Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007649

Physical Location & Seq

Genomic Coordinates Reverse (-)

23919868 .. 23921193

Gene Structure 1326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G59300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCTTCGCAAGCTAGCCTTCTCCTTCAGAAACAACTCAAAGATCTCTGTAAGCATCCTGTTGATGGATTCTCTGCTGGTCTCGTTGATGAGAAGAATATATTCGAATGGAGCGTTACCATTATCGGACCTCCTGATACTCTCTATGAAGGAGGATTCTTTAACGCGATTATGACATTTCCGCAAAACTATCCGAATAGTCCGCCAACCGTGAGGTTTACTTCGGATATGTGGCATCCTAACGTTTATTCTGATGGTCGTGTTTGCATATCTATTCTTCATCCTCCCGGTGATGATCCTAGCGGTTATGAGCTTGCAAGCGAGCGTTGGACTCCTGTTCATACAGTTGAGAGTATTATGTTGAGTATCATATCAATGCTTTCTGGTCCTAACGATGAGTCTCCAGCAAATGTTGAAGCTGCCAAAGAATGGCGAGATAAGAGAGATGAGTTCAAGAAGAAAGTGAGCCGTTGTGTCAGAAAGTCTCAAGAAATGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 ko05012 map04120 map04141 map05012

Pfam Domains

Protein Families

UQ_con

Protein Analysis

166

Amino Acids

18.72

Weight (kDa)

5.35

Isoelectric Point (pI)

