Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0007649

Physical Location & Seq

Genomic Coordinates Forward (+)

7441107 .. 7444937

Gene Structure 3831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g09270.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGACTCGCCGGCCACCGACTCCATCACAAGATACGCATCTTTGCAAGAACCCGGTTGATGGATTCTCGGCCGGTCTGGTCGATGAAAACAATATCTTTGAGTGGAGCGTCACGATTATCGGACCGCCTGATACGCTCTACGAGGGAGGATTTTTCAATGCCATCATGAGCTTTCCTAATAATTATCCAAACAGCCCTCCGACGGTTAAGTTTACTTCGGAGATATGGCATCCGAATGTTTATACTGACGGGCGTGTTTGCATATCTATCCTTCACCCGCCTGGTGAGGACCCAAATGGTTACGAGCTTGCAAGTGAACGCTGGACGCCTGTCCATACGGTTGAAAGCATAGTCTTGAGTATAATATCGATGCTATCCAGTCCAAATGACGAATCTCCTGCAAATGTTGAAGCCGCTAAGGAGTGGAGAGACCGGAGAGAGGATTTCAAGAAAAAGGTCAGCCGCTGTGTGAGGAAATCACAAGAGATGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 ko05012 map04120 map04141 map05012

Pfam Domains

Protein Families

UQ_con

Protein Analysis

165

Amino Acids

18.52

Weight (kDa)

5.2

Isoelectric Point (pI)

