Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0007649

Physical Location & Seq

Genomic Coordinates Reverse (-)

16513101 .. 16515799

Gene Structure 2699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1182900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGCGGCGACGCAGGCGAGTCTTCTCCTCCAGAAACAGCTCAAGGATCTTTGCAAGAACCCGGTCGATGGATTCTCGGCCGGTCTGGTCGATGAAAACAATATCTTTGAGTGGAGCGTCACGATTATCGGACCGCCTGATACGCTCTATGAGGGGGGGTTTTTCAATGCCATCATGAGCTTTCCAAATAATTATCCGAACAGCCCTCCGACGGTTAAGTTTACTTCAGAGATATGGCATCCAAATGTTTATACTGATGGGCGTGTTTGCATATCTATTCTTCACCCCCCTGGTGAGGACCCAAATGGTTATGAGCTTGCAAGTGAGCGCTGGACGCCTGTCCATACGTGGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 ko05012 map04120 map04141 map05012

Pfam Domains

Protein Families

UQ_con

Protein Analysis

119

Amino Acids

13.2

Weight (kDa)

4.61

Isoelectric Point (pI)

36.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	10 - 116	1.4e-35	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46460 AT3G46460 AT3G46460 AT5G59300
fragaria_vesca	FvH4_3g35650 FvH4_3g35650
malus_domestica	MD00G1137800.v1.1 MD02G1182900.v1.1 MD11G1144800.v1.1
prunus_persica	Prupe.6G080700_v2.0.a1 Prupe.6G080700_v2.0.a1 Prupe.6G080700_v2.0.a1 Prupe.6G080700_v2.0.a1
pyrus_communis	pycom03g07960 pycom11g09270
rosa_chinensis	RchiOBHm_Chr5g0063821
rosa_laevigata	RLG00000035675
rosa_roxburghii	Rroxscaffold_1G00017010
rosa_rugosa	Rorug05G0360000 Rorug05G0360000
rosa_samantha	Rh5BG434800 Rh5CG457900 Rh5DG447700
rosa_wichuraiana	Rw5G039340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 134
AclWI	GGATC	1 cut(s)	54
AcoI	YGGCCR	1 cut(s)	78
AcuI	CTGAAG	1 cut(s)	210
AcyI	GRCGYC	1 cut(s)	335
AfeI	AGCGCT	1 cut(s)	329
AfiI	CCNNNNNNNGG	4 cut(s)	68, 211, 295, 349
AgsI	TTSAA	1 cut(s)	166
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	3 cut(s)	40, 180, 316
AluI	AGCT	3 cut(s)	40, 180, 316
AlwI	GGATC	1 cut(s)	54
Aor51HI	AGCGCT	1 cut(s)	329
AoxI	GGCC	1 cut(s)	78
AspLEI	GCGC	1 cut(s)	330
AspS9I	GGNCC	2 cut(s)	131, 298
AsuC2I	CCSGG	1 cut(s)	62
AsuHPI	GGTGA	2 cut(s)	275, 305
AvaII	GGWCC	2 cut(s)	131, 298
BbsI	GAAGAC	1 cut(s)	14
BccI	CCATC	3 cut(s)	62, 179, 251
BciT130I	CCWGG	1 cut(s)	291
BcnI	CCSGG	1 cut(s)	62
BfoI	RGCGCY	1 cut(s)	331
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	2 cut(s)	62, 291
Bme18I	GGWCC	2 cut(s)	131, 298
BmgT120I	GGNCC	2 cut(s)	131, 298
BmiI	GGNNCC	1 cut(s)	300
BmrFI	CCNGG	2 cut(s)	62, 291
BmsI	GCATC	1 cut(s)	247
BoxI	GACNNNNGTC	1 cut(s)	338
BpiI	GAAGAC	1 cut(s)	14
BpmI	CTGGAG	1 cut(s)	14
BpuEI	CTTGAG	1 cut(s)	26
