AT3G46550

Fasciclin-like arabinogalactan protein 4

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
17136346 .. 17138259
1914 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G46550.1

Sequence Viewer

Length: 1263 bp
ATGGCGAACGTAATCTCAATTTCCCATTTTACCCTTCTCGCATTACCTTATTTACTTCTCCTCCTATCTTCCACCGCCGCCGCAATTAACGTCACCGCCGTCCTCTCCTCTTTCCCTAATCTCTCATCTTTCTCAAACCTCCTCGTCTCTTCCGGCATCGCTGCCGAACTCTCCGGTAGAAACTCATTAACCCTCCTCGCCGTTCCCAATTCTCAATTCTCCTCCGCCTCCTTGGACCTCACGCGCCGCCTACCTCCTTCCGCCCTAGCAGATCTCCTCCGCTTCCATGTCCTCCTCCAGTTCCTTTCAGATTCCGATCTCCGACGTATTCCACCGTCAGGCTCCGCCGTCACTACTCTCTACGAAGCTTCCGGTCGTACATTCTTTGGATCTGGATCCGTTAACGTAACCCGTGACCCGGCTTCAGGATCCGTCACGATCGGATCTCCAGCCACCAAAAACGTCACTGTGTTAAAGCTTCTCGAGACCAAACCTCCCAACATAACCGTCCTCACCGTGGACTCCCTCATCGTCCCCACCGGAATCGATATCACCGCATCGGAGACTCTCACTCCACCGCCGACGTCAACATCTCTCTCCCCTCCACCGGCGGGAATCAATCTCACTCAGATACTAATCAACGGACACAACTTCAACGTCGCTCTATCCCTCCTCGTCGCTTCCGGTGTCATAACAGAATTCGAAAACGACGAACGTGGCGCCGGCATCACAGTCTTCGTCCCCACCGACTCCGCCTTCTCCGATCTCCCTTCCAACGTTAACCTCCAGTCATTACCGGCGGAGCAAAAAGCATTCGTGTTAAAATTCCACGTGCTACATTCATACTACACTCTCGGTTCACTAGAATCAATAACCAACCCGGTTCAACCGACATTAGCCACTGAAGAAATGGGAGCCGGTTCATACACTCTCAACATCTCCCGGGTTAACGGGTCAATCGTAACGATCAATTCGGGTGTGGTTTTAGCTGTTGTGACTCAAACGGCTTTTGATCAAAACCCGGTTTCTGTTTTCGGAGTATCCAAAGTTCTTTTGCCTAAAGAACTATTTCCAAAATCGGGTCAACCCGTTGCCACAGCTCCTCCACAGGAGATTTCTTTGTCGCCGGAGAGTTCTAGTGAACAGCCGTCACGACTAGTATCACCACCGCGTGAGATAGTTTCTTCCGGCGCGGTTAAAAGACCACTTGGTTTCTTGGTCTTGTGGTGTTGGTGTATAGCATTTTGTTATGTTTTGGTATGA

Protein Analysis

420

Amino Acids

44.24

Weight (kDa)

5.57

Isoelectric Point (pI)