49.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46460 AT3G46460 AT3G46460 AT5G59300
fragaria_vesca	FvH4_3g35650 FvH4_3g35650
malus_domestica	MD00G1137800.v1.1 MD02G1182900.v1.1 MD11G1144800.v1.1
prunus_persica	Prupe.6G080700_v2.0.a1 Prupe.6G080700_v2.0.a1 Prupe.6G080700_v2.0.a1 Prupe.6G080700_v2.0.a1
pyrus_communis	pycom03g07960 pycom11g09270
rosa_chinensis	RchiOBHm_Chr5g0063821
rosa_laevigata	RLG00000035675
rosa_roxburghii	Rroxscaffold_1G00017010
rosa_rugosa	Rorug05G0360000 Rorug05G0360000
rosa_samantha	Rh5BG434800 Rh5CG457900 Rh5DG447700
rosa_wichuraiana	Rw5G039340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	125, 278, 414, 463
AcoI	YGGCCR	2 cut(s)	11, 69
AcyI	GRCGYC	1 cut(s)	326
AfiI	CCNNNNNNNGG	3 cut(s)	59, 202, 439
AgsI	TTSAA	4 cut(s)	157, 344, 410, 448
AjnI	CCWGG	1 cut(s)	280
AluBI	AGCT	2 cut(s)	171, 307
AluI	AGCT	2 cut(s)	171, 307
Alw26I	GTCTC	1 cut(s)	423
AlwNI	CAGNNNCTG	1 cut(s)	465
AoxI	GGCC	2 cut(s)	11, 69
AspS9I	GGNCC	2 cut(s)	122, 289
AsuC2I	CCSGG	1 cut(s)	53
AsuHPI	GGTGA	2 cut(s)	266, 296
AvaII	GGWCC	2 cut(s)	122, 289
BccI	CCATC	3 cut(s)	31, 53, 170
BcgI	CGANNNNNNTGC	2 cut(s)	380, 414
BciT130I	CCWGG	1 cut(s)	282
BcnI	CCSGG	1 cut(s)	53
BcoDI	GTCTC	1 cut(s)	423
BisI	GCNGC	2 cut(s)	414, 463
BlsI	GCNGC	2 cut(s)	415, 464
Bme1390I	CCNGG	2 cut(s)	53, 282
Bme18I	GGWCC	2 cut(s)	122, 289
BmgT120I	GGNCC	2 cut(s)	122, 289
BmiI	GGNNCC	1 cut(s)	291
BmrFI	CCNGG	2 cut(s)	53, 282
BmsI	GCATC	4 cut(s)	46, 238, 360, 477
BoxI	GACNNNNGTC	1 cut(s)	329
Bpu10I	CCTNAGC	1 cut(s)	417
BpuEI	CTTGAG	1 cut(s)	376
BpuMI	CCSGG	1 cut(s)	53
Bsa29I	ATCGAT	1 cut(s)	368
BsaBI	GATNNNNATC	1 cut(s)	36
BsaHI	GRCGYC	1 cut(s)	326
BsaI	GGTCTC	1 cut(s)	423
BsaWI	WCCGGW	1 cut(s)	432
Bsc4I	CCNNNNNNNGG	3 cut(s)	59, 202, 439
Bse118I	RCCGGY	2 cut(s)	9, 71
Bse1I	ACTGG	1 cut(s)	378
Bse8I	GATNNNNATC	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	282
BseCI	ATCGAT	1 cut(s)	368
BseGI	GGATG	1 cut(s)	229
BseJI	GATNNNNATC	1 cut(s)	36
BseLI	CCNNNNNNNGG	3 cut(s)	59, 202, 439
BseNI	ACTGG	1 cut(s)	378
BseX3I	CGGCCG	1 cut(s)	69
Bsh1285I	CGRYCG	1 cut(s)	72
BshFI	GGCC	2 cut(s)	13, 71
BshVI	ATCGAT	1 cut(s)	368
BsiEI	CGRYCG	1 cut(s)	72
BsiSI	CCGG	4 cut(s)	10, 53, 72, 433
BslI	CCNNNNNNNGG	3 cut(s)	59, 202, 439
BsmAI	GTCTC	1 cut(s)	423
BsnI	GGCC	2 cut(s)	13, 71
Bso31I	GGTCTC	1 cut(s)	423
BspACI	CCGC	4 cut(s)	125, 278, 414, 463
BspANI	GGCC	2 cut(s)	13, 71
BspDI	ATCGAT	1 cut(s)	368
BspHI	TCATGA	1 cut(s)	165
BspLI	GGNNCC	1 cut(s)	291
BspTNI	GGTCTC	1 cut(s)	423
BsrFI	RCCGGY	2 cut(s)	9, 71
BsrI	ACTGG	1 cut(s)	378
BssAI	RCCGGY	2 cut(s)	9, 71
BssNI	GRCGYC	1 cut(s)	326
Bst2UI	CCWGG	1 cut(s)	282
Bst4CI	ACNGT	2 cut(s)	205, 340
BstACI	GRCGYC	1 cut(s)	326
BstC8I	GCNNGC	2 cut(s)	11, 309
BstDEI	CTNAG	1 cut(s)	417
BstF5I	GGATG	1 cut(s)	229
BstMAI	GTCTC	1 cut(s)	423
BstMCI	CGRYCG	1 cut(s)	72
BstMWI	GCNNNNNNNGC	1 cut(s)	133
BstNI	CCWGG	1 cut(s)	282
BstPAI	GACNNNNGTC	1 cut(s)	329
BstSCI	CCNGG	2 cut(s)	51, 280
BstZI	CGGCCG	1 cut(s)	69
Bsu15I	ATCGAT	1 cut(s)	368
BsuRI	GGCC	2 cut(s)	13, 71
BsuTUI	ATCGAT	1 cut(s)	368
BtsCI	GGATG	1 cut(s)	229
Cac8I	GCNNGC	2 cut(s)	11, 309
CaiI	CAGNNNCTG	1 cut(s)	465
CciI	TCATGA	1 cut(s)	165
Cfr10I	RCCGGY	2 cut(s)	9, 71
Cfr13I	GGNCC	2 cut(s)	122, 289
ClaI	ATCGAT	1 cut(s)	368
CpoI	CGGWCCG	1 cut(s)	122
CseI	GACGC	2 cut(s)	97, 334
