Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0007649

Physical Location & Seq

Genomic Coordinates Forward (+)

13448925 .. 13453187

Gene Structure 4263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1144800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGCGGCTTCCCAGGCGAGTCTTCTCCTCCAGAAACAACTCAAGGATCTTTGCAAGAACCCGGTCGATGGATTCTCGGCCGGTCTGGTCGATGAAAACAATATCTTTGAGTGGAGCGTCACGATTATCGGACCGCCTGATACTCTCTACGAGGGAGGATTTTTCAATGCCATCATGAGCTTTCCTAATAATTATCCAAACAGCCCTCCGACGGTTAAGTTTACTTCGGAGATATGGCATCCAAATGTTTATACTGATGGGCGTGTTTGCATATCTATCCTTCACCCGCCTGGTGAGGACCCAAATGGTTACGAGCTTGCAAGTGAACGCTGGACGCCTGTCCATACGGTTGAAAGTATAGTCTTGAGTATAATATCGATGCTATCCAGTCCAAATGACGAATCTCCTGCAAATGTTGAAGCTGCTAAGGAGTGGAGAGACCGGAGAGAGGATTTCAAGAAAAAGGTCAGCCGCTGCGTGAGGAAATCACAAGAGATGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 ko05012 map04120 map04141 map05012

Pfam Domains

Protein Families

UQ_con

Protein Analysis

168

Amino Acids

18.74

Weight (kDa)

5.07

Isoelectric Point (pI)