47.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 40 - 155 1.9e-06 Fasciclin domain
Fasciclin PF02469 217 - 353 1.1e-16 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015283)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 587
AccB1I GGYRCC 1 cut(s) 719
AccII CGCG 3 cut(s) 244, 1171, 1193
AclI AACGTT 1 cut(s) 777
AclWI GGATC 6 cut(s) 390, 397, 403, 423, 436, 451
AcsI RAATTY 2 cut(s) 698, 824
AcuI CTGAAG 2 cut(s) 408, 924
AcvI CACGTG 1 cut(s) 832
AcyI GRCGYC 2 cut(s) 584, 720
AdeI CACNNNGTG 1 cut(s) 1172
AfaI GTAC 1 cut(s) 379
AfiI CCNNNNNNNGG 7 cut(s) 338, 418, 425, 517, 607, 611, 1079
AgsI TTSAA 2 cut(s) 655, 887
AhlI ACTAGT 1 cut(s) 1156
AjuI GAANNNNNNNTTGG 2 cut(s) 200, 232
AluBI AGCT 4 cut(s) 368, 478, 989, 1100
AluI AGCT 4 cut(s) 368, 478, 989, 1100
Alw26I GTCTC 3 cut(s) 151, 479, 557
AlwI GGATC 6 cut(s) 390, 397, 403, 423, 436, 451
Ama87I CYCGRG 2 cut(s) 482, 942
ApeKI GCWGC 1 cut(s) 161
ApoI RAATTY 2 cut(s) 698, 824
Asp700I GAANNNNTTC 1 cut(s) 1068
AspLEI GCGC 3 cut(s) 246, 722, 1193
AspS9I GGNCC 1 cut(s) 235
AsuC2I CCSGG 5 cut(s) 419, 881, 943, 944, 1022
AsuHPI GGTGA 4 cut(s) 85, 505, 544, 1155
AsuII TTCGAA 1 cut(s) 702
AvaI CYCGRG 2 cut(s) 482, 942
AvaII GGWCC 1 cut(s) 235
BamHI GGATCC 2 cut(s) 395, 428
BanI GGYRCC 1 cut(s) 719
BbrPI CACGTG 1 cut(s) 832
BbsI GAAGAC 1 cut(s) 727
BbvI GCAGC 1 cut(s) 148
BceAI ACGGC 5 cut(s) 83, 185, 332, 1020, 1132
BciVI GTATCC 1 cut(s) 1051
BclI TGATCA 1 cut(s) 1012
BcnI CCSGG 5 cut(s) 419, 881, 943, 944, 1022
BcoDI GTCTC 3 cut(s) 151, 479, 557
BcuI ACTAGT 1 cut(s) 1156
BfaI CTAG 4 cut(s) 266, 863, 1137, 1157
BfoI RGCGCY 1 cut(s) 723
BfuI GTATCC 1 cut(s) 1051
BglII AGATCT 1 cut(s) 271
BisI GCNGC 4 cut(s) 78, 81, 162, 247
BlsI GCNGC 4 cut(s) 79, 82, 163, 248
Bme1390I CCNGG 5 cut(s) 419, 881, 943, 944, 1022
Bme18I GGWCC 1 cut(s) 235
BmeT110I CYCGRG 2 cut(s) 482, 942
BmgT120I GGNCC 1 cut(s) 235
BmiI GGNNCC 5 cut(s) 343, 397, 430, 721, 916
BmrFI CCNGG 5 cut(s) 419, 881, 943, 944, 1022
BmsI GCATC 3 cut(s) 165, 566, 735
BpiI GAAGAC 1 cut(s) 727
BpmI CTGGAG 3 cut(s) 281, 432, 770
Bpu14I TTCGAA 1 cut(s) 702
BpuMI CCSGG 5 cut(s) 419, 881, 943, 944, 1022
Bsa29I ATCGAT 1 cut(s) 546
BsaAI YACGTR 1 cut(s) 832
BsaBI GATNNNNATC 3 cut(s) 315, 394, 635
BsaHI GRCGYC 2 cut(s) 584, 720
BsaI GGTCTC 1 cut(s) 479
BsaJI CCNNGG 3 cut(s) 231, 516, 942
BsaWI WCCGGW 4 cut(s) 173, 371, 539, 683
BsaXI ACNNNNNCTCC 8 cut(s) 45, 75, 478, 508, 556, 586, 1087, 1117
Bsc4I CCNNNNNNNGG 7 cut(s) 338, 418, 425, 517, 607, 611, 1079
Bse118I RCCGGY 4 cut(s) 607, 722, 796, 917
Bse1I ACTGG 2 cut(s) 298, 787
