Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007649

Physical Location & Seq

Genomic Coordinates Reverse (-)

17095706 .. 17097465

Gene Structure 1760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G46460.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGAACTCACAAGCTTGTCTTCTTCTTCAGAAACAGCTTAAAGATCTTTGTAAGCATCCTGTAGATGGATTCTCTGCTGGTTTAGTTGATGAGAAGAATATATTCGAATGGAGCGTAACTATTATTGGACCTCCTGATACTCTCTATGAAGGAGGATTTTTCTATGCCATTATGTCATTCCCACAAAACTATCCTAATAGCCCACCTACGGTGCGGTTTACTTCAGATATTTGGCATCCTAACGTTTATCCCGATGGCCGCGTTTGTATATCTATTCTACATCCTCCTGGTGATGATCCAAGTGGATATGAGCTTGCAAGTGAGCGTTGGACGCCTGTTCACACAGTTGAGAGTATCATGTTGAGTATTATATCAATGCTCTCTGGTCCCAACGACGAATCTCCAGCAAACGTTGAGGCTGCTAAAGAATGGAGAGAGAAGAGAGATGAGTTCAAGAAGAAAGTGAGCCGTTGTGTCAGAAAGTCTCAAGAAATGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 ko05012 map04120 map04141 map05012

Pfam Domains

Protein Families

UQ_con

Protein Analysis

166

Amino Acids

18.82

Weight (kDa)

5.36

Isoelectric Point (pI)

