Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0007649

Physical Location & Seq

Genomic Coordinates Forward (+)

5484056 .. 5487386

Gene Structure 3331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G080700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCGGCGTCCCAGGCGAGCCTTCTGCTTCAGAAACAGCTCAAGGATCTTTGCAAGAACCCAGTAGACGGGTTCTCGGCCGGTCTGGTCGATGAAAACAATATCTTTGAGTGGAGCGTCACGATTATCGGACCGCCGGATACACTATATGAAGGGGGATTCTTCAATGCCATCATGAGCTTTCCTAATAATTATCCGAACAGCCCTCCGACGGTTAAGTTTACTTCAGATATATGGCATCCCAACGTCTATCCTGATGGCCGTGTTTGCATATCAATTCTTCATCCTCCTGGTGAGGATCCAAATGGTTATGAGCTTGCAAGTGAGCGCTGGACGCCTGTCCATACGGTTGAAAGCATAGTTTTGAGTATAATATCAATGCTATCCAGTCCGAATGACGAATCTCCTGCAAATGTTGAAGCTGCGGTAAGAGTGGAGAGATCGGAGAGACGATTTCAAGAAAAAGGTGAGCCGCTGTGTGAGAAAGTCACAAGAAATGCTATGAATGAATATGACGTGCTACCAAATGAAGCATTTTCTCCTCTCTGCACAAGTGTGTCGTCAGAGAGGATGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 ko05012 map04120 map04141 map05012

Pfam Domains

Protein Families

UQ_con

Protein Analysis

193

Amino Acids

21.31

Weight (kDa)

4.6

Isoelectric Point (pI)