CspI	CGGWCCG	1 cut(s)	122
CviAII	CATG	1 cut(s)	166
CviJI	RGCY	7 cut(s)	13, 71, 171, 195, 307, 413, 462
CviKI_1	RGCY	7 cut(s)	13, 71, 171, 195, 307, 413, 462
DdeI	CTNAG	1 cut(s)	417
EaeI	YGGCCR	2 cut(s)	11, 69
EagI	CGGCCG	1 cut(s)	69
EclXI	CGGCCG	1 cut(s)	69
Eco31I	GGTCTC	1 cut(s)	423
Eco47I	GGWCC	2 cut(s)	122, 289
Eco52I	CGGCCG	1 cut(s)	69
EcoO109I	RGGNCCY	1 cut(s)	289
EcoRII	CCWGG	1 cut(s)	280
FaeI	CATG	1 cut(s)	169
FaiI	YATR	8 cut(s)	167, 226, 243, 263, 336, 350, 362, 493
FatI	CATG	1 cut(s)	165
FauI	CCCGC	1 cut(s)	285
Fnu4HI	GCNGC	2 cut(s)	414, 463
FokI	GGATG	1 cut(s)	216
Fsp4HI	GCNGC	2 cut(s)	414, 463
GluI	GCNGC	2 cut(s)	414, 463
HaeIII	GGCC	2 cut(s)	13, 71
HapII	CCGG	4 cut(s)	10, 53, 72, 433
HgaI	GACGC	2 cut(s)	97, 334
Hin1I	GRCGYC	1 cut(s)	326
Hin1II	CATG	1 cut(s)	169
HinfI	GANTC	4 cut(s)	4, 19, 63, 392
HpaII	CCGG	4 cut(s)	10, 53, 72, 433
HphI	GGTGA	2 cut(s)	266, 296
Hpy166II	GTNNAC	2 cut(s)	213, 317
Hpy188I	TCNGA	4 cut(s)	122, 201, 220, 234
Hpy188III	TCNNGA	4 cut(s)	112, 166, 355, 448
Hpy8I	GTNNAC	2 cut(s)	213, 317
Hpy99I	CGWCG	1 cut(s)	205
HpyAV	CCTTC	1 cut(s)	281
HpyCH4III	ACNGT	2 cut(s)	205, 340
HpyCH4V	TGCA	4 cut(s)	45, 261, 311, 401
HpyF10VI	GCNNNNNNNGC	1 cut(s)	133
HpyF3I	CTNAG	1 cut(s)	417
Hsp92I	GRCGYC	1 cut(s)	326
Hsp92II	CATG	1 cut(s)	169
KroI	GCCGGC	1 cut(s)	9
KroNI	GCCGGC	1 cut(s)	11
LmnI	GCTCC	1 cut(s)	105
LweI	GCATC	4 cut(s)	46, 238, 360, 477
MaeIII	GTNAC	2 cut(s)	109, 299
MluCI	AATT	1 cut(s)	181
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	1 cut(s)	224
MnlI	CCTC	6 cut(s)	136, 140, 207, 280, 433, 465
MroNI	GCCGGC	1 cut(s)	9
MseI	TTAA	1 cut(s)	207
MslI	CAYNNNNRTG	1 cut(s)	234
MspA1I	CMGCKG	1 cut(s)	465
MspI	CCGG	4 cut(s)	10, 53, 72, 433
MspR9I	CCNGG	2 cut(s)	53, 282
MvaI	CCWGG	1 cut(s)	282
MwoI	GCNNNNNNNGC	1 cut(s)	133
NaeI	GCCGGC	1 cut(s)	11
NciI	CCSGG	1 cut(s)	53
NgoMIV	GCCGGC	1 cut(s)	9
NlaIII	CATG	1 cut(s)	169
NlaIV	GGNNCC	1 cut(s)	291
NmeAIII	GCCGAG	1 cut(s)	47
NmuCI	GTSAC	1 cut(s)	109
PagI	TCATGA	1 cut(s)	165
PdiI	GCCGGC	1 cut(s)	11
PfeI	GAWTC	2 cut(s)	63, 392
PkrI	GCNGC	2 cut(s)	415, 464
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PpuMI	RGGWCCY	1 cut(s)	289
PshAI	GACNNNNGTC	1 cut(s)	329
Psp5II	RGGWCCY	1 cut(s)	289
Psp6I	CCWGG	1 cut(s)	280
PspGI	CCWGG	1 cut(s)	280
PspN4I	GGNNCC	1 cut(s)	291
PspPI	GGNCC	2 cut(s)	122, 289
PspPPI	RGGWCCY	1 cut(s)	289
PstNI	CAGNNNCTG	1 cut(s)	465
RseI	CAYNNNNRTG	1 cut(s)	234
Rsr2I	CGGWCCG	1 cut(s)	122
RsrII	CGGWCCG	1 cut(s)	122
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	2 cut(s)	414, 463
Sau96I	GGNCC	2 cut(s)	122, 289
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	2 cut(s)	53, 282
SetI	ASST	3 cut(s)	173, 309, 459
SfaNI	GCATC	4 cut(s)	46, 238, 360, 477
SinI	GGWCC	2 cut(s)	122, 289
SmiMI	CAYNNNNRTG	1 cut(s)	234
SmlI	CTYRAG	1 cut(s)	355
SmoI	CTYRAG	1 cut(s)	355
Sse9I	AATT	1 cut(s)	181
SsiI	CCGC	4 cut(s)	125, 278, 414, 463
StyD4I	CCNGG	2 cut(s)	51, 280
TaaI	ACNGT	2 cut(s)	205, 340
TaqI	TCGA	2 cut(s)	81, 368
TasI	AATT	1 cut(s)	181
TauI	GCSGC	2 cut(s)	416, 465
TfiI	GAWTC	2 cut(s)	63, 392
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TseFI	GTSAC	1 cut(s)	109
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	1 cut(s)	99
VpaK11BI	GGWCC	2 cut(s)	122, 289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.