RLG00000035721

Fasciclin-like arabinogalactan protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
70824166 .. 70825658
1493 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035721

Sequence Viewer

Length: 1317 bp
ATGGCCTTTACATCCCCAAATCCCCATTTTACCCCTACCCACTCCCTCTATTTCCTCCTCCTCCTCACTTCCTCTCTGCCCTTTACTCTTTCCATCAACATCACCGCTCTCCTCTGCCCCTTCCCCGACCTCTCCGACTTCACTTCCCTCCTCTCCGCCGCCATCTTCTCAGATCTCTCCCTCCGCTCCTCCCTCACCCTCCTCGCCGTCCCTAACCCTTTCCTCTCCTCCACCTCCGACCTCACGCGCCACCTCTCCCCCTCCTCACGCGCGGACGTCCTCCGCTACCACGTCCTCCTCGAGTACCTCTCCCTCTCCGACCTCGCCCGCATCCCCCCTTCGGGAAAACTCGTAACCACTCTCTACCAGACCACTGGACGCGCCACCAACGACTTCGGCTCCGTCAATCTCACTCGCGACCCGACCACCGGGATCGTCTCCGTCCGCTCCCCTGCCACCTTCTCCCCCTCAAACGCCACCGTTTTGGGCCTCGTCAAGACTCTTCCCTACAATGTCAGCATCTTTTCCGTTAATTCCCTCCTTGTCCCTTACGGCTTCGACCTCATGGCCTCCGAGACCCGGCCCCCTCTGGGCCTCAACATCACCAAGGCCCTGATCGACGGCCACAACTTCAACGTCGCCGCCTCCATGCTCGCCGCATCCGGCGTCGTCGAGGAATTCGAGGCCGACGAGGGCGGCGCCGGAATCACACTCTTCGTCCCTACCGACACTGCCTTTTCCGACCTCCCCTCAAACGTGAGGCTGCAATCGCTCCCGGCGGATAAGAAATCAGTGGTGTTGAAGTTCCATGTGCTCCATTCCTACTACCCATTGGGCTCGCTCGAGTCGATTGTGAACCCGGTCCAGCCCACATTGGCTACAGAGCTGGTGGGAGCCGGTAGCTACACTCTCAACATCAGCAGAAACAACGGCTCCGTTTCAATCAACACCGGAATCATCCAGGCCTCGGTGACCCAGACGGTGTTCGATCAAAAGCCGGTGGCCATTTTCGGAGTTTCCAGGGTTTTGTTGCCCAAAGAGATTTTTGGGAGCACCCCGGCAGTCACATCCAGGCCCGGGACGCCAGTTTCCGGCGGGGCTGAGACGCCGGTCAGTGCTCCTTCGCCGGACAATTCAATGAGTGGGCAGGAACTCTCTTCGCCGCCTGGTTTTAAGGAGATAAAATCCGAGGGTGCTGCCATTACTGGGCTGTGGAGGTTGGGGGTTGCTTCATGTTGTATAGGATTAAAGAACAATTTTTTGTTTCTTGGATCTTGCGGCATTCCTCCTGTAAAGTTGTTCAAAGTTTGTGGTTGA

Protein Analysis

439

Amino Acids

46.27

Weight (kDa)

