAGC	3 cut(s)	326, 549, 756
Bpu1102I	GCTNAGC	1 cut(s)	354
BsaHI	GRCGYC	2 cut(s)	369, 729
BsaJI	CCNNGG	4 cut(s)	276, 348, 511, 589
BsaWI	WCCGGW	1 cut(s)	155
Bsc4I	CCNNNNNNNGG	1 cut(s)	365
Bse118I	RCCGGY	2 cut(s)	155, 731
Bse1I	ACTGG	1 cut(s)	710
Bse3DI	GCAATG	3 cut(s)	174, 543, 750
BseBI	CCWGG	1 cut(s)	233
BseDI	CCNNGG	4 cut(s)	276, 348, 511, 589
BseLI	CCNNNNNNNGG	1 cut(s)	365
BseMI	GCAATG	3 cut(s)	174, 543, 750
BseMII	CTCAG	3 cut(s)	42, 563, 770
BseNI	ACTGG	1 cut(s)	710
BseRI	GAGGAG	5 cut(s)	14, 29, 37, 94, 112
BseXI	GCAGC	7 cut(s)	68, 104, 166, 203, 273, 276, 342
Bsh1285I	CGRYCG	1 cut(s)	70
BshFI	GGCC	2 cut(s)	347, 519
BshNI	GGYRCC	1 cut(s)	368
BshTI	ACCGGT	1 cut(s)	155
BsiEI	CGRYCG	1 cut(s)	70
BsiHKAI	GWGCWC	1 cut(s)	631
BsiSI	CCGG	4 cut(s)	156, 168, 213, 732
BslI	CCNNNNNNNGG	1 cut(s)	365
BsnI	GGCC	2 cut(s)	347, 519
Bsp1286I	GDGCHC	1 cut(s)	631
Bsp143I	GATC	5 cut(s)	316, 379, 741, 769, 781
Bsp1720I	GCTNAGC	1 cut(s)	354
Bsp19I	CCATGG	1 cut(s)	348
BspACI	CCGC	4 cut(s)	60, 182, 219, 654
BspANI	GGCC	2 cut(s)	347, 519
BspCNI	CTCAG	3 cut(s)	41, 562, 769
BspLI	GGNNCC	5 cut(s)	211, 274, 370, 595, 692
BspMAI	CTGCAG	2 cut(s)	58, 636
BspPI	GGATC	1 cut(s)	764
BspT107I	GGYRCC	1 cut(s)	368
BsrDI	GCAATG	3 cut(s)	174, 543, 750
BsrFI	RCCGGY	2 cut(s)	155, 731
BsrI	ACTGG	1 cut(s)	710
BssAI	RCCGGY	2 cut(s)	155, 731
BssECI	CCNNGG	4 cut(s)	276, 348, 511, 589
BssMI	GATC	5 cut(s)	316, 379, 741, 769, 781
BssNI	GRCGYC	2 cut(s)	369, 729
BssT1I	CCWWGG	2 cut(s)	348, 511
Bst2UI	CCWGG	1 cut(s)	233
Bst4CI	ACNGT	3 cut(s)	83, 280, 437
Bst6I	CTCTTC	2 cut(s)	23, 47
BstACI	GRCGYC	2 cut(s)	369, 729
BstC8I	GCNNGC	4 cut(s)	64, 226, 658, 733
BstDEI	CTNAG	6 cut(s)	28, 87, 326, 354, 549, 756
BstDSI	CCRYGG	3 cut(s)	276, 348, 589
BstEII	GGTNACC	1 cut(s)	649
BstH2I	RGCGCY	1 cut(s)	372
BstHHI	GCGC	1 cut(s)	371
BstKTI	GATC	5 cut(s)	319, 382, 744, 772, 784
BstMBI	GATC	5 cut(s)	316, 379, 741, 769, 781
BstMCI	CGRYCG	1 cut(s)	70
BstMWI	GCNNNNNNNGC	4 cut(s)	216, 225, 344, 666
BstNI	CCWGG	1 cut(s)	233
BstPAI	GACNNNNGTC	1 cut(s)	72
BstPI	GGTNACC	1 cut(s)	649
BstSCI	CCNGG	1 cut(s)	231
BstSFI	CTRYAG	2 cut(s)	54, 632
BstV1I	GCAGC	7 cut(s)	68, 104, 166, 203, 273, 276, 342
BstV2I	GAAGAC	1 cut(s)	68
BstX2I	RGATCY	1 cut(s)	379
BstXI	CCANNNNNNTGG	1 cut(s)	705
BstYI	RGATCY	1 cut(s)	379
