Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0007649

Physical Location & Seq

Genomic Coordinates Reverse (-)

70096242 .. 70099460

Gene Structure 3219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035675

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGCGGCCTCTCAAGCAAGCCTTCTCCTCCAGAAACAGCTCAAAGATCTTTGCAAGAACCCTGTGGATGGGTTCTCGGCGGGGCTGGTCGATGAGAACAATATCTTTGAGTGGAGCGTCACAATTATCGGACCTCCCGATACGCTATATGAGGGAGGATTTTTCAACGCCATCATGAGTTTTCCTTCTAATTACCCGAACAGCCCTCCAACAGTGAAGTTTACTTCGGAGTTATGGCATCCAAATGTTTATCCTGATGGGCGTGTTTGCATTTCCATTCTTCATCCGCCTGGTGATGATCCAAATGGTTATGAGCTTGCAAGTGAGCGTTGGACACCTGTGCATACGGTTGAAAGCATAGTTTTGAGTATAATATCAATGCTATCCAGTCCAAATGACGAATCTCCTGCAAATGTTGAAGCTGCTAAGGAATGGAGAGATCGGAGAGATGATTTCAAGAAGAAGGTCGGCCGTTGTGTGAGAAAGTCACAAGAGATGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 ko05012 map04120 map04141 map05012

Pfam Domains

Protein Families

UQ_con

Protein Analysis

168

Amino Acids

18.65

Weight (kDa)

5.04

Isoelectric Point (pI)