6.38

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 210 - 345 6.5e-18 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015283)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 279
AccB1I GGYRCC 1 cut(s) 698
AccBSI CCGCTC 3 cut(s) 107, 186, 447
AccII CGCG 5 cut(s) 247, 270, 272, 381, 417
AclWI GGATC 2 cut(s) 440, 1279
AcoI YGGCCR 2 cut(s) 622, 1002
AcsI RAATTY 1 cut(s) 677
AcyI GRCGYC 5 cut(s) 276, 666, 699, 1082, 1106
AfaI GTAC 1 cut(s) 305
AfiI CCNNNNNNNGG 9 cut(s) 340, 341, 428, 579, 590, 967, 1077, 1091, 1206
AgsI TTSAA 5 cut(s) 634, 802, 942, 1137, 1303
AjiI CACGTC 1 cut(s) 292
AjnI CCWGG 4 cut(s) 960, 1019, 1070, 1165
AluBI AGCT 2 cut(s) 886, 903
AluI AGCT 2 cut(s) 886, 903
Alw21I GWGCWC 3 cut(s) 816, 1055, 1120
Alw26I GTCTC 3 cut(s) 442, 569, 1097
AlwI GGATC 2 cut(s) 440, 1279
Ama87I CYCGRG 3 cut(s) 299, 842, 1076
ApeKI GCWGC 2 cut(s) 763, 1196
ApoI RAATTY 1 cut(s) 677
AspLEI GCGC 4 cut(s) 249, 272, 383, 701
AspS9I GGNCC 6 cut(s) 487, 582, 592, 610, 862, 1074
AsuC2I CCSGG 7 cut(s) 430, 580, 776, 860, 1058, 1077, 1078
AsuHPI GGTGA 4 cut(s) 94, 187, 595, 982
AvaI CYCGRG 3 cut(s) 299, 842, 1076
AvaII GGWCC 1 cut(s) 862
BalI TGGCCA 1 cut(s) 1004
BanI GGYRCC 1 cut(s) 698
BanII GRGCYC 1 cut(s) 839
Bbv12I GWGCWC 3 cut(s) 816, 1055, 1120
BbvI GCAGC 2 cut(s) 750, 1183
BccI CCATC 2 cut(s) 101, 170
BceAI ACGGC 4 cut(s) 191, 568, 637, 946
BcgI CGANNNNNNTGC 2 cut(s) 1178, 1212
BciT130I CCWGG 4 cut(s) 962, 1021, 1072, 1167
BcnI CCSGG 7 cut(s) 430, 580, 776, 860, 1058, 1077, 1078
BcoDI GTCTC 3 cut(s) 442, 569, 1097
BfmI CTRYAG 1 cut(s) 879
BfoI RGCGCY 1 cut(s) 702
BglII AGATCT 1 cut(s) 172
BisI GCNGC 8 cut(s) 159, 642, 657, 697, 764, 1163, 1197, 1279
BlsI GCNGC 8 cut(s) 160, 643, 658, 698, 765, 1164, 1198, 1280
Bme18I GGWCC 1 cut(s) 862
BmeT110I CYCGRG 3 cut(s) 299, 842, 1076
BmgBI CACGTC 1 cut(s) 292
BmgT120I GGNCC 6 cut(s) 487, 582, 592, 610, 862, 1074
BmiI GGNNCC 5 cut(s) 400, 584, 700, 895, 934
BmrI ACTGGG 1 cut(s) 1215
BmsI GCATC 3 cut(s) 339, 528, 668
BmuI ACTGGG 1 cut(s) 1215
BoxI GACNNNNGTC 1 cut(s) 1109
BplI GAGNNNNNCTC 2 cut(s) 293, 325
BpuMI CCSGG 7 cut(s) 430, 580, 776, 860, 1058, 1077, 1078
BsaHI GRCGYC 5 cut(s) 276, 666, 699, 1082, 1106