47.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	8 - 116	4.1e-37	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46460 AT3G46460 AT3G46460 AT5G59300
fragaria_vesca	FvH4_3g35650 FvH4_3g35650
malus_domestica	MD00G1137800.v1.1 MD02G1182900.v1.1 MD11G1144800.v1.1
prunus_persica	Prupe.6G080700_v2.0.a1 Prupe.6G080700_v2.0.a1 Prupe.6G080700_v2.0.a1 Prupe.6G080700_v2.0.a1
pyrus_communis	pycom03g07960 pycom11g09270
rosa_chinensis	RchiOBHm_Chr5g0063821
rosa_laevigata	RLG00000035675
rosa_roxburghii	Rroxscaffold_1G00017010
rosa_rugosa	Rorug05G0360000 Rorug05G0360000
rosa_samantha	Rh5BG434800 Rh5CG457900 Rh5DG447700
rosa_wichuraiana	Rw5G039340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	261
AciI	CCGC	2 cut(s)	214, 259
AclI	AACGTT	2 cut(s)	243, 411
AclWI	GGATC	1 cut(s)	290
AcoI	YGGCCR	1 cut(s)	256
AcuI	CTGAAG	2 cut(s)	11, 207
AcyI	GRCGYC	1 cut(s)	332
AfiI	CCNNNNNNNGG	2 cut(s)	65, 208
AgsI	TTSAA	1 cut(s)	454
AjnI	CCWGG	1 cut(s)	286
AluBI	AGCT	3 cut(s)	14, 37, 313
AluI	AGCT	3 cut(s)	14, 37, 313
Alw26I	GTCTC	1 cut(s)	489
AlwI	GGATC	1 cut(s)	290
AoxI	GGCC	1 cut(s)	256
ApeKI	GCWGC	1 cut(s)	419
Asp700I	GAANNNNTTC	1 cut(s)	101
AspS9I	GGNCC	2 cut(s)	128, 386
AsuHPI	GGTGA	1 cut(s)	302
AsuII	TTCGAA	1 cut(s)	105
AvaII	GGWCC	2 cut(s)	128, 386
BbsI	GAAGAC	1 cut(s)	11
BbvI	GCAGC	1 cut(s)	406
BccI	CCATC	2 cut(s)	59, 248
BceAI	ACGGC	1 cut(s)	453
BciT130I	CCWGG	1 cut(s)	288
BcoDI	GTCTC	1 cut(s)	489
BfmI	CTRYAG	1 cut(s)	60
BglII	AGATCT	1 cut(s)	43
BisI	GCNGC	2 cut(s)	259, 420
BlsI	GCNGC	2 cut(s)	260, 421
Bme1390I	CCNGG	1 cut(s)	288
Bme18I	GGWCC	2 cut(s)	128, 386
BmgT120I	GGNCC	2 cut(s)	128, 386
BmiI	GGNNCC	1 cut(s)	388
BmrFI	CCNGG	1 cut(s)	288
BmsI	GCATC	2 cut(s)	64, 244
BpiI	GAAGAC	1 cut(s)	11
BpmI	CTGGAG	1 cut(s)	387
Bpu14I	TTCGAA	1 cut(s)	105
BpuEI	CTTGAG	1 cut(s)	471
BsaHI	GRCGYC	1 cut(s)	332
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 208
BseBI	CCWGG	1 cut(s)	288
BseGI	GGATG	3 cut(s)	55, 235, 280
BseLI	CCNNNNNNNGG	2 cut(s)	65, 208
BseXI	GCAGC	1 cut(s)	406
Bsh1236I	CGCG	1 cut(s)	261
BshFI	GGCC	1 cut(s)	258
BslFI	GGGAC	1 cut(s)	372
BslI	CCNNNNNNNGG	2 cut(s)	65, 208
BsmAI	GTCTC	1 cut(s)	489
BsmFI	GGGAC	1 cut(s)	372
BsnI	GGCC	1 cut(s)	258
Bsp119I	TTCGAA	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	43, 295
BspACI	CCGC	2 cut(s)	214, 259
BspANI	GGCC	1 cut(s)	258
BspFNI	CGCG	1 cut(s)	261
BspLI	GGNNCC	1 cut(s)	388
BspPI	GGATC	1 cut(s)	290
BspT104I	TTCGAA	1 cut(s)	105
BssMI	GATC	2 cut(s)	43, 295
BssNI	GRCGYC	1 cut(s)	332
Bst2UI	CCWGG	1 cut(s)	288
Bst4CI	ACNGT	2 cut(s)	211, 346
Bst6I	CTCTTC	1 cut(s)	434
BstACI	GRCGYC	1 cut(s)	332
BstBI	TTCGAA	1 cut(s)	105
BstC8I	GCNNGC	1 cut(s)	315
BstF5I	GGATG	3 cut(s)	55, 235, 280
BstFNI	CGCG	1 cut(s)	261
BstKTI	GATC	2 cut(s)	46, 298
BstMAI	GTCTC	1 cut(s)	489
BstMBI	GATC	2 cut(s)	43, 295
BstMWI	GCNNNNNNNGC	1 cut(s)	331
BstNI	CCWGG	1 cut(s)	288
BstSCI	CCNGG	1 cut(s)	286
BstSFI	CTRYAG	1 cut(s)	60
BstUI	CGCG	1 cut(s)	261
BstV1I	GCAGC	1 cut(s)	406
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	43
BsuRI	GGCC	1 cut(s)	258
BtsCI	GGATG	3 cut(s)	55, 235, 280