Bse8I GATNNNNATC 3 cut(s) 315, 394, 635
BseCI ATCGAT 1 cut(s) 546
BseDI CCNNGG 3 cut(s) 231, 516, 942
BseJI GATNNNNATC 3 cut(s) 315, 394, 635
BseLI CCNNNNNNNGG 7 cut(s) 338, 418, 425, 517, 607, 611, 1079
BseMII CTCAG 1 cut(s) 641
BseNI ACTGG 2 cut(s) 298, 787
BseRI GAGGAG 9 cut(s) 50, 97, 131, 185, 211, 266, 284, 662, 1092
BseXI GCAGC 1 cut(s) 148
Bsh1236I CGCG 3 cut(s) 244, 1171, 1193
Bsh1285I CGRYCG 2 cut(s) 376, 441
BshNI GGYRCC 1 cut(s) 719
BshVI ATCGAT 1 cut(s) 546
BsiEI CGRYCG 2 cut(s) 376, 441
BsiHKCI CYCGRG 2 cut(s) 482, 942
BslFI GGGAC 2 cut(s) 518, 725
BslI CCNNNNNNNGG 7 cut(s) 338, 418, 425, 517, 607, 611, 1079
BsmAI GTCTC 3 cut(s) 151, 479, 557
BsmBI CGTCTC 1 cut(s) 151
BsmFI GGGAC 2 cut(s) 518, 725
BsmI GAATGC 1 cut(s) 812
Bso31I GGTCTC 1 cut(s) 479
BsoBI CYCGRG 2 cut(s) 482, 942
Bsp119I TTCGAA 1 cut(s) 702
BspCNI CTCAG 1 cut(s) 640
BspDI ATCGAT 1 cut(s) 546
BspFNI CGCG 3 cut(s) 244, 1171, 1193
BspLI GGNNCC 5 cut(s) 343, 397, 430, 721, 916
BspPI GGATC 6 cut(s) 390, 397, 403, 423, 436, 451
BspT104I TTCGAA 1 cut(s) 702
BspT107I GGYRCC 1 cut(s) 719
BspTNI GGTCTC 1 cut(s) 479
BsrFI RCCGGY 4 cut(s) 607, 722, 796, 917
BsrI ACTGG 2 cut(s) 298, 787
BssAI RCCGGY 4 cut(s) 607, 722, 796, 917
BssECI CCNNGG 3 cut(s) 231, 516, 942
BssNI GRCGYC 2 cut(s) 584, 720
BssT1I CCWWGG 1 cut(s) 231
Bst4CI ACNGT 5 cut(s) 336, 469, 508, 517, 733
Bst6I CTCTTC 1 cut(s) 154
BstACI GRCGYC 2 cut(s) 584, 720
BstBAI YACGTR 1 cut(s) 832
BstBI TTCGAA 1 cut(s) 702
BstC8I GCNNGC 1 cut(s) 724
BstDEI CTNAG 1 cut(s) 627
BstDSI CCRYGG 1 cut(s) 516
BstFNI CGCG 3 cut(s) 244, 1171, 1193
BstH2I RGCGCY 1 cut(s) 723
BstHHI GCGC 3 cut(s) 246, 722, 1193
BstMAI GTCTC 3 cut(s) 151, 479, 557
BstMCI CGRYCG 2 cut(s) 376, 441
BstSCI CCNGG 5 cut(s) 417, 879, 941, 942, 1020
BstUI CGCG 3 cut(s) 244, 1171, 1193
BstV1I GCAGC 1 cut(s) 148
BstV2I GAAGAC 1 cut(s) 727
BstX2I RGATCY 5 cut(s) 271, 389, 395, 428, 443
BstYI RGATCY 5 cut(s) 271, 389, 395, 428, 443
Bsu15I ATCGAT 1 cut(s) 546
BsuI GTATCC 1 cut(s) 1051
BsuTUI ATCGAT 1 cut(s) 546
BtgI CCRYGG 1 cut(s) 516
BtgZI GCGATG 1 cut(s) 142
BtsIMutI CAGTG 2 cut(s) 465, 900
Cac8I GCNNGC 1 cut(s) 724
CfoI GCGC 3 cut(s) 246, 722, 1193
Cfr10I RCCGGY 4 cut(s) 607, 722, 796, 917
Cfr13I GGNCC 1 cut(s) 235
Cfr9I CCCGGG 1 cut(s) 942
ClaI ATCGAT 1 cut(s) 546
Csp6I GTAC 1 cut(s) 378
CviAII CATG 1 cut(s) 287
CviQI GTAC 1 cut(s) 378
DdeI CTNAG 1 cut(s) 627
DinI GGCGCC 1 cut(s) 721
DraIII CACNNNGTG 1 cut(s) 1172
Eam1104I CTCTTC 1 cut(s) 154
EarI CTCTTC 1 cut(s) 154
EciI GGCGGA 5 cut(s) 214, 250, 334, 742, 815
