Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0007649

Physical Location & Seq

Genomic Coordinates Forward (+)

6364043 .. 6368257

Gene Structure 4215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g07960.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGAATCGCCGTTCACCGACCCCATCACAAGATACACACGCAAGTGTCGGCTTTAGAAATCTCTCTATCTTTCTCTCTCGTCTCTCTTTCTCTCTCTACACCGTCGCGGGAGAGCTCCACCGCCGATTCATGGCGGCGACGCAGGCGAGTCTTCTCCTCCAGAAACAGCTCAAGGATCTTTGCAAGAACCCGGTCGACGGATTCTCGGCCGGTCTGGTCGATGAAAACAATATCTTTGAGTGGAGCGTCACGATTATCGGACCGCCTGATACGCTCTATGAGGGGGGATTTTTCAATGCCATCATGAGCTTTCCAAATAATTATCCGAACAGCCCTCCGACGGTTAAGTTTACTTCCGAGATATGGCATCCAAATGTTTATACTGATGGGCGTGTTTGCATATCTATTCTTCACCCCCCCGGTGAGGACCCAAATGGTTATGAGCTTGCAAGTGAGCGCTGGACACCTGTCCATACGGTTGAAAGCATAGTCTTGAGTATAATATCAATGCTATCCAGTCCAAATGATGAATCTCCTGCAAATGTTGAAGCTGCAAAGCAGTGGAGAGATCGGAGAGAGGAATTCAAGAAAAAGGTCAGTCGCTGCGTGAGGAAATCACAGGAGATGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 ko05012 map04120 map04141 map05012

Pfam Domains

Protein Families

UQ_con

Protein Analysis

211

Amino Acids

23.71

Weight (kDa)

6.52

Isoelectric Point (pI)