Cac8I	GCNNGC	1 cut(s)	315
Cfr13I	GGNCC	2 cut(s)	128, 386
CseI	GACGC	1 cut(s)	340
CviAII	CATG	1 cut(s)	358
CviJI	RGCY	7 cut(s)	14, 37, 201, 258, 313, 419, 468
CviKI_1	RGCY	7 cut(s)	14, 37, 201, 258, 313, 419, 468
DpnI	GATC	2 cut(s)	45, 297
DpnII	GATC	2 cut(s)	43, 295
EaeI	YGGCCR	1 cut(s)	256
Eam1104I	CTCTTC	1 cut(s)	434
EarI	CTCTTC	1 cut(s)	434
Eco47I	GGWCC	2 cut(s)	128, 386
Eco57I	CTGAAG	2 cut(s)	11, 207
EcoRII	CCWGG	1 cut(s)	286
FaeI	CATG	1 cut(s)	361
FaiI	YATR	8 cut(s)	101, 147, 165, 173, 269, 309, 359, 371
FalI	AAGNNNNNCTT	1 cut(s)	35
FaqI	GGGAC	1 cut(s)	372
FatI	CATG	1 cut(s)	357
Fnu4HI	GCNGC	2 cut(s)	259, 420
FokI	GGATG	3 cut(s)	42, 222, 267
Fsp4HI	GCNGC	2 cut(s)	259, 420
GluI	GCNGC	2 cut(s)	259, 420
GsuI	CTGGAG	1 cut(s)	387
HaeIII	GGCC	1 cut(s)	258
HgaI	GACGC	1 cut(s)	340
Hin1I	GRCGYC	1 cut(s)	332
Hin1II	CATG	1 cut(s)	361
HindIII	AAGCTT	1 cut(s)	12
HinfI	GANTC	2 cut(s)	69, 398
HphI	GGTGA	1 cut(s)	302
Hpy166II	GTNNAC	2 cut(s)	219, 340
Hpy188I	TCNGA	3 cut(s)	30, 226, 479
Hpy188III	TCNNGA	4 cut(s)	134, 251, 454, 488
Hpy8I	GTNNAC	2 cut(s)	219, 340
Hpy99I	CGWCG	1 cut(s)	398
HpyAV	CCTTC	1 cut(s)	143
HpyCH4III	ACNGT	2 cut(s)	211, 346
HpyCH4IV	ACGT	2 cut(s)	243, 411
HpyCH4V	TGCA	1 cut(s)	317
HpyF10VI	GCNNNNNNNGC	1 cut(s)	331
HpySE526I	ACGT	2 cut(s)	243, 411
Hsp92I	GRCGYC	1 cut(s)	332
Hsp92II	CATG	1 cut(s)	361
Kzo9I	GATC	2 cut(s)	43, 295
LmnI	GCTCC	1 cut(s)	111
LpnPI	CCDG	8 cut(s)	63, 72, 147, 273, 300, 348, 369, 417
Lsp1109I	GCAGC	1 cut(s)	406
LweI	GCATC	2 cut(s)	64, 244
MaeII	ACGT	2 cut(s)	243, 411
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	2 cut(s)	45, 297
MboI	GATC	2 cut(s)	43, 295
MboII	GAAGA	6 cut(s)	11, 14, 17, 106, 451, 469
MflI	RGATCY	1 cut(s)	43
MmeI	TCCRAC	1 cut(s)	308
MnlI	CCTC	4 cut(s)	141, 146, 294, 409
MroXI	GAANNNNTTC	1 cut(s)	101
MseI	TTAA	1 cut(s)	39
MspR9I	CCNGG	1 cut(s)	288
MvaI	CCWGG	1 cut(s)	288
MvnI	CGCG	1 cut(s)	261
MwoI	GCNNNNNNNGC	1 cut(s)	331
NdeII	GATC	2 cut(s)	43, 295
NlaIII	CATG	1 cut(s)	361
NlaIV	GGNNCC	1 cut(s)	388
NspV	TTCGAA	1 cut(s)	105
PcsI	WCGNNNNNNNCGW	2 cut(s)	111, 249
PdmI	GAANNNNTTC	1 cut(s)	101
PfeI	GAWTC	2 cut(s)	69, 398
PkrI	GCNGC	2 cut(s)	260, 421
Psp1406I	AACGTT	2 cut(s)	243, 411
Psp6I	CCWGG	1 cut(s)	286
PspGI	CCWGG	1 cut(s)	286
PspN4I	GGNNCC	1 cut(s)	388
PspPI	GGNCC	2 cut(s)	128, 386
PsuI	RGATCY	1 cut(s)	43
SaqAI	TTAA	1 cut(s)	39
SatI	GCNGC	2 cut(s)	259, 420
Sau3AI	GATC	2 cut(s)	43, 295
Sau96I	GGNCC	2 cut(s)	128, 386
ScrFI	CCNGG	1 cut(s)	288
SetI	ASST	7 cut(s)	16, 39, 133, 208, 246, 315, 414
SfaNI	GCATC	2 cut(s)	64, 244
SfcI	CTRYAG	1 cut(s)	60
SfuI	TTCGAA	1 cut(s)	105
SinI	GGWCC	2 cut(s)	128, 386
SmlI	CTYRAG	1 cut(s)	486
SmoI	CTYRAG	1 cut(s)	486
SsiI	CCGC	2 cut(s)	214, 259
StyD4I	CCNGG	1 cut(s)	286
TaaI	ACNGT	2 cut(s)	211, 346
TaiI	ACGT	2 cut(s)	246, 414
TaqI	TCGA	1 cut(s)	105
TauI	GCSGC	1 cut(s)	261
TfiI	GAWTC	2 cut(s)	69, 398
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TseI	GCWGC	1 cut(s)	419
TspDTI	ATGAA	2 cut(s)	17, 162
VpaK11BI	GGWCC	2 cut(s)	128, 386
XmnI	GAANNNNTTC	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.