BpuMI	CCSGG	1 cut(s)	62
BsaAI	YACGTR	1 cut(s)	348
BsaHI	GRCGYC	1 cut(s)	335
BsaJI	CCNNGG	1 cut(s)	289
Bsc4I	CCNNNNNNNGG	4 cut(s)	68, 211, 295, 349
Bse118I	RCCGGY	1 cut(s)	80
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	1 cut(s)	289
BseGI	GGATG	1 cut(s)	238
BseLI	CCNNNNNNNGG	4 cut(s)	68, 211, 295, 349
BseRI	GAGGAG	1 cut(s)	17
BseX3I	CGGCCG	1 cut(s)	78
Bsh1285I	CGRYCG	2 cut(s)	66, 81
BshFI	GGCC	1 cut(s)	80
BsiEI	CGRYCG	2 cut(s)	66, 81
BsiSI	CCGG	2 cut(s)	62, 81
BslI	CCNNNNNNNGG	4 cut(s)	68, 211, 295, 349
BsnI	GGCC	1 cut(s)	80
Bsp143I	GATC	1 cut(s)	46
BspACI	CCGC	2 cut(s)	5, 134
BspANI	GGCC	1 cut(s)	80
BspHI	TCATGA	1 cut(s)	174
BspLI	GGNNCC	1 cut(s)	300
BspPI	GGATC	1 cut(s)	54
BsrFI	RCCGGY	1 cut(s)	80
BssAI	RCCGGY	1 cut(s)	80
BssECI	CCNNGG	1 cut(s)	289
BssMI	GATC	1 cut(s)	46
BssNI	GRCGYC	1 cut(s)	335
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	1 cut(s)	214
BstACI	GRCGYC	1 cut(s)	335
BstBAI	YACGTR	1 cut(s)	348
BstC8I	GCNNGC	2 cut(s)	15, 318
BstF5I	GGATG	1 cut(s)	238
BstH2I	RGCGCY	1 cut(s)	331
BstHHI	GCGC	1 cut(s)	330
BstKTI	GATC	1 cut(s)	49
BstMBI	GATC	1 cut(s)	46
BstMCI	CGRYCG	2 cut(s)	66, 81
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 142, 334
BstNI	CCWGG	1 cut(s)	291
BstPAI	GACNNNNGTC	1 cut(s)	338
BstSCI	CCNGG	2 cut(s)	60, 289
BstV2I	GAAGAC	1 cut(s)	14
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
BstZI	CGGCCG	1 cut(s)	78
BsuRI	GGCC	1 cut(s)	80
BtsCI	GGATG	1 cut(s)	238
Cac8I	GCNNGC	2 cut(s)	15, 318
CciI	TCATGA	1 cut(s)	174
CfoI	GCGC	1 cut(s)	330
Cfr10I	RCCGGY	1 cut(s)	80
Cfr13I	GGNCC	2 cut(s)	131, 298
CpoI	CGGWCCG	1 cut(s)	131
CseI	GACGC	3 cut(s)	19, 106, 343
CspI	CGGWCCG	1 cut(s)	131
CviAII	CATG	1 cut(s)	175
CviJI	RGCY	5 cut(s)	40, 80, 180, 204, 316
CviKI_1	RGCY	5 cut(s)	40, 80, 180, 204, 316
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
EaeI	YGGCCR	1 cut(s)	78
EagI	CGGCCG	1 cut(s)	78
EclXI	CGGCCG	1 cut(s)	78
Eco47I	GGWCC	2 cut(s)	131, 298
Eco47III	AGCGCT	1 cut(s)	329
Eco52I	CGGCCG	1 cut(s)	78
Eco57I	CTGAAG	1 cut(s)	210
EcoO109I	RGGNCCY	1 cut(s)	298
EcoRII	CCWGG	1 cut(s)	289
FaeI	CATG	1 cut(s)	178
FaiI	YATR	7 cut(s)	150, 176, 235, 252, 272, 312, 345
FatI	CATG	1 cut(s)	174
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	225
Fsp4HI	GCNGC	1 cut(s)	6
GlaI	GCGC	1 cut(s)	329
GluI	GCNGC	1 cut(s)	6
GsuI	CTGGAG	1 cut(s)	14
HaeII	RGCGCY	1 cut(s)	331
HaeIII	GGCC	1 cut(s)	80
HapII	CCGG	2 cut(s)	62, 81
HgaI	GACGC	3 cut(s)	19, 106, 343
HhaI	GCGC	1 cut(s)	330
Hin1I	GRCGYC	1 cut(s)	335
Hin1II	CATG	1 cut(s)	178
Hin6I	GCGC	1 cut(s)	328