51.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46460 AT3G46460 AT3G46460 AT5G59300
fragaria_vesca	FvH4_3g35650 FvH4_3g35650
malus_domestica	MD00G1137800.v1.1 MD02G1182900.v1.1 MD11G1144800.v1.1
prunus_persica	Prupe.6G080700_v2.0.a1 Prupe.6G080700_v2.0.a1 Prupe.6G080700_v2.0.a1 Prupe.6G080700_v2.0.a1
pyrus_communis	pycom03g07960 pycom11g09270
rosa_chinensis	RchiOBHm_Chr5g0063821
rosa_laevigata	RLG00000035675
rosa_roxburghii	Rroxscaffold_1G00017010
rosa_rugosa	Rorug05G0360000 Rorug05G0360000
rosa_samantha	Rh5BG434800 Rh5CG457900 Rh5DG447700
rosa_wichuraiana	Rw5G039340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	195
AccII	CGCG	1 cut(s)	107
AciI	CCGC	4 cut(s)	107, 121, 134, 263
AclWI	GGATC	1 cut(s)	183
AcoI	YGGCCR	1 cut(s)	207
AcsI	RAATTY	1 cut(s)	581
AfeI	AGCGCT	1 cut(s)	458
AfiI	CCNNNNNNNGG	5 cut(s)	130, 197, 340, 363, 424
AgsI	TTSAA	4 cut(s)	295, 482, 548, 586
AleI	CACNNNNGTG	1 cut(s)	42
AluBI	AGCT	5 cut(s)	115, 169, 309, 445, 551
AluI	AGCT	5 cut(s)	115, 169, 309, 445, 551
Alw21I	GWGCWC	1 cut(s)	117
Alw26I	GTCTC	1 cut(s)	86
AlwI	GGATC	1 cut(s)	183
AlwNI	CAGNNNCTG	1 cut(s)	603
Aor51HI	AGCGCT	1 cut(s)	458
AoxI	GGCC	1 cut(s)	207
ApeKI	GCWGC	2 cut(s)	551, 603
ApoI	RAATTY	1 cut(s)	581
AspLEI	GCGC	1 cut(s)	459
AspS9I	GGNCC	2 cut(s)	260, 427
AsuC2I	CCSGG	2 cut(s)	191, 420
AsuHPI	GGTGA	3 cut(s)	6, 404, 434
AvaII	GGWCC	2 cut(s)	260, 427
BanII	GRGCYC	1 cut(s)	117
BbsI	GAAGAC	1 cut(s)	143
Bbv12I	GWGCWC	1 cut(s)	117
BbvI	GCAGC	2 cut(s)	538, 590
BccI	CCATC	3 cut(s)	31, 308, 380
BcnI	CCSGG	2 cut(s)	191, 420
BcoDI	GTCTC	1 cut(s)	86
BfoI	RGCGCY	1 cut(s)	460
BisI	GCNGC	3 cut(s)	135, 552, 604
BlsI	GCNGC	3 cut(s)	136, 553, 605
Bme1390I	CCNGG	2 cut(s)	191, 420
Bme18I	GGWCC	2 cut(s)	260, 427
BmgT120I	GGNCC	2 cut(s)	260, 427
BmiI	GGNNCC	1 cut(s)	429
BmrFI	CCNGG	2 cut(s)	191, 420
BmsI	GCATC	2 cut(s)	376, 615
BoxI	GACNNNNGTC	1 cut(s)	467
BpiI	GAAGAC	1 cut(s)	143
BpmI	CTGGAG	1 cut(s)	143
BpuEI	CTTGAG	2 cut(s)	155, 514
BpuMI	CCSGG	2 cut(s)	191, 420
BsaJI	CCNNGG	1 cut(s)	418
Bsc4I	CCNNNNNNNGG	5 cut(s)	130, 197, 340, 363, 424
Bse118I	RCCGGY	1 cut(s)	209
Bse1I	ACTGG	1 cut(s)	516
BseDI	CCNNGG	1 cut(s)	418
BseGI	GGATG	1 cut(s)	367
BseLI	CCNNNNNNNGG	5 cut(s)	130, 197, 340, 363, 424
BseNI	ACTGG	1 cut(s)	516
BseRI	GAGGAG	1 cut(s)	146
BseX3I	CGGCCG	1 cut(s)	207
BseXI	GCAGC	2 cut(s)	538, 590
Bsh1236I	CGCG	1 cut(s)	107
Bsh1285I	CGRYCG	2 cut(s)	195, 210
BshFI	GGCC	1 cut(s)	209
BsiEI	CGRYCG	2 cut(s)	195, 210
BsiHKAI	GWGCWC	1 cut(s)	117
BsiSI	CCGG	3 cut(s)	191, 210, 420
BslI	CCNNNNNNNGG	5 cut(s)	130, 197, 340, 363, 424
BsmAI	GTCTC	1 cut(s)	86
BsmBI	CGTCTC	1 cut(s)	86
BsnI	GGCC	1 cut(s)	209
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp143I	GATC	2 cut(s)	175, 568