43.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	10 - 159	5e-51	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46460 AT3G46460 AT3G46460 AT5G59300
fragaria_vesca	FvH4_3g35650 FvH4_3g35650
malus_domestica	MD00G1137800.v1.1 MD02G1182900.v1.1 MD11G1144800.v1.1
prunus_persica	Prupe.6G080700_v2.0.a1 Prupe.6G080700_v2.0.a1 Prupe.6G080700_v2.0.a1 Prupe.6G080700_v2.0.a1
pyrus_communis	pycom03g07960 pycom11g09270
rosa_chinensis	RchiOBHm_Chr5g0063821
rosa_laevigata	RLG00000035675
rosa_roxburghii	Rroxscaffold_1G00017010
rosa_rugosa	Rorug05G0360000 Rorug05G0360000
rosa_samantha	Rh5BG434800 Rh5CG457900 Rh5DG447700
rosa_wichuraiana	Rw5G039340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	5, 80, 287
AclWI	GGATC	1 cut(s)	293
AcoI	YGGCCR	1 cut(s)	469
AfiI	CCNNNNNNNGG	1 cut(s)	68
AgsI	TTSAA	4 cut(s)	166, 353, 419, 457
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	3 cut(s)	40, 316, 422
AluI	AGCT	3 cut(s)	40, 316, 422
AlwI	GGATC	1 cut(s)	293
AoxI	GGCC	2 cut(s)	6, 469
ApeKI	GCWGC	1 cut(s)	422
AspS9I	GGNCC	1 cut(s)	131
AsuHPI	GGTGA	1 cut(s)	305
AvaII	GGWCC	1 cut(s)	131
BbvI	GCAGC	1 cut(s)	409
BccI	CCATC	3 cut(s)	62, 179, 251
BceAI	ACGGC	1 cut(s)	456
BcgI	CGANNNNNNTGC	2 cut(s)	389, 423
BciT130I	CCWGG	1 cut(s)	291
BglII	AGATCT	1 cut(s)	46
BisI	GCNGC	2 cut(s)	6, 423
BlsI	GCNGC	2 cut(s)	7, 424
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	131
BmrFI	CCNGG	1 cut(s)	291
BmsI	GCATC	1 cut(s)	247
BpmI	CTGGAG	1 cut(s)	14
Bpu10I	CCTNAGC	1 cut(s)	426
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
Bse1I	ACTGG	1 cut(s)	387
BseBI	CCWGG	1 cut(s)	291
BseGI	GGATG	3 cut(s)	73, 238, 283
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseNI	ACTGG	1 cut(s)	387
BseRI	GAGGAG	1 cut(s)	17
BseX3I	CGGCCG	1 cut(s)	469
BseXI	GCAGC	1 cut(s)	409
Bsh1285I	CGRYCG	1 cut(s)	472
BshFI	GGCC	2 cut(s)	8, 471
BsiEI	CGRYCG	1 cut(s)	472
BslI	CCNNNNNNNGG	1 cut(s)	68
BsnI	GGCC	2 cut(s)	8, 471
Bsp143I	GATC	3 cut(s)	46, 298, 439
BspACI	CCGC	3 cut(s)	5, 80, 287
BspANI	GGCC	2 cut(s)	8, 471
BspHI	TCATGA	1 cut(s)	174
BspPI	GGATC	1 cut(s)	293
BsrI	ACTGG	1 cut(s)	387
BssMI	GATC	3 cut(s)	46, 298, 439
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	2 cut(s)	214, 349
BstC8I	GCNNGC	2 cut(s)	19, 318
BstDEI	CTNAG	1 cut(s)	426
BstF5I	GGATG	3 cut(s)	73, 238, 283
BstKTI	GATC	3 cut(s)	49, 301, 442
BstMBI	GATC	3 cut(s)	46, 298, 439
BstMCI	CGRYCG	1 cut(s)	472
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstNI	CCWGG	1 cut(s)	291
BstSCI	CCNGG	1 cut(s)	289
BstV1I	GCAGC	1 cut(s)	409
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
BstZI	CGGCCG	1 cut(s)	469
BsuRI	GGCC	2 cut(s)	8, 471
BtsCI	GGATG	3 cut(s)	73, 238, 283
BtsIMutI	CAGTG	1 cut(s)	219
Cac8I	GCNNGC	2 cut(s)	19, 318
CciI	TCATGA	1 cut(s)	174
Cfr13I	GGNCC	1 cut(s)	131
CseI	GACGC	1 cut(s)	106
CviAII	CATG	1 cut(s)	175
CviJI	RGCY	8 cut(s)	8, 21, 40, 85, 204, 316, 422, 471
CviKI_1	RGCY	8 cut(s)	8, 21, 40, 85, 204, 316, 422, 471
DdeI	CTNAG	1 cut(s)	426
DpnI	GATC	3 cut(s)	48, 300, 441
DpnII	GATC	3 cut(s)	46, 298, 439
EaeI	YGGCCR	1 cut(s)	469
EagI	CGGCCG	1 cut(s)	469
EciI	GGCGGA	1 cut(s)	276
EclXI	CGGCCG	1 cut(s)	469
Eco47I	GGWCC	1 cut(s)	131
Eco52I	CGGCCG	1 cut(s)	469
EcoRII	CCWGG	1 cut(s)	289
FaeI	CATG	1 cut(s)	178
FaiI	YATR	8 cut(s)	148, 150, 176, 235, 312, 345, 359, 371
FalI	AAGNNNNNCTT	1 cut(s)	38
FatI	CATG	1 cut(s)	174
FauI	CCCGC	1 cut(s)	73
Fnu4HI	GCNGC	2 cut(s)	6, 423
FokI	GGATG	3 cut(s)	80, 225, 270
Fsp4HI	GCNGC	2 cut(s)	6, 423
GluI	GCNGC	2 cut(s)	6, 423
GsuI	CTGGAG	1 cut(s)	14
HaeIII	GGCC	2 cut(s)	8, 471
HgaI	GACGC	1 cut(s)	106
Hin1II	CATG	1 cut(s)	178
HinfI	GANTC	1 cut(s)	401
HphI	GGTGA	1 cut(s)	305
Hpy166II	GTNNAC	1 cut(s)	222
Hpy188I	TCNGA	3 cut(s)	131, 229, 444
Hpy188III	TCNNGA	5 cut(s)	31, 137, 175, 254, 457
Hpy8I	GTNNAC	1 cut(s)	222
HpyAV	CCTTC	3 cut(s)	32, 195, 457
HpyCH4III	ACNGT	2 cut(s)	214, 349
HpyCH4V	TGCA	5 cut(s)	54, 270, 320, 343, 410
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	1 cut(s)	426
Hsp92II	CATG	1 cut(s)	178
Kzo9I	GATC	3 cut(s)	46, 298, 439
LmnI	GCTCC	1 cut(s)	114
LpnPI	CCDG	9 cut(s)	44, 71, 75, 267, 276, 303, 351, 400, 420
Lsp1109I	GCAGC	1 cut(s)	409
LweI	GCATC	1 cut(s)	247
MaeIII	GTNAC	2 cut(s)	118, 486
MalI	GATC	3 cut(s)	48, 300, 441
MboI	GATC	3 cut(s)	46, 298, 439
MboII	GAAGA	2 cut(s)	272, 472
MflI	RGATCY	1 cut(s)	46
MluCI	AATT	2 cut(s)	123, 190
MmeI	TCCRAC	2 cut(s)	233, 311
MnlI	CCTC	6 cut(s)	19, 38, 144, 145, 149, 216
MslI	CAYNNNNRTG	1 cut(s)	243
MspR9I	CCNGG	1 cut(s)	291
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	1 cut(s)	14
NdeII	GATC	3 cut(s)	46, 298, 439
NlaIII	CATG	1 cut(s)	178
NmeAIII	GCCGAG	1 cut(s)	56
NmuCI	GTSAC	2 cut(s)	118, 486
PagI	TCATGA	1 cut(s)	174
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	401
PkrI	GCNGC	2 cut(s)	7, 424
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspPI	GGNCC	1 cut(s)	131
PsuI	RGATCY	1 cut(s)	46
RseI	CAYNNNNRTG	1 cut(s)	243
SatI	GCNGC	2 cut(s)	6, 423
Sau3AI	GATC	3 cut(s)	46, 298, 439
Sau96I	GGNCC	1 cut(s)	131
ScrFI	CCNGG	1 cut(s)	291
SetI	ASST	6 cut(s)	42, 136, 318, 340, 424, 468
SfaNI	GCATC	1 cut(s)	247
SinI	GGWCC	1 cut(s)	131
SmiMI	CAYNNNNRTG	1 cut(s)	243
SmlI	CTYRAG	1 cut(s)	12
SmoI	CTYRAG	1 cut(s)	12
Sse9I	AATT	2 cut(s)	123, 190
SsiI	CCGC	3 cut(s)	5, 80, 287
StyD4I	CCNGG	1 cut(s)	289
TaaI	ACNGT	2 cut(s)	214, 349
TaqI	TCGA	1 cut(s)	90
TasI	AATT	2 cut(s)	123, 190
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	401
TscAI	CASTG	1 cut(s)	219
TseFI	GTSAC	2 cut(s)	118, 486
TseI	GCWGC	1 cut(s)	422
Tsp45I	GTSAC	2 cut(s)	118, 486
TspDTI	ATGAA	1 cut(s)	272
TspRI	CASTG	1 cut(s)	219
VpaK11BI	GGWCC	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.