BsaI GGTCTC 1 cut(s) 569
BsaJI CCNNGG 6 cut(s) 606, 966, 1020, 1056, 1076, 1188
BsaWI WCCGGW 1 cut(s) 950
BsaXI ACNNNNNCTCC 4 cut(s) 383, 413, 917, 947
Bsc4I CCNNNNNNNGG 9 cut(s) 340, 341, 428, 579, 590, 967, 1077, 1091, 1206
Bse118I RCCGGY 3 cut(s) 896, 997, 1108
Bse1I ACTGG 3 cut(s) 379, 1085, 1210
BseBI CCWGG 4 cut(s) 962, 1021, 1072, 1167
BseDI CCNNGG 6 cut(s) 606, 966, 1020, 1056, 1076, 1188
BseGI GGATG 5 cut(s) 11, 330, 659, 957, 1067
BseLI CCNNNNNNNGG 9 cut(s) 340, 341, 428, 579, 590, 967, 1077, 1091, 1206
BseMII CTCAG 2 cut(s) 183, 1092
BseNI ACTGG 3 cut(s) 379, 1085, 1210
BseXI GCAGC 2 cut(s) 750, 1183
Bsh1236I CGCG 5 cut(s) 247, 270, 272, 381, 417
BshNI GGYRCC 1 cut(s) 698
BsiHKAI GWGCWC 3 cut(s) 816, 1055, 1120
BsiHKCI CYCGRG 3 cut(s) 299, 842, 1076
BslFI GGGAC 4 cut(s) 194, 530, 704, 1093
BslI CCNNNNNNNGG 9 cut(s) 340, 341, 428, 579, 590, 967, 1077, 1091, 1206
BsmAI GTCTC 3 cut(s) 442, 569, 1097
BsmBI CGTCTC 2 cut(s) 442, 1097
BsmFI GGGAC 4 cut(s) 194, 530, 704, 1093
BsmI GAATGC 1 cut(s) 1281
Bso31I GGTCTC 1 cut(s) 569
BsoBI CYCGRG 3 cut(s) 299, 842, 1076
Bsp1286I GDGCHC 4 cut(s) 816, 839, 1055, 1120
Bsp143I GATC 5 cut(s) 172, 432, 615, 988, 1271
Bsp68I TCGCGA 1 cut(s) 417
BspCNI CTCAG 2 cut(s) 182, 1093
BspFNI CGCG 5 cut(s) 247, 270, 272, 381, 417
BspLI GGNNCC 5 cut(s) 400, 584, 700, 895, 934
BspPI GGATC 2 cut(s) 440, 1279
BspT107I GGYRCC 1 cut(s) 698
BspTNI GGTCTC 1 cut(s) 569
BsrBI CCGCTC 3 cut(s) 107, 186, 447
BsrFI RCCGGY 3 cut(s) 896, 997, 1108
BsrI ACTGG 3 cut(s) 379, 1085, 1210
BssAI RCCGGY 3 cut(s) 896, 997, 1108
BssECI CCNNGG 6 cut(s) 606, 966, 1020, 1056, 1076, 1188
BssMI GATC 5 cut(s) 172, 432, 615, 988, 1271
BssNI GRCGYC 5 cut(s) 276, 666, 699, 1082, 1106
BssT1I CCWWGG 1 cut(s) 606
Bst2UI CCWGG 4 cut(s) 962, 1021, 1072, 1167
Bst4CI ACNGT 2 cut(s) 481, 982
Bst6I CTCTTC 3 cut(s) 507, 719, 1162
BstACI GRCGYC 5 cut(s) 276, 666, 699, 1082, 1106
BstC8I GCNNGC 3 cut(s) 328, 654, 839
BstDEI CTNAG 2 cut(s) 169, 1101
BstEII GGTNACC 1 cut(s) 970
BstF5I GGATG 5 cut(s) 11, 330, 659, 957, 1067
BstFNI CGCG 5 cut(s) 247, 270, 272, 381, 417
BstH2I RGCGCY 1 cut(s) 702
BstHHI GCGC 4 cut(s) 249, 272, 383, 701