BspACI	CCGC	4 cut(s)	107, 121, 134, 263
BspANI	GGCC	1 cut(s)	209
BspFNI	CGCG	1 cut(s)	107
BspHI	TCATGA	1 cut(s)	303
BspLI	GGNNCC	1 cut(s)	429
BspPI	GGATC	1 cut(s)	183
BsrFI	RCCGGY	1 cut(s)	209
BsrI	ACTGG	1 cut(s)	516
BssAI	RCCGGY	1 cut(s)	209
BssECI	CCNNGG	1 cut(s)	418
BssMI	GATC	2 cut(s)	175, 568
Bst4CI	ACNGT	3 cut(s)	103, 343, 478
BstC8I	GCNNGC	2 cut(s)	144, 447
BstF5I	GGATG	1 cut(s)	367
BstFNI	CGCG	1 cut(s)	107
BstH2I	RGCGCY	1 cut(s)	460
BstHHI	GCGC	1 cut(s)	459
BstKTI	GATC	2 cut(s)	178, 571
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	2 cut(s)	175, 568
BstMCI	CGRYCG	2 cut(s)	195, 210
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 271
BstPAI	GACNNNNGTC	1 cut(s)	467
BstSCI	CCNGG	2 cut(s)	189, 418
BstUI	CGCG	1 cut(s)	107
BstV1I	GCAGC	2 cut(s)	538, 590
BstV2I	GAAGAC	1 cut(s)	143
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
BstZI	CGGCCG	1 cut(s)	207
BsuRI	GGCC	1 cut(s)	209
BtsCI	GGATG	1 cut(s)	367
BtsI	GCAGTG	1 cut(s)	566
BtsIMutI	CAGTG	1 cut(s)	566
Cac8I	GCNNGC	2 cut(s)	144, 447
CaiI	CAGNNNCTG	1 cut(s)	603
CciI	TCATGA	1 cut(s)	303
CfoI	GCGC	1 cut(s)	459
Cfr10I	RCCGGY	1 cut(s)	209
Cfr13I	GGNCC	2 cut(s)	260, 427
CpoI	CGGWCCG	1 cut(s)	260
CseI	GACGC	2 cut(s)	148, 235
CspI	CGGWCCG	1 cut(s)	260
CviAII	CATG	2 cut(s)	130, 304
CviJI	RGCY	8 cut(s)	51, 115, 169, 209, 309, 333, 445, 551
CviKI_1	RGCY	8 cut(s)	51, 115, 169, 209, 309, 333, 445, 551
DpnI	GATC	2 cut(s)	177, 570
DpnII	GATC	2 cut(s)	175, 568
EaeI	YGGCCR	1 cut(s)	207
EagI	CGGCCG	1 cut(s)	207
Ecl136II	GAGCTC	1 cut(s)	115
EclXI	CGGCCG	1 cut(s)	207
Eco24I	GRGCYC	1 cut(s)	117
Eco47I	GGWCC	2 cut(s)	260, 427
Eco47III	AGCGCT	1 cut(s)	458
Eco52I	CGGCCG	1 cut(s)	207
Eco53kI	GAGCTC	1 cut(s)	115
EcoICRI	GAGCTC	1 cut(s)	115
EcoO109I	RGGNCCY	1 cut(s)	427
EcoRI	GAATTC	1 cut(s)	581
EcoT38I	GRGCYC	1 cut(s)	117
Esp3I	CGTCTC	1 cut(s)	86
FaeI	CATG	2 cut(s)	133, 307
FatI	CATG	2 cut(s)	129, 303
FauI	CCCGC	1 cut(s)	100
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	3 cut(s)	135, 552, 604
FokI	GGATG	1 cut(s)	354
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	3 cut(s)	135, 552, 604
GlaI	GCGC	1 cut(s)	458
GluI	GCNGC	3 cut(s)	135, 552, 604
GsuI	CTGGAG	1 cut(s)	143
HaeII	RGCGCY	1 cut(s)	460
HaeIII	GGCC	1 cut(s)	209
HapII	CCGG	3 cut(s)	191, 210, 420
HgaI	GACGC	2 cut(s)	148, 235
HhaI	GCGC	1 cut(s)	459
Hin1II	CATG	2 cut(s)	133, 307
Hin6I	GCGC	1 cut(s)	457
HinP1I	GCGC	1 cut(s)	457
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	5 cut(s)	4, 126, 148, 201, 530
HpaII	CCGG	3 cut(s)	191, 210, 420
HphI	GGTGA	3 cut(s)	6, 404, 434
Hpy166II	GTNNAC	3 cut(s)	14, 196, 351
Hpy188I	TCNGA	5 cut(s)	260, 327, 339, 358, 573
Hpy188III	TCNNGA	5 cut(s)	160, 250, 304, 493, 586
Hpy8I	GTNNAC	3 cut(s)	14, 196, 351