Eco130I CCWWGG 1 cut(s) 231
Eco31I GGTCTC 1 cut(s) 479
Eco32I GATATC 1 cut(s) 550
Eco47I GGWCC 1 cut(s) 235
Eco57I CTGAAG 2 cut(s) 408, 924
Eco72I CACGTG 1 cut(s) 832
Eco88I CYCGRG 2 cut(s) 482, 942
EcoRI GAATTC 1 cut(s) 698
EcoRV GATATC 1 cut(s) 550
EcoT14I CCWWGG 1 cut(s) 231
EgeI GGCGCC 1 cut(s) 721
EheI GGCGCC 1 cut(s) 721
ErhI CCWWGG 1 cut(s) 231
Esp3I CGTCTC 1 cut(s) 151
FaeI CATG 1 cut(s) 290
FaiI YATR 8 cut(s) 288, 503, 692, 844, 925, 1238, 1251, 1261
FaqI GGGAC 2 cut(s) 518, 725
FatI CATG 1 cut(s) 286
FauI CCCGC 1 cut(s) 604
FbaI TGATCA 1 cut(s) 1012
Fnu4HI GCNGC 4 cut(s) 78, 81, 162, 247
Fsp4HI GCNGC 4 cut(s) 78, 81, 162, 247
FspBI CTAG 4 cut(s) 266, 863, 1137, 1157
GlaI GCGC 3 cut(s) 245, 721, 1192
GluI GCNGC 4 cut(s) 78, 81, 162, 247
GsuI CTGGAG 3 cut(s) 281, 432, 770
HaeII RGCGCY 1 cut(s) 723
HhaI GCGC 3 cut(s) 246, 722, 1193
Hin1I GRCGYC 2 cut(s) 584, 720
Hin1II CATG 1 cut(s) 290
Hin6I GCGC 3 cut(s) 244, 720, 1191
HinP1I GCGC 3 cut(s) 244, 720, 1191
HincII GTYRAC 5 cut(s) 403, 588, 781, 949, 1085
HindII GTYRAC 5 cut(s) 403, 588, 781, 949, 1085
HindIII AAGCTT 2 cut(s) 366, 476
HinfI GANTC 8 cut(s) 311, 521, 543, 565, 615, 749, 866, 997
HpaI GTTAAC 3 cut(s) 403, 781, 949
HphI GGTGA 4 cut(s) 85, 505, 544, 1155
Hpy166II GTNNAC 8 cut(s) 403, 520, 588, 781, 860, 949, 1085, 1142
Hpy188I TCNGA 8 cut(s) 310, 316, 323, 443, 562, 630, 763, 1037
Hpy188III TCNNGA 6 cut(s) 393, 426, 436, 482, 484, 1152
Hpy8I GTNNAC 8 cut(s) 403, 520, 588, 781, 860, 949, 1085, 1142
Hpy99I CGWCG 5 cut(s) 327, 586, 662, 680, 713
HpyAV CCTTC 4 cut(s) 44, 267, 766, 780
HpyCH4III ACNGT 5 cut(s) 336, 469, 508, 517, 733
HpyF3I CTNAG 1 cut(s) 627
Hsp92I GRCGYC 2 cut(s) 584, 720
Hsp92II CATG 1 cut(s) 290
HspAI GCGC 3 cut(s) 244, 720, 1191
KasI GGCGCC 1 cut(s) 719
KroI GCCGGC 1 cut(s) 722
KroNI GCCGGC 1 cut(s) 724
Ksp22I TGATCA 1 cut(s) 1012
KspAI GTTAAC 3 cut(s) 403, 781, 949
LmnI GCTCC 4 cut(s) 347, 802, 914, 1105
Lsp1109I GCAGC 1 cut(s) 148
LweI GCATC 3 cut(s) 165, 566, 735
MaeI CTAG 4 cut(s) 266, 863, 1137, 1157
MaeIII GTNAC 9 cut(s) 91, 349, 406, 413, 433, 463, 961, 994, 1149
MboII GAAGA 5 cut(s) 60, 141, 727, 917, 1176
MflI RGATCY 5 cut(s) 271, 389, 395, 428, 443
MluCI AATT 7 cut(s) 18, 84, 208, 215, 698, 824, 970
Mly113I GGCGCC 1 cut(s) 720
MlyI GAGTC 4 cut(s) 515, 559, 743, 991
MmeI TCCRAC 2 cut(s) 346, 798
MroNI GCCGGC 1 cut(s) 722
MroXI GAANNNNTTC 1 cut(s) 1068
MseI TTAA 8 cut(s) 87, 188, 402, 473, 780, 821, 948, 1197
MspR9I CCNGG 5 cut(s) 419, 881, 943, 944, 1022
Mva1269I GAATGC 1 cut(s) 812
MvnI CGCG 3 cut(s) 244, 1171, 1193
NaeI GCCGGC 1 cut(s) 724