BstKTI GATC 5 cut(s) 175, 435, 618, 991, 1274
BstMAI GTCTC 3 cut(s) 442, 569, 1097
BstMBI GATC 5 cut(s) 172, 432, 615, 988, 1271
BstMWI GCNNNNNNNGC 2 cut(s) 769, 1081
BstNI CCWGG 4 cut(s) 962, 1021, 1072, 1167
BstPAI GACNNNNGTC 1 cut(s) 1109
BstPI GGTNACC 1 cut(s) 970
BstSFI CTRYAG 1 cut(s) 879
BstUI CGCG 5 cut(s) 247, 270, 272, 381, 417
BstV1I GCAGC 2 cut(s) 750, 1183
BstX2I RGATCY 2 cut(s) 172, 1271
BstXI CCANNNNNNTGG 2 cut(s) 374, 484
BstYI RGATCY 2 cut(s) 172, 1271
BtrI CACGTC 1 cut(s) 292
BtsCI GGATG 5 cut(s) 11, 330, 659, 957, 1067
BtsI GCAGTG 1 cut(s) 729
BtsIMutI CAGTG 4 cut(s) 372, 729, 798, 1120
BtuMI TCGCGA 1 cut(s) 417
Cac8I GCNNGC 3 cut(s) 328, 654, 839
CfoI GCGC 4 cut(s) 249, 272, 383, 701
Cfr10I RCCGGY 3 cut(s) 896, 997, 1108
Cfr13I GGNCC 6 cut(s) 487, 582, 592, 610, 862, 1074
Cfr9I CCCGGG 1 cut(s) 1076
CseI GACGC 4 cut(s) 387, 655, 1090, 1114
Csp6I GTAC 1 cut(s) 304
CspCI CAANNNNNGTGG 1 cut(s) 1291
CviAII CATG 4 cut(s) 565, 649, 809, 1233
CviQI GTAC 1 cut(s) 304
DdeI CTNAG 2 cut(s) 169, 1101
DinI GGCGCC 1 cut(s) 700
DpnI GATC 5 cut(s) 174, 434, 617, 990, 1273
DpnII GATC 5 cut(s) 172, 432, 615, 988, 1271
EaeI YGGCCR 2 cut(s) 622, 1002
Eam1104I CTCTTC 3 cut(s) 507, 719, 1162
EarI CTCTTC 3 cut(s) 507, 719, 1162
EciI GGCGGA 2 cut(s) 145, 794
Eco130I CCWWGG 1 cut(s) 606
Eco147I AGGCCT 1 cut(s) 965
Eco24I GRGCYC 1 cut(s) 839
Eco31I GGTCTC 1 cut(s) 569
Eco47I GGWCC 1 cut(s) 862
Eco88I CYCGRG 3 cut(s) 299, 842, 1076
Eco91I GGTNACC 1 cut(s) 970
EcoO109I RGGNCCY 1 cut(s) 610
EcoO65I GGTNACC 1 cut(s) 970
EcoRI GAATTC 1 cut(s) 677
EcoRII CCWGG 4 cut(s) 960, 1019, 1070, 1165
EcoT14I CCWWGG 1 cut(s) 606
EcoT38I GRGCYC 1 cut(s) 839
EgeI GGCGCC 1 cut(s) 700
EheI GGCGCC 1 cut(s) 700
ErhI CCWWGG 1 cut(s) 606
Esp3I CGTCTC 2 cut(s) 442, 1097
FaeI CATG 4 cut(s) 568, 652, 812, 1236
FaiI YATR 5 cut(s) 566, 650, 810, 1234, 1241
FaqI GGGAC 4 cut(s) 194, 530, 704, 1093
FatI CATG 4 cut(s) 564, 648, 808, 1232
FauI CCCGC 2 cut(s) 335, 1088
Fnu4HI GCNGC 8 cut(s) 159, 642, 657, 697, 764, 1163, 1197, 1279
FokI GGATG 4 cut(s) 317, 646, 944, 1054
FriOI GRGCYC 1 cut(s) 839
Fsp4HI GCNGC 8 cut(s) 159, 642, 657, 697, 764, 1163, 1197, 1279