50.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46460 AT3G46460 AT3G46460 AT5G59300
fragaria_vesca	FvH4_3g35650 FvH4_3g35650
malus_domestica	MD00G1137800.v1.1 MD02G1182900.v1.1 MD11G1144800.v1.1
prunus_persica	Prupe.6G080700_v2.0.a1 Prupe.6G080700_v2.0.a1 Prupe.6G080700_v2.0.a1 Prupe.6G080700_v2.0.a1
pyrus_communis	pycom03g07960 pycom11g09270
rosa_chinensis	RchiOBHm_Chr5g0063821
rosa_laevigata	RLG00000035675
rosa_roxburghii	Rroxscaffold_1G00017010
rosa_rugosa	Rorug05G0360000 Rorug05G0360000
rosa_samantha	Rh5BG434800 Rh5CG457900 Rh5DG447700
rosa_wichuraiana	Rw5G039340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	66
AciI	CCGC	4 cut(s)	5, 134, 425, 473
AclWI	GGATC	3 cut(s)	54, 293, 306
AcoI	YGGCCR	2 cut(s)	78, 259
AcuI	CTGAAG	2 cut(s)	14, 210
AcyI	GRCGYC	2 cut(s)	8, 335
AfeI	AGCGCT	1 cut(s)	329
AfiI	CCNNNNNNNGG	2 cut(s)	68, 211
AgsI	TTSAA	4 cut(s)	166, 353, 419, 458
AjiI	CACGTC	1 cut(s)	517
AjnI	CCWGG	2 cut(s)	12, 289
AleI	CACNNNNGTG	1 cut(s)	554
AluBI	AGCT	4 cut(s)	40, 180, 316, 422
AluI	AGCT	4 cut(s)	40, 180, 316, 422
Alw26I	GTCTC	1 cut(s)	442
AlwI	GGATC	3 cut(s)	54, 293, 306
Aor51HI	AGCGCT	1 cut(s)	329
AoxI	GGCC	2 cut(s)	78, 259
ApeKI	GCWGC	1 cut(s)	422
AspLEI	GCGC	1 cut(s)	330
AspS9I	GGNCC	1 cut(s)	131
AsuHPI	GGTGA	2 cut(s)	305, 479
AvaII	GGWCC	1 cut(s)	131
BamHI	GGATCC	1 cut(s)	298
BbvI	GCAGC	1 cut(s)	409
BccI	CCATC	2 cut(s)	179, 251
BceAI	ACGGC	1 cut(s)	246
BcgI	CGANNNNNNTGC	4 cut(s)	7, 41, 389, 423
BciT130I	CCWGG	2 cut(s)	14, 291
BciVI	GTATCC	1 cut(s)	133
BcoDI	GTCTC	1 cut(s)	442
BfoI	RGCGCY	1 cut(s)	331
BfuI	GTATCC	1 cut(s)	133
BisI	GCNGC	3 cut(s)	6, 423, 473
BlsI	GCNGC	3 cut(s)	7, 424, 474
Bme1390I	CCNGG	2 cut(s)	14, 291
Bme18I	GGWCC	1 cut(s)	131
BmgBI	CACGTC	1 cut(s)	517
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	1 cut(s)	300
BmrFI	CCNGG	2 cut(s)	14, 291
BmrI	ACTGGG	1 cut(s)	56
BmsI	GCATC	1 cut(s)	247
BmuI	ACTGGG	1 cut(s)	56
BoxI	GACNNNNGTC	1 cut(s)	338
BpuEI	CTTGAG	1 cut(s)	26
BsaHI	GRCGYC	2 cut(s)	8, 335
BsaJI	CCNNGG	1 cut(s)	12
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 211
Bse118I	RCCGGY	1 cut(s)	80
Bse1I	ACTGG	2 cut(s)	62, 387
BseBI	CCWGG	2 cut(s)	14, 291
BseDI	CCNNGG	1 cut(s)	12
BseGI	GGATG	3 cut(s)	238, 283, 576
BseLI	CCNNNNNNNGG	2 cut(s)	68, 211
BseNI	ACTGG	2 cut(s)	62, 387
BseRI	GAGGAG	1 cut(s)	531
BseX3I	CGGCCG	1 cut(s)	78
BseXI	GCAGC	1 cut(s)	409
BsgI	GTGCAG	1 cut(s)	532
Bsh1285I	CGRYCG	1 cut(s)	81
BshFI	GGCC	2 cut(s)	80, 261
BsiEI	CGRYCG	1 cut(s)	81
BsiSI	CCGG	2 cut(s)	81, 137