38.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	9 - 158	5.7e-52	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46460 AT3G46460 AT3G46460 AT5G59300
fragaria_vesca	FvH4_3g35650 FvH4_3g35650
malus_domestica	MD00G1137800.v1.1 MD02G1182900.v1.1 MD11G1144800.v1.1
prunus_persica	Prupe.6G080700_v2.0.a1 Prupe.6G080700_v2.0.a1 Prupe.6G080700_v2.0.a1 Prupe.6G080700_v2.0.a1
pyrus_communis	pycom03g07960 pycom11g09270
rosa_chinensis	RchiOBHm_Chr5g0063821
rosa_laevigata	RLG00000035675
rosa_roxburghii	Rroxscaffold_1G00017010
rosa_rugosa	Rorug05G0360000 Rorug05G0360000
rosa_samantha	Rh5BG434800 Rh5CG457900 Rh5DG447700
rosa_wichuraiana	Rw5G039340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	429
AccII	CGCG	1 cut(s)	167
AciI	CCGC	3 cut(s)	182, 203, 303
AclI	AACGTT	1 cut(s)	243
AclWI	GGATC	1 cut(s)	290
AcuI	CTGAAG	1 cut(s)	11
AfiI	CCNNNNNNNGG	2 cut(s)	65, 429
AgsI	TTSAA	2 cut(s)	416, 454
AluBI	AGCT	3 cut(s)	14, 313, 419
AluI	AGCT	3 cut(s)	14, 313, 419
Alw26I	GTCTC	3 cut(s)	86, 405, 489
AlwI	GGATC	1 cut(s)	290
ApeKI	GCWGC	1 cut(s)	419
Asp700I	GAANNNNTTC	1 cut(s)	101
AspS9I	GGNCC	2 cut(s)	128, 386
AsuC2I	CCSGG	1 cut(s)	288
AsuHPI	GGTGA	1 cut(s)	302
AsuII	TTCGAA	1 cut(s)	105
AsuNHI	GCTAGC	1 cut(s)	14
AvaII	GGWCC	2 cut(s)	128, 386
BbvI	GCAGC	1 cut(s)	406
BccI	CCATC	2 cut(s)	59, 248
BceAI	ACGGC	1 cut(s)	453
BcnI	CCSGG	1 cut(s)	288
BcoDI	GTCTC	3 cut(s)	86, 405, 489
BfaI	CTAG	2 cut(s)	15, 300
BglII	AGATCT	1 cut(s)	43
BisI	GCNGC	1 cut(s)	420
BlsI	GCNGC	1 cut(s)	421
Bme1390I	CCNGG	1 cut(s)	288
Bme18I	GGWCC	2 cut(s)	128, 386
BmgT120I	GGNCC	2 cut(s)	128, 386
BmrFI	CCNGG	1 cut(s)	288
BmsI	GCATC	2 cut(s)	64, 244
BmtI	GCTAGC	1 cut(s)	18
BpmI	CTGGAG	1 cut(s)	387
Bpu14I	TTCGAA	1 cut(s)	105
BpuEI	CTTGAG	1 cut(s)	471
BpuMI	CCSGG	1 cut(s)	288
BsaI	GGTCTC	1 cut(s)	86
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 429
BseGI	GGATG	3 cut(s)	55, 235, 280
BseLI	CCNNNNNNNGG	2 cut(s)	65, 429
BseXI	GCAGC	1 cut(s)	406
Bsh1236I	CGCG	1 cut(s)	167
BsiSI	CCGG	1 cut(s)	288
BslI	CCNNNNNNNGG	2 cut(s)	65, 429
BsmAI	GTCTC	3 cut(s)	86, 405, 489
Bso31I	GGTCTC	1 cut(s)	86
Bsp119I	TTCGAA	1 cut(s)	105
Bsp143I	GATC	2 cut(s)	43, 295
BspACI	CCGC	3 cut(s)	182, 203, 303
BspFNI	CGCG	1 cut(s)	167
BspOI	GCTAGC	1 cut(s)	18
BspPI	GGATC	1 cut(s)	290
BspT104I	TTCGAA	1 cut(s)	105
BspTNI	GGTCTC	1 cut(s)	86
BssMI	GATC	2 cut(s)	43, 295
Bst4CI	ACNGT	2 cut(s)	211, 346
BstBI	TTCGAA	1 cut(s)	105
BstC8I	GCNNGC	5 cut(s)	12, 16, 315, 319, 323
BstF5I	GGATG	3 cut(s)	55, 235, 280
BstFNI	CGCG	1 cut(s)	167
BstKTI	GATC	2 cut(s)	46, 298
BstMAI	GTCTC	3 cut(s)	86, 405, 489
BstMBI	GATC	2 cut(s)	43, 295
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstSCI	CCNGG	1 cut(s)	286
BstUI	CGCG	1 cut(s)	167
BstV1I	GCAGC	1 cut(s)	406
BstX2I	RGATCY	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	43
BtsCI	GGATG	3 cut(s)	55, 235, 280
Cac8I	GCNNGC	5 cut(s)	12, 16, 315, 319, 323
Cfr13I	GGNCC	2 cut(s)	128, 386
CviJI	RGCY	6 cut(s)	5, 14, 18, 313, 419, 468