BsuRI	GGCC	2 cut(s)	347, 519
BtgI	CCRYGG	3 cut(s)	276, 348, 589
Cac8I	GCNNGC	4 cut(s)	64, 226, 658, 733
CfoI	GCGC	1 cut(s)	371
Cfr10I	RCCGGY	2 cut(s)	155, 731
Cfr13I	GGNCC	2 cut(s)	345, 691
CseI	GACGC	2 cut(s)	262, 737
Csp6I	GTAC	3 cut(s)	35, 508, 617
CspAI	ACCGGT	1 cut(s)	155
CspCI	CAANNNNNGTGG	2 cut(s)	265, 300
CviAII	CATG	3 cut(s)	349, 577, 774
CviQI	GTAC	3 cut(s)	35, 508, 617
DdeI	CTNAG	6 cut(s)	28, 87, 326, 354, 549, 756
DinI	GGCGCC	1 cut(s)	370
DpnI	GATC	5 cut(s)	318, 381, 743, 771, 783
DpnII	GATC	5 cut(s)	316, 379, 741, 769, 781
Eam1104I	CTCTTC	2 cut(s)	23, 47
EarI	CTCTTC	2 cut(s)	23, 47
Ecl136II	GAGCTC	1 cut(s)	629
Eco130I	CCWWGG	2 cut(s)	348, 511
Eco24I	GRGCYC	1 cut(s)	631
Eco47I	GGWCC	1 cut(s)	691
Eco53kI	GAGCTC	1 cut(s)	629
Eco57I	CTGAAG	1 cut(s)	546
Eco91I	GGTNACC	1 cut(s)	649
EcoICRI	GAGCTC	1 cut(s)	629
EcoO109I	RGGNCCY	1 cut(s)	691
EcoO65I	GGTNACC	1 cut(s)	649
EcoRII	CCWGG	1 cut(s)	231
EcoT14I	CCWWGG	2 cut(s)	348, 511
EcoT38I	GRGCYC	1 cut(s)	631
EgeI	GGCGCC	1 cut(s)	370
EheI	GGCGCC	1 cut(s)	370
ErhI	CCWWGG	2 cut(s)	348, 511
FaeI	CATG	3 cut(s)	352, 580, 777
FaiI	YATR	7 cut(s)	139, 141, 149, 350, 578, 726, 775
FatI	CATG	3 cut(s)	348, 576, 773
FauNDI	CATATG	1 cut(s)	139
FriOI	GRGCYC	1 cut(s)	631
GlaI	GCGC	1 cut(s)	370
GsuI	CTGGAG	1 cut(s)	147
HaeII	RGCGCY	1 cut(s)	372
HaeIII	GGCC	2 cut(s)	347, 519
HapII	CCGG	4 cut(s)	156, 168, 213, 732
HgaI	GACGC	2 cut(s)	262, 737
HhaI	GCGC	1 cut(s)	371
Hin1I	GRCGYC	2 cut(s)	369, 729
Hin1II	CATG	3 cut(s)	352, 580, 777
Hin6I	GCGC	1 cut(s)	369
HinP1I	GCGC	1 cut(s)	369
HinfI	GANTC	1 cut(s)	467
HpaII	CCGG	4 cut(s)	156, 168, 213, 732
HphI	GGTGA	2 cut(s)	292, 661
Hpy188I	TCNGA	2 cut(s)	239, 741
Hpy188III	TCNNGA	3 cut(s)	126, 758, 790
Hpy99I	CGWCG	3 cut(s)	256, 668, 782
HpyAV	CCTTC	3 cut(s)	201, 704, 755
HpyCH4III	ACNGT	3 cut(s)	83, 280, 437
HpyCH4IV	ACGT	1 cut(s)	453
HpyCH4V	TGCA	7 cut(s)	7, 56, 110, 137, 243, 261, 634
HpyF10VI	GCNNNNNNNGC	4 cut(s)	216, 225, 344, 666
HpyF3I	CTNAG	6 cut(s)	28, 87, 326, 354, 549, 756
HpySE526I	ACGT	1 cut(s)	453
Hsp92I	GRCGYC	2 cut(s)	369, 729
Hsp92II	CATG	3 cut(s)	352, 580, 777
HspAI	GCGC	1 cut(s)	369
KasI	GGCGCC	1 cut(s)	368
KroI	GCCGGC	1 cut(s)	731
KroNI	GCCGGC	1 cut(s)	733
Kzo9I	GATC	5 cut(s)	316, 379, 741, 769, 781
LmnI	GCTCC	5 cut(s)	128, 215, 221, 593, 626