BslI	CCNNNNNNNGG	2 cut(s)	68, 211
BsmAI	GTCTC	1 cut(s)	442
BsmBI	CGTCTC	1 cut(s)	442
BsnI	GGCC	2 cut(s)	80, 261
Bsp143I	GATC	3 cut(s)	46, 298, 440
BspACI	CCGC	4 cut(s)	5, 134, 425, 473
BspANI	GGCC	2 cut(s)	80, 261
BspHI	TCATGA	1 cut(s)	174
BspLI	GGNNCC	1 cut(s)	300
BspPI	GGATC	3 cut(s)	54, 293, 306
BsrFI	RCCGGY	1 cut(s)	80
BsrI	ACTGG	2 cut(s)	62, 387
BssAI	RCCGGY	1 cut(s)	80
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	3 cut(s)	46, 298, 440
BssNI	GRCGYC	2 cut(s)	8, 335
Bst2UI	CCWGG	2 cut(s)	14, 291
Bst4CI	ACNGT	2 cut(s)	214, 349
BstACI	GRCGYC	2 cut(s)	8, 335
BstC8I	GCNNGC	2 cut(s)	19, 318
BstF5I	GGATG	3 cut(s)	238, 283, 576
BstH2I	RGCGCY	1 cut(s)	331
BstHHI	GCGC	1 cut(s)	330
BstKTI	GATC	3 cut(s)	49, 301, 443
BstMAI	GTCTC	1 cut(s)	442
BstMBI	GATC	3 cut(s)	46, 298, 440
BstMCI	CGRYCG	1 cut(s)	81
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 267, 334
BstNI	CCWGG	2 cut(s)	14, 291
BstPAI	GACNNNNGTC	1 cut(s)	338
BstSCI	CCNGG	2 cut(s)	12, 289
BstV1I	GCAGC	1 cut(s)	409
BstX2I	RGATCY	2 cut(s)	46, 298
BstYI	RGATCY	2 cut(s)	46, 298
BstZI	CGGCCG	1 cut(s)	78
BsuI	GTATCC	1 cut(s)	133
BsuRI	GGCC	2 cut(s)	80, 261
BtrI	CACGTC	1 cut(s)	517
BtsCI	GGATG	3 cut(s)	238, 283, 576
Cac8I	GCNNGC	2 cut(s)	19, 318
CciI	TCATGA	1 cut(s)	174
CfoI	GCGC	1 cut(s)	330
Cfr10I	RCCGGY	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	131
CpoI	CGGWCCG	1 cut(s)	131
CseI	GACGC	2 cut(s)	106, 343
CspI	CGGWCCG	1 cut(s)	131
CviAII	CATG	1 cut(s)	175
CviJI	RGCY	9 cut(s)	21, 40, 80, 180, 204, 261, 316, 422, 472
CviKI_1	RGCY	9 cut(s)	21, 40, 80, 180, 204, 261, 316, 422, 472
DpnI	GATC	3 cut(s)	48, 300, 442
DpnII	GATC	3 cut(s)	46, 298, 440
EaeI	YGGCCR	2 cut(s)	78, 259
EagI	CGGCCG	1 cut(s)	78
EclXI	CGGCCG	1 cut(s)	78
Eco47I	GGWCC	1 cut(s)	131
Eco47III	AGCGCT	1 cut(s)	329
Eco52I	CGGCCG	1 cut(s)	78
Eco57I	CTGAAG	2 cut(s)	14, 210
EcoRII	CCWGG	2 cut(s)	12, 289
Esp3I	CGTCTC	1 cut(s)	442
FaeI	CATG	1 cut(s)	178
FatI	CATG	1 cut(s)	174
FblI	GTMKAC	1 cut(s)	66
Fnu4HI	GCNGC	3 cut(s)	6, 423, 473
FokI	GGATG	2 cut(s)	225, 270
Fsp4HI	GCNGC	3 cut(s)	6, 423, 473
GlaI	GCGC	1 cut(s)	329
GluI	GCNGC	3 cut(s)	6, 423, 473
HaeII	RGCGCY	1 cut(s)	331
HaeIII	GGCC	2 cut(s)	80, 261
HapII	CCGG	2 cut(s)	81, 137
HgaI	GACGC	2 cut(s)	106, 343
HhaI	GCGC	1 cut(s)	330
Hin1I	GRCGYC	2 cut(s)	8, 335
Hin1II	CATG	1 cut(s)	178
Hin6I	GCGC	1 cut(s)	328
HinP1I	GCGC	1 cut(s)	328
HinfI	GANTC	2 cut(s)	159, 401
HpaII	CCGG	2 cut(s)	81, 137
HphI	GGTGA	2 cut(s)	305, 479
Hpy166II	GTNNAC	2 cut(s)	67, 222