45.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	10 - 159	3e-52	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46460 AT3G46460 AT3G46460 AT5G59300
fragaria_vesca	FvH4_3g35650 FvH4_3g35650
malus_domestica	MD00G1137800.v1.1 MD02G1182900.v1.1 MD11G1144800.v1.1
prunus_persica	Prupe.6G080700_v2.0.a1 Prupe.6G080700_v2.0.a1 Prupe.6G080700_v2.0.a1 Prupe.6G080700_v2.0.a1
pyrus_communis	pycom03g07960 pycom11g09270
rosa_chinensis	RchiOBHm_Chr5g0063821
rosa_laevigata	RLG00000035675
rosa_roxburghii	Rroxscaffold_1G00017010
rosa_rugosa	Rorug05G0360000 Rorug05G0360000
rosa_samantha	Rh5BG434800 Rh5CG457900 Rh5DG447700
rosa_wichuraiana	Rw5G039340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	5, 134, 287, 472
AclWI	GGATC	1 cut(s)	54
AcoI	YGGCCR	1 cut(s)	78
AcyI	GRCGYC	1 cut(s)	335
AfiI	CCNNNNNNNGG	3 cut(s)	68, 211, 448
AgsI	TTSAA	4 cut(s)	166, 353, 419, 457
AjnI	CCWGG	2 cut(s)	12, 289
AluBI	AGCT	3 cut(s)	180, 316, 422
AluI	AGCT	3 cut(s)	180, 316, 422
Alw26I	GTCTC	1 cut(s)	432
AlwI	GGATC	1 cut(s)	54
AlwNI	CAGNNNCTG	1 cut(s)	474
AoxI	GGCC	1 cut(s)	78
ApeKI	GCWGC	2 cut(s)	422, 474
AspS9I	GGNCC	2 cut(s)	131, 298
AsuC2I	CCSGG	1 cut(s)	62
AsuHPI	GGTGA	2 cut(s)	275, 305
AvaII	GGWCC	2 cut(s)	131, 298
BbsI	GAAGAC	1 cut(s)	14
BbvI	GCAGC	2 cut(s)	409, 461
BccI	CCATC	3 cut(s)	62, 179, 251
BcgI	CGANNNNNNTGC	2 cut(s)	389, 423
BciT130I	CCWGG	2 cut(s)	14, 291
BcnI	CCSGG	1 cut(s)	62
BcoDI	GTCTC	1 cut(s)	432
BisI	GCNGC	4 cut(s)	6, 423, 472, 475
BlsI	GCNGC	4 cut(s)	7, 424, 473, 476
Bme1390I	CCNGG	3 cut(s)	14, 62, 291
Bme18I	GGWCC	2 cut(s)	131, 298
BmgT120I	GGNCC	2 cut(s)	131, 298
BmiI	GGNNCC	1 cut(s)	300
BmrFI	CCNGG	3 cut(s)	14, 62, 291
BmsI	GCATC	3 cut(s)	247, 369, 486
BoxI	GACNNNNGTC	1 cut(s)	338
BpiI	GAAGAC	1 cut(s)	14
BpmI	CTGGAG	1 cut(s)	14
Bpu10I	CCTNAGC	1 cut(s)	426
BpuEI	CTTGAG	2 cut(s)	26, 385
BpuMI	CCSGG	1 cut(s)	62
Bsa29I	ATCGAT	1 cut(s)	377
BsaHI	GRCGYC	1 cut(s)	335
BsaI	GGTCTC	1 cut(s)	432
BsaJI	CCNNGG	1 cut(s)	12
BsaWI	WCCGGW	1 cut(s)	441
Bsc4I	CCNNNNNNNGG	3 cut(s)	68, 211, 448
Bse118I	RCCGGY	1 cut(s)	80
Bse1I	ACTGG	1 cut(s)	387
BseBI	CCWGG	2 cut(s)	14, 291
BseCI	ATCGAT	1 cut(s)	377
BseDI	CCNNGG	1 cut(s)	12
BseGI	GGATG	1 cut(s)	238
BseLI	CCNNNNNNNGG	3 cut(s)	68, 211, 448
BseNI	ACTGG	1 cut(s)	387
BseRI	GAGGAG	1 cut(s)	17
BseX3I	CGGCCG	1 cut(s)	78
BseXI	GCAGC	2 cut(s)	409, 461
Bsh1285I	CGRYCG	2 cut(s)	66, 81
BshFI	GGCC	1 cut(s)	80
BshVI	ATCGAT	1 cut(s)	377
BsiEI	CGRYCG	2 cut(s)	66, 81
BsiSI	CCGG	3 cut(s)	62, 81, 442
BslI	CCNNNNNNNGG	3 cut(s)	68, 211, 448
BsmAI	GTCTC	1 cut(s)	432
BsnI	GGCC	1 cut(s)	80
Bso31I	GGTCTC	1 cut(s)	432
Bsp143I	GATC	1 cut(s)	46
BspACI	CCGC	4 cut(s)	5, 134, 287, 472
BspANI	GGCC	1 cut(s)	80
BspDI	ATCGAT	1 cut(s)	377
BspHI	TCATGA	1 cut(s)	174
BspLI	GGNNCC	1 cut(s)	300
BspPI	GGATC	1 cut(s)	54
BspTNI	GGTCTC	1 cut(s)	432
BsrFI	RCCGGY	1 cut(s)	80
BsrI	ACTGG	1 cut(s)	387
BssAI	RCCGGY	1 cut(s)	80
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	1 cut(s)	46
BssNI	GRCGYC	1 cut(s)	335
Bst2UI	CCWGG	2 cut(s)	14, 291
Bst4CI	ACNGT	2 cut(s)	214, 349
BstACI	GRCGYC	1 cut(s)	335
BstC8I	GCNNGC	1 cut(s)	318
BstDEI	CTNAG	1 cut(s)	426
BstF5I	GGATG	1 cut(s)	238
BstKTI	GATC	1 cut(s)	49
BstMAI	GTCTC	1 cut(s)	432
BstMBI	GATC	1 cut(s)	46
BstMCI	CGRYCG	2 cut(s)	66, 81
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstNI	CCWGG	2 cut(s)	14, 291
BstPAI	GACNNNNGTC	1 cut(s)	338
BstSCI	CCNGG	3 cut(s)	12, 60, 289
BstV1I	GCAGC	2 cut(s)	409, 461
BstV2I	GAAGAC	1 cut(s)	14
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
BstZI	CGGCCG	1 cut(s)	78
Bsu15I	ATCGAT	1 cut(s)	377
BsuRI	GGCC	1 cut(s)	80
BsuTUI	ATCGAT	1 cut(s)	377
BtsCI	GGATG	1 cut(s)	238
Cac8I	GCNNGC	1 cut(s)	318