HinP1I	GCGC	1 cut(s)	328
HinfI	GANTC	2 cut(s)	19, 72
HpaII	CCGG	2 cut(s)	62, 81
HphI	GGTGA	2 cut(s)	275, 305
Hpy166II	GTNNAC	1 cut(s)	222
Hpy188I	TCNGA	4 cut(s)	131, 198, 210, 229
Hpy188III	TCNNGA	3 cut(s)	31, 121, 175
Hpy8I	GTNNAC	1 cut(s)	222
Hpy99I	CGWCG	2 cut(s)	13, 214
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4IV	ACGT	1 cut(s)	347
HpyCH4V	TGCA	3 cut(s)	54, 270, 320
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 142, 334
HpySE526I	ACGT	1 cut(s)	347
Hsp92I	GRCGYC	1 cut(s)	335
Hsp92II	CATG	1 cut(s)	178
HspAI	GCGC	1 cut(s)	328
Kzo9I	GATC	1 cut(s)	46
LmnI	GCTCC	1 cut(s)	114
LpnPI	CCDG	9 cut(s)	44, 71, 75, 94, 150, 276, 303, 316, 351
LweI	GCATC	1 cut(s)	247
MaeII	ACGT	1 cut(s)	347
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	1 cut(s)	48
MboI	GATC	1 cut(s)	46
MboII	GAAGA	2 cut(s)	14, 272
MflI	RGATCY	1 cut(s)	46
MluCI	AATT	1 cut(s)	190
MlyI	GAGTC	1 cut(s)	28
MmeI	TCCRAC	1 cut(s)	233
MnlI	CCTC	4 cut(s)	38, 145, 216, 289
MseI	TTAA	1 cut(s)	216
MslI	CAYNNNNRTG	1 cut(s)	243
MspI	CCGG	2 cut(s)	62, 81
MspR9I	CCNGG	2 cut(s)	62, 291
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	3 cut(s)	14, 142, 334
NciI	CCSGG	1 cut(s)	62
NdeII	GATC	1 cut(s)	46
NlaIII	CATG	1 cut(s)	178
NlaIV	GGNNCC	1 cut(s)	300
NmeAIII	GCCGAG	1 cut(s)	56
NmuCI	GTSAC	1 cut(s)	118
PagI	TCATGA	1 cut(s)	174
PfeI	GAWTC	1 cut(s)	72
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
Ppu21I	YACGTR	1 cut(s)	348
PpuMI	RGGWCCY	1 cut(s)	298
PshAI	GACNNNNGTC	1 cut(s)	338
Psp5II	RGGWCCY	1 cut(s)	298
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	1 cut(s)	300
PspPI	GGNCC	2 cut(s)	131, 298
PspPPI	RGGWCCY	1 cut(s)	298
PsuI	RGATCY	1 cut(s)	46
RseI	CAYNNNNRTG	1 cut(s)	243
Rsr2I	CGGWCCG	1 cut(s)	131
RsrII	CGGWCCG	1 cut(s)	131
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	46
Sau96I	GGNCC	2 cut(s)	131, 298
SchI	GAGTC	1 cut(s)	28
ScrFI	CCNGG	2 cut(s)	62, 291
SetI	ASST	4 cut(s)	42, 182, 318, 350
SfaNI	GCATC	1 cut(s)	247
SinI	GGWCC	2 cut(s)	131, 298
SmiMI	CAYNNNNRTG	1 cut(s)	243
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
Sse9I	AATT	1 cut(s)	190
SsiI	CCGC	2 cut(s)	5, 134
StyD4I	CCNGG	2 cut(s)	60, 289
TaaI	ACNGT	1 cut(s)	214
TaiI	ACGT	1 cut(s)	350
TaqI	TCGA	2 cut(s)	66, 90
TasI	AATT	1 cut(s)	190
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	72
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TseFI	GTSAC	1 cut(s)	118
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	1 cut(s)	108
VpaK11BI	GGWCC	2 cut(s)	131, 298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.