Hpy188I	TCNGA	8 cut(s)	33, 131, 198, 210, 229, 393, 445, 565
Hpy188III	TCNNGA	4 cut(s)	121, 175, 254, 458
Hpy8I	GTNNAC	2 cut(s)	67, 222
Hpy99I	CGWCG	1 cut(s)	214
HpyAV	CCTTC	2 cut(s)	32, 146
HpyCH4III	ACNGT	2 cut(s)	214, 349
HpyCH4IV	ACGT	2 cut(s)	246, 516
HpyCH4V	TGCA	5 cut(s)	54, 270, 320, 410, 549
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 267, 334
HpySE526I	ACGT	2 cut(s)	246, 516
Hsp92I	GRCGYC	2 cut(s)	8, 335
Hsp92II	CATG	1 cut(s)	178
HspAI	GCGC	1 cut(s)	328
Kzo9I	GATC	3 cut(s)	46, 298, 440
LmnI	GCTCC	1 cut(s)	114
Lsp1109I	GCAGC	1 cut(s)	409
LweI	GCATC	1 cut(s)	247
MaeII	ACGT	2 cut(s)	246, 516
MaeIII	GTNAC	2 cut(s)	118, 487
MalI	GATC	3 cut(s)	48, 300, 442
MboI	GATC	3 cut(s)	46, 298, 440
MboII	GAAGA	2 cut(s)	154, 272
MflI	RGATCY	2 cut(s)	46, 298
MluCI	AATT	2 cut(s)	190, 276
MmeI	TCCRAC	1 cut(s)	233
MnlI	CCTC	5 cut(s)	216, 289, 297, 552, 561
MseI	TTAA	2 cut(s)	216, 577
MslI	CAYNNNNRTG	1 cut(s)	554
MspA1I	CMGCKG	1 cut(s)	475
MspI	CCGG	2 cut(s)	81, 137
MspR9I	CCNGG	2 cut(s)	14, 291
MvaI	CCWGG	2 cut(s)	14, 291
MwoI	GCNNNNNNNGC	3 cut(s)	14, 267, 334
NdeII	GATC	3 cut(s)	46, 298, 440
NlaIII	CATG	1 cut(s)	178
NlaIV	GGNNCC	1 cut(s)	300
NmeAIII	GCCGAG	1 cut(s)	56
NmuCI	GTSAC	2 cut(s)	118, 487
OliI	CACNNNNGTG	1 cut(s)	554
PagI	TCATGA	1 cut(s)	174
PfeI	GAWTC	2 cut(s)	159, 401
PkrI	GCNGC	3 cut(s)	7, 424, 474
PshAI	GACNNNNGTC	1 cut(s)	338
Psp6I	CCWGG	2 cut(s)	12, 289
PspGI	CCWGG	2 cut(s)	12, 289
PspN4I	GGNNCC	1 cut(s)	300
PspPI	GGNCC	1 cut(s)	131
PsuI	RGATCY	2 cut(s)	46, 298
RseI	CAYNNNNRTG	1 cut(s)	554
Rsr2I	CGGWCCG	1 cut(s)	131
RsrII	CGGWCCG	1 cut(s)	131
SaqAI	TTAA	2 cut(s)	216, 577
SatI	GCNGC	3 cut(s)	6, 423, 473
Sau3AI	GATC	3 cut(s)	46, 298, 440
Sau96I	GGNCC	1 cut(s)	131
ScrFI	CCNGG	2 cut(s)	14, 291
SetI	ASST	7 cut(s)	42, 182, 249, 318, 424, 469, 519
SfaNI	GCATC	1 cut(s)	247
SinI	GGWCC	1 cut(s)	131
SmiMI	CAYNNNNRTG	1 cut(s)	554
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
Sse9I	AATT	2 cut(s)	190, 276
SsiI	CCGC	4 cut(s)	5, 134, 425, 473
StyD4I	CCNGG	2 cut(s)	12, 289
TaaI	ACNGT	2 cut(s)	214, 349
TaiI	ACGT	2 cut(s)	249, 519
TaqI	TCGA	1 cut(s)	90
TasI	AATT	2 cut(s)	190, 276
TauI	GCSGC	2 cut(s)	8, 475
TfiI	GAWTC	2 cut(s)	159, 401
Tru1I	TTAA	2 cut(s)	216, 577
Tru9I	TTAA	2 cut(s)	216, 577
TseFI	GTSAC	2 cut(s)	118, 487
TseI	GCWGC	1 cut(s)	422
Tsp45I	GTSAC	2 cut(s)	118, 487
TspDTI	ATGAA	6 cut(s)	108, 165, 272, 518, 522, 543
VpaK11BI	GGWCC	1 cut(s)	131
XmiI	GTMKAC	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.