CaiI	CAGNNNCTG	1 cut(s)	474
CciI	TCATGA	1 cut(s)	174
Cfr10I	RCCGGY	1 cut(s)	80
Cfr13I	GGNCC	2 cut(s)	131, 298
ClaI	ATCGAT	1 cut(s)	377
CpoI	CGGWCCG	1 cut(s)	131
CseI	GACGC	2 cut(s)	106, 343
CspI	CGGWCCG	1 cut(s)	131
CviAII	CATG	1 cut(s)	175
CviJI	RGCY	7 cut(s)	8, 80, 180, 204, 316, 422, 471
CviKI_1	RGCY	7 cut(s)	8, 80, 180, 204, 316, 422, 471
DdeI	CTNAG	1 cut(s)	426
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
EaeI	YGGCCR	1 cut(s)	78
EagI	CGGCCG	1 cut(s)	78
EclXI	CGGCCG	1 cut(s)	78
Eco31I	GGTCTC	1 cut(s)	432
Eco47I	GGWCC	2 cut(s)	131, 298
Eco52I	CGGCCG	1 cut(s)	78
EcoO109I	RGGNCCY	1 cut(s)	298
EcoRII	CCWGG	2 cut(s)	12, 289
FaeI	CATG	1 cut(s)	178
FaiI	YATR	8 cut(s)	176, 235, 252, 272, 345, 359, 371, 502
FatI	CATG	1 cut(s)	174
FauI	CCCGC	1 cut(s)	294
Fnu4HI	GCNGC	4 cut(s)	6, 423, 472, 475
FokI	GGATG	1 cut(s)	225
Fsp4HI	GCNGC	4 cut(s)	6, 423, 472, 475
GluI	GCNGC	4 cut(s)	6, 423, 472, 475
GsuI	CTGGAG	1 cut(s)	14
HaeIII	GGCC	1 cut(s)	80
HapII	CCGG	3 cut(s)	62, 81, 442
HgaI	GACGC	2 cut(s)	106, 343
Hin1I	GRCGYC	1 cut(s)	335
Hin1II	CATG	1 cut(s)	178
HinfI	GANTC	3 cut(s)	19, 72, 401
HpaII	CCGG	3 cut(s)	62, 81, 442
HphI	GGTGA	2 cut(s)	275, 305
Hpy166II	GTNNAC	2 cut(s)	222, 326
Hpy188I	TCNGA	3 cut(s)	131, 210, 229
Hpy188III	TCNNGA	5 cut(s)	31, 121, 175, 364, 457
Hpy8I	GTNNAC	2 cut(s)	222, 326
Hpy99I	CGWCG	1 cut(s)	214
HpyAV	CCTTC	1 cut(s)	290
HpyCH4III	ACNGT	2 cut(s)	214, 349
HpyCH4V	TGCA	4 cut(s)	54, 270, 320, 410
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	1 cut(s)	426
Hsp92I	GRCGYC	1 cut(s)	335
Hsp92II	CATG	1 cut(s)	178
Kzo9I	GATC	1 cut(s)	46
LmnI	GCTCC	1 cut(s)	114
Lsp1109I	GCAGC	2 cut(s)	409, 461
LweI	GCATC	3 cut(s)	247, 369, 486
MaeIII	GTNAC	2 cut(s)	118, 308
MalI	GATC	1 cut(s)	48
MboI	GATC	1 cut(s)	46
MboII	GAAGA	1 cut(s)	14
MflI	RGATCY	1 cut(s)	46
MluCI	AATT	1 cut(s)	190
MlyI	GAGTC	1 cut(s)	28
MmeI	TCCRAC	1 cut(s)	233
MnlI	CCTC	7 cut(s)	38, 145, 149, 216, 289, 442, 474
MseI	TTAA	1 cut(s)	216
MslI	CAYNNNNRTG	1 cut(s)	243
MspA1I	CMGCKG	1 cut(s)	474
MspI	CCGG	3 cut(s)	62, 81, 442
MspR9I	CCNGG	3 cut(s)	14, 62, 291
MvaI	CCWGG	2 cut(s)	14, 291
MwoI	GCNNNNNNNGC	1 cut(s)	14
NciI	CCSGG	1 cut(s)	62
NdeII	GATC	1 cut(s)	46
NlaIII	CATG	1 cut(s)	178
NlaIV	GGNNCC	1 cut(s)	300
NmeAIII	GCCGAG	1 cut(s)	56
NmuCI	GTSAC	1 cut(s)	118
PagI	TCATGA	1 cut(s)	174
PfeI	GAWTC	2 cut(s)	72, 401
PkrI	GCNGC	4 cut(s)	7, 424, 473, 476
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
PpuMI	RGGWCCY	1 cut(s)	298
PshAI	GACNNNNGTC	1 cut(s)	338
Psp5II	RGGWCCY	1 cut(s)	298
Psp6I	CCWGG	2 cut(s)	12, 289
PspGI	CCWGG	2 cut(s)	12, 289
PspN4I	GGNNCC	1 cut(s)	300
PspPI	GGNCC	2 cut(s)	131, 298
PspPPI	RGGWCCY	1 cut(s)	298
PstNI	CAGNNNCTG	1 cut(s)	474
PsuI	RGATCY	1 cut(s)	46
RseI	CAYNNNNRTG	1 cut(s)	243
Rsr2I	CGGWCCG	1 cut(s)	131
RsrII	CGGWCCG	1 cut(s)	131
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	4 cut(s)	6, 423, 472, 475
Sau3AI	GATC	1 cut(s)	46
Sau96I	GGNCC	2 cut(s)	131, 298
SchI	GAGTC	1 cut(s)	28
ScrFI	CCNGG	3 cut(s)	14, 62, 291
SetI	ASST	4 cut(s)	182, 318, 424, 468
SfaNI	GCATC	3 cut(s)	247, 369, 486
SinI	GGWCC	2 cut(s)	131, 298
SmiMI	CAYNNNNRTG	1 cut(s)	243
SmlI	CTYRAG	2 cut(s)	41, 364
SmoI	CTYRAG	2 cut(s)	41, 364
Sse9I	AATT	1 cut(s)	190
SsiI	CCGC	4 cut(s)	5, 134, 287, 472
StyD4I	CCNGG	3 cut(s)	12, 60, 289
TaaI	ACNGT	2 cut(s)	214, 349
TaqI	TCGA	3 cut(s)	66, 90, 377
TasI	AATT	1 cut(s)	190
TauI	GCSGC	2 cut(s)	8, 474
TfiI	GAWTC	2 cut(s)	72, 401
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	2 cut(s)	422, 474
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	1 cut(s)	108
VpaK11BI	GGWCC	2 cut(s)	131, 298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.