CviKI_1	RGCY	6 cut(s)	5, 14, 18, 313, 419, 468
DpnI	GATC	2 cut(s)	45, 297
DpnII	GATC	2 cut(s)	43, 295
EciI	GGCGGA	1 cut(s)	192
Eco31I	GGTCTC	1 cut(s)	86
Eco47I	GGWCC	2 cut(s)	128, 386
Eco57I	CTGAAG	1 cut(s)	11
FaiI	YATR	9 cut(s)	101, 147, 173, 230, 269, 309, 342, 359, 371
FalI	AAGNNNNNCTT	1 cut(s)	35
Fnu4HI	GCNGC	1 cut(s)	420
FokI	GGATG	3 cut(s)	42, 222, 267
Fsp4HI	GCNGC	1 cut(s)	420
FspBI	CTAG	2 cut(s)	15, 300
GluI	GCNGC	1 cut(s)	420
GsuI	CTGGAG	1 cut(s)	387
HapII	CCGG	1 cut(s)	288
HinfI	GANTC	4 cut(s)	69, 156, 331, 398
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	1 cut(s)	302
Hpy166II	GTNNAC	1 cut(s)	219
Hpy188I	TCNGA	6 cut(s)	30, 128, 195, 226, 253, 479
Hpy188III	TCNNGA	3 cut(s)	134, 454, 488
Hpy8I	GTNNAC	1 cut(s)	219
HpyAV	CCTTC	3 cut(s)	29, 35, 143
HpyCH4III	ACNGT	2 cut(s)	211, 346
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	2 cut(s)	267, 317
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpySE526I	ACGT	1 cut(s)	243
Kzo9I	GATC	2 cut(s)	43, 295
LmnI	GCTCC	1 cut(s)	111
LpnPI	CCDG	7 cut(s)	63, 72, 147, 301, 348, 369, 417
Lsp1109I	GCAGC	1 cut(s)	406
LweI	GCATC	2 cut(s)	64, 244
MaeI	CTAG	2 cut(s)	15, 300
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	2 cut(s)	45, 297
MboI	GATC	2 cut(s)	43, 295
MboII	GAAGA	3 cut(s)	106, 269, 469
MflI	RGATCY	1 cut(s)	43
MlyI	GAGTC	2 cut(s)	325, 407
MmeI	TCCRAC	1 cut(s)	308
MnlI	CCTC	4 cut(s)	141, 146, 207, 294
MroXI	GAANNNNTTC	1 cut(s)	101
MseI	TTAA	1 cut(s)	162
MslI	CAYNNNNRTG	1 cut(s)	374
MspI	CCGG	1 cut(s)	288
MspR9I	CCNGG	1 cut(s)	288
MvnI	CGCG	1 cut(s)	167
MwoI	GCNNNNNNNGC	1 cut(s)	11
NciI	CCSGG	1 cut(s)	288
NdeII	GATC	2 cut(s)	43, 295
NheI	GCTAGC	1 cut(s)	14
NspV	TTCGAA	1 cut(s)	105
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PdmI	GAANNNNTTC	1 cut(s)	101
PfeI	GAWTC	2 cut(s)	69, 156
PflMI	CCANNNNNTGG	1 cut(s)	429
PkrI	GCNGC	1 cut(s)	421
PleI	GAGTC	2 cut(s)	325, 406
PpsI	GAGTC	2 cut(s)	325, 406
Psp1406I	AACGTT	1 cut(s)	243
PspPI	GGNCC	2 cut(s)	128, 386
PsuI	RGATCY	1 cut(s)	43
RseI	CAYNNNNRTG	1 cut(s)	374
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	1 cut(s)	420
Sau3AI	GATC	2 cut(s)	43, 295
Sau96I	GGNCC	2 cut(s)	128, 386
SchI	GAGTC	2 cut(s)	325, 407
ScrFI	CCNGG	1 cut(s)	288
SetI	ASST	6 cut(s)	16, 133, 218, 246, 315, 421
SfaNI	GCATC	2 cut(s)	64, 244
SfuI	TTCGAA	1 cut(s)	105
SinI	GGWCC	2 cut(s)	128, 386
SmiMI	CAYNNNNRTG	1 cut(s)	374
SmlI	CTYRAG	1 cut(s)	486
SmoI	CTYRAG	1 cut(s)	486
SsiI	CCGC	3 cut(s)	182, 203, 303
SspMI	CTAG	2 cut(s)	15, 300
StyD4I	CCNGG	1 cut(s)	286
TaaI	ACNGT	2 cut(s)	211, 346
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	1 cut(s)	105
TfiI	GAWTC	2 cut(s)	69, 156
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TseI	GCWGC	1 cut(s)	419
TspDTI	ATGAA	3 cut(s)	162, 269, 329
Van91I	CCANNNNNTGG	1 cut(s)	429
VpaK11BI	GGWCC	2 cut(s)	128, 386
XmnI	GAANNNNTTC	1 cut(s)	101
XspI	CTAG	2 cut(s)	15, 300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.