NarI GGCGCC 1 cut(s) 720
NciI CCSGG 5 cut(s) 419, 881, 943, 944, 1022
NgoMIV GCCGGC 1 cut(s) 722
NlaIII CATG 1 cut(s) 290
NlaIV GGNNCC 5 cut(s) 343, 397, 430, 721, 916
NmuCI GTSAC 7 cut(s) 91, 349, 413, 433, 463, 994, 1149
NspV TTCGAA 1 cut(s) 702
PaeR7I CTCGAG 1 cut(s) 482
PcsI WCGNNNNNNNCGW 4 cut(s) 96, 708, 744, 957
PctI GAATGC 1 cut(s) 812
PdiI GCCGGC 1 cut(s) 724
PdmI GAANNNNTTC 1 cut(s) 1068
PfeI GAWTC 4 cut(s) 311, 543, 615, 866
PkrI GCNGC 4 cut(s) 79, 82, 163, 248
Ple19I CGATCG 1 cut(s) 441
PleI GAGTC 4 cut(s) 515, 559, 743, 991
PluTI GGCGCC 1 cut(s) 723
PmaCI CACGTG 1 cut(s) 832
PmlI CACGTG 1 cut(s) 832
PpsI GAGTC 4 cut(s) 515, 559, 743, 991
Ppu21I YACGTR 1 cut(s) 832
Psp1406I AACGTT 1 cut(s) 777
PspCI CACGTG 1 cut(s) 832
PspN4I GGNNCC 5 cut(s) 343, 397, 430, 721, 916
PspPI GGNCC 1 cut(s) 235
PsrI GAACNNNNNNTAC 2 cut(s) 1032, 1064
PsuI RGATCY 5 cut(s) 271, 389, 395, 428, 443
PvuI CGATCG 1 cut(s) 441
RsaI GTAC 1 cut(s) 379
RsaNI GTAC 1 cut(s) 378
SaqAI TTAA 8 cut(s) 87, 188, 402, 473, 780, 821, 948, 1197
SatI GCNGC 4 cut(s) 78, 81, 162, 247
Sau96I GGNCC 1 cut(s) 235
SchI GAGTC 4 cut(s) 515, 559, 743, 991
ScrFI CCNGG 5 cut(s) 419, 881, 943, 944, 1022
SfaNI GCATC 3 cut(s) 165, 566, 735
SfoI GGCGCC 1 cut(s) 721
Sfr274I CTCGAG 1 cut(s) 482
SfuI TTCGAA 1 cut(s) 702
SgrAI CRCCGGYG 1 cut(s) 607
SinI GGWCC 1 cut(s) 235
SlaI CTCGAG 1 cut(s) 482
SmaI CCCGGG 1 cut(s) 944
SmlI CTYRAG 1 cut(s) 482
SmoI CTYRAG 1 cut(s) 482
SpeI ACTAGT 1 cut(s) 1156
Sse9I AATT 7 cut(s) 18, 84, 208, 215, 698, 824, 970
SspDI GGCGCC 1 cut(s) 719
SspMI CTAG 4 cut(s) 266, 863, 1137, 1157
StyD4I CCNGG 5 cut(s) 417, 879, 941, 942, 1020
StyI CCWWGG 1 cut(s) 231
TaaI ACNGT 5 cut(s) 336, 469, 508, 517, 733
TaqI TCGA 3 cut(s) 483, 546, 702
TasI AATT 7 cut(s) 18, 84, 208, 215, 698, 824, 970
TauI GCSGC 3 cut(s) 80, 83, 249
TfiI GAWTC 4 cut(s) 311, 543, 615, 866
Tru1I TTAA 8 cut(s) 87, 188, 402, 473, 780, 821, 948, 1197
Tru9I TTAA 8 cut(s) 87, 188, 402, 473, 780, 821, 948, 1197
TscAI CASTG 2 cut(s) 472, 907
TseFI GTSAC 7 cut(s) 91, 349, 413, 433, 463, 994, 1149
TseI GCWGC 1 cut(s) 161
Tsp45I GTSAC 7 cut(s) 91, 349, 413, 433, 463, 994, 1149
TspDTI ATGAA 2 cut(s) 831, 912
TspGWI ACGGA 3 cut(s) 388, 421, 657
TspMI CCCGGG 1 cut(s) 942
TspRI CASTG 2 cut(s) 472, 907
VpaK11BI GGWCC 1 cut(s) 235
XapI RAATTY 2 cut(s) 698, 824
XcmI CCANNNNNNNNNTGG 1 cut(s) 907
XhoI CTCGAG 1 cut(s) 482
XmaI CCCGGG 1 cut(s) 942
XmnI GAANNNNTTC 1 cut(s) 1068
XspI CTAG 4 cut(s) 266, 863, 1137, 1157
ZraI GACGTC 1 cut(s) 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.