Lsp1109I	GCAGC	7 cut(s)	68, 104, 166, 203, 273, 276, 342
LweI	GCATC	2 cut(s)	119, 230
MaeII	ACGT	1 cut(s)	453
MaeIII	GTNAC	6 cut(s)	286, 437, 561, 572, 604, 649
MalI	GATC	5 cut(s)	318, 381, 743, 771, 783
MboI	GATC	5 cut(s)	316, 379, 741, 769, 781
MboII	GAAGA	7 cut(s)	10, 34, 68, 154, 374, 457, 476
MflI	RGATCY	1 cut(s)	379
MhlI	GDGCHC	1 cut(s)	631
Mly113I	GGCGCC	1 cut(s)	369
MnlI	CCTC	8 cut(s)	32, 35, 50, 58, 115, 133, 509, 681
MreI	CGCCGGCG	1 cut(s)	731
MroNI	GCCGGC	1 cut(s)	731
MspI	CCGG	4 cut(s)	156, 168, 213, 732
MspR9I	CCNGG	1 cut(s)	233
MvaI	CCWGG	1 cut(s)	233
MwoI	GCNNNNNNNGC	4 cut(s)	216, 225, 344, 666
NaeI	GCCGGC	1 cut(s)	733
NarI	GGCGCC	1 cut(s)	369
NcoI	CCATGG	1 cut(s)	348
NdeI	CATATG	1 cut(s)	139
NdeII	GATC	5 cut(s)	316, 379, 741, 769, 781
NgoMIV	GCCGGC	1 cut(s)	731
NlaIII	CATG	3 cut(s)	352, 580, 777
NlaIV	GGNNCC	5 cut(s)	211, 274, 370, 595, 692
NmuCI	GTSAC	3 cut(s)	286, 561, 649
PdiI	GCCGGC	1 cut(s)	733
PfeI	GAWTC	1 cut(s)	467
PinAI	ACCGGT	1 cut(s)	155
PluTI	GGCGCC	1 cut(s)	372
PpuMI	RGGWCCY	1 cut(s)	691
PshAI	GACNNNNGTC	1 cut(s)	72
Psp124BI	GAGCTC	1 cut(s)	631
Psp5II	RGGWCCY	1 cut(s)	691
Psp6I	CCWGG	1 cut(s)	231
PspEI	GGTNACC	1 cut(s)	649
PspGI	CCWGG	1 cut(s)	231
PspN4I	GGNNCC	5 cut(s)	211, 274, 370, 595, 692
PspPI	GGNCC	2 cut(s)	345, 691
PspPPI	RGGWCCY	1 cut(s)	691
PstI	CTGCAG	2 cut(s)	58, 636
PsuI	RGATCY	1 cut(s)	379
RsaI	GTAC	3 cut(s)	36, 509, 618
RsaNI	GTAC	3 cut(s)	35, 508, 617
SacI	GAGCTC	1 cut(s)	631
Sau3AI	GATC	5 cut(s)	316, 379, 741, 769, 781
Sau96I	GGNCC	2 cut(s)	345, 691
ScrFI	CCNGG	1 cut(s)	233
SduI	GDGCHC	1 cut(s)	631
SfaNI	GCATC	2 cut(s)	119, 230
SfcI	CTRYAG	2 cut(s)	54, 632
SfoI	GGCGCC	1 cut(s)	370
SgrAI	CRCCGGYG	1 cut(s)	731
SinI	GGWCC	1 cut(s)	691
SsiI	CCGC	4 cut(s)	60, 182, 219, 654
SspDI	GGCGCC	1 cut(s)	368
SstI	GAGCTC	1 cut(s)	631
StyD4I	CCNGG	1 cut(s)	231
StyI	CCWWGG	2 cut(s)	348, 511
TaaI	ACNGT	3 cut(s)	83, 280, 437
TaiI	ACGT	1 cut(s)	456
TaqI	TCGA	1 cut(s)	402
TaqII	GACCGA	1 cut(s)	84
TauI	GCSGC	2 cut(s)	62, 185
TfiI	GAWTC	1 cut(s)	467
TseFI	GTSAC	3 cut(s)	286, 561, 649
TseI	GCWGC	8 cut(s)	4, 56, 92, 179, 216, 261, 264, 330
Tsp45I	GTSAC	3 cut(s)	286, 561, 649
TspDTI	ATGAA	1 cut(s)	464
TspGWI	ACGGA	2 cut(s)	606, 639
VpaK11BI	GGWCC	1 cut(s)	691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.