Hpy99I	CGWCG	4 cut(s)	107, 142, 200, 343
HpyCH4III	ACNGT	3 cut(s)	103, 343, 478
HpyCH4V	TGCA	5 cut(s)	183, 399, 449, 539, 554
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 271
Hsp92II	CATG	2 cut(s)	133, 307
HspAI	GCGC	1 cut(s)	457
Kzo9I	GATC	2 cut(s)	175, 568
LmnI	GCTCC	2 cut(s)	120, 243
Lsp1109I	GCAGC	2 cut(s)	538, 590
LweI	GCATC	2 cut(s)	376, 615
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	2 cut(s)	177, 570
MboI	GATC	2 cut(s)	175, 568
MboII	GAAGA	2 cut(s)	143, 401
MflI	RGATCY	1 cut(s)	175
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	2 cut(s)	319, 581
MlyI	GAGTC	1 cut(s)	157
MmeI	TCCRAC	1 cut(s)	362
MnlI	CCTC	6 cut(s)	167, 274, 345, 418, 571, 603
MseI	TTAA	1 cut(s)	345
MslI	CAYNNNNRTG	2 cut(s)	42, 372
MspI	CCGG	3 cut(s)	191, 210, 420
MspR9I	CCNGG	2 cut(s)	191, 420
MvnI	CGCG	1 cut(s)	107
MwoI	GCNNNNNNNGC	2 cut(s)	143, 271
NciI	CCSGG	2 cut(s)	191, 420
NdeII	GATC	2 cut(s)	175, 568
NlaIII	CATG	2 cut(s)	133, 307
NlaIV	GGNNCC	1 cut(s)	429
NmeAIII	GCCGAG	1 cut(s)	185
NmuCI	GTSAC	1 cut(s)	247
OliI	CACNNNNGTG	1 cut(s)	42
PagI	TCATGA	1 cut(s)	303
PfeI	GAWTC	4 cut(s)	4, 126, 201, 530
PkrI	GCNGC	3 cut(s)	136, 553, 605
PleI	GAGTC	1 cut(s)	156
PpsI	GAGTC	1 cut(s)	156
PpuMI	RGGWCCY	1 cut(s)	427
PshAI	GACNNNNGTC	1 cut(s)	467
Psp124BI	GAGCTC	1 cut(s)	117
Psp5II	RGGWCCY	1 cut(s)	427
PspN4I	GGNNCC	1 cut(s)	429
PspPI	GGNCC	2 cut(s)	260, 427
PspPPI	RGGWCCY	1 cut(s)	427
PstNI	CAGNNNCTG	1 cut(s)	603
PsuI	RGATCY	1 cut(s)	175
RseI	CAYNNNNRTG	2 cut(s)	42, 372
Rsr2I	CGGWCCG	1 cut(s)	260
RsrII	CGGWCCG	1 cut(s)	260
SacI	GAGCTC	1 cut(s)	117
SalI	GTCGAC	1 cut(s)	194
SaqAI	TTAA	1 cut(s)	345
SatI	GCNGC	3 cut(s)	135, 552, 604
Sau3AI	GATC	2 cut(s)	175, 568
Sau96I	GGNCC	2 cut(s)	260, 427
SchI	GAGTC	1 cut(s)	157
ScrFI	CCNGG	2 cut(s)	191, 420
SduI	GDGCHC	1 cut(s)	117
SetI	ASST	7 cut(s)	117, 171, 311, 447, 469, 553, 597
SfaNI	GCATC	2 cut(s)	376, 615
SinI	GGWCC	2 cut(s)	260, 427
SmiMI	CAYNNNNRTG	2 cut(s)	42, 372
SmlI	CTYRAG	2 cut(s)	170, 493
SmoI	CTYRAG	2 cut(s)	170, 493
Sse9I	AATT	2 cut(s)	319, 581
SsiI	CCGC	4 cut(s)	107, 121, 134, 263
SstI	GAGCTC	1 cut(s)	117
StyD4I	CCNGG	2 cut(s)	189, 418
TaaI	ACNGT	3 cut(s)	103, 343, 478
TaqI	TCGA	2 cut(s)	195, 219
TasI	AATT	2 cut(s)	319, 581
TauI	GCSGC	1 cut(s)	137
TfiI	GAWTC	4 cut(s)	4, 126, 201, 530
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TscAI	CASTG	1 cut(s)	566
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	2 cut(s)	551, 603
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	4 cut(s)	17, 118, 237, 543
TspGWI	ACGGA	1 cut(s)	213
TspRI	CASTG	1 cut(s)	566
VpaK11BI	GGWCC	2 cut(s)	260, 427
XapI	RAATTY	1 cut(s)	581
XmiI	GTMKAC	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.