GlaI GCGC 4 cut(s) 248, 271, 382, 700
GluI GCNGC 8 cut(s) 159, 642, 657, 697, 764, 1163, 1197, 1279
HaeII RGCGCY 1 cut(s) 702
HgaI GACGC 4 cut(s) 387, 655, 1090, 1114
HhaI GCGC 4 cut(s) 249, 272, 383, 701
Hin1I GRCGYC 5 cut(s) 276, 666, 699, 1082, 1106
Hin1II CATG 4 cut(s) 568, 652, 812, 1236
Hin6I GCGC 4 cut(s) 247, 270, 381, 699
HinP1I GCGC 4 cut(s) 247, 270, 381, 699
HinfI GANTC 4 cut(s) 499, 705, 845, 954
HphI GGTGA 4 cut(s) 94, 187, 595, 982
Hpy166II GTNNAC 1 cut(s) 856
Hpy188I TCNGA 8 cut(s) 136, 172, 238, 319, 574, 742, 1013, 1189
Hpy188III TCNNGA 3 cut(s) 342, 416, 496
Hpy8I GTNNAC 1 cut(s) 856
Hpy99I CGWCG 5 cut(s) 623, 641, 671, 674, 692
HpyAV CCTTC 4 cut(s) 130, 348, 469, 1131
HpyCH4III ACNGT 2 cut(s) 481, 982
HpyCH4IV ACGT 4 cut(s) 276, 291, 636, 756
HpyCH4V TGCA 1 cut(s) 766
HpyF10VI GCNNNNNNNGC 2 cut(s) 769, 1081
HpyF3I CTNAG 2 cut(s) 169, 1101
HpySE526I ACGT 4 cut(s) 276, 291, 636, 756
Hsp92I GRCGYC 5 cut(s) 276, 666, 699, 1082, 1106
Hsp92II CATG 4 cut(s) 568, 652, 812, 1236
HspAI GCGC 4 cut(s) 247, 270, 381, 699
KasI GGCGCC 1 cut(s) 698
Kzo9I GATC 5 cut(s) 172, 432, 615, 988, 1271
LmnI GCTCC 9 cut(s) 191, 404, 452, 777, 819, 893, 938, 1050, 1123
Lsp1109I GCAGC 2 cut(s) 750, 1183
LweI GCATC 3 cut(s) 339, 528, 668
MaeII ACGT 4 cut(s) 276, 291, 636, 756
MaeIII GTNAC 3 cut(s) 352, 970, 1063
MalI GATC 5 cut(s) 174, 434, 617, 990, 1273
MbiI CCGCTC 3 cut(s) 107, 186, 447
MboI GATC 5 cut(s) 172, 432, 615, 988, 1271
MboII GAAGA 4 cut(s) 157, 494, 706, 1149
MflI RGATCY 2 cut(s) 172, 1271
MhlI GDGCHC 4 cut(s) 816, 839, 1055, 1120
MlsI TGGCCA 1 cut(s) 1004
MluCI AATT 4 cut(s) 532, 677, 1132, 1255
MluNI TGGCCA 1 cut(s) 1004
Mly113I GGCGCC 1 cut(s) 699
MlyI GAGTC 2 cut(s) 493, 854
MmeI TCCRAC 4 cut(s) 159, 261, 342, 765
Mox20I TGGCCA 1 cut(s) 1004
MscI TGGCCA 1 cut(s) 1004
MseI TTAA 3 cut(s) 531, 1173, 1247
Msp20I TGGCCA 1 cut(s) 1004
Mva1269I GAATGC 1 cut(s) 1281
MvaI CCWGG 4 cut(s) 962, 1021, 1072, 1167
MvnI CGCG 5 cut(s) 247, 270, 272, 381, 417
MwoI GCNNNNNNNGC 2 cut(s) 769, 1081
NarI GGCGCC 1 cut(s) 699
NciI CCSGG 7 cut(s) 430, 580, 776, 860, 1058, 1077, 1078
NdeII GATC 5 cut(s) 172, 432, 615, 988, 1271
NlaIII CATG 4 cut(s) 568, 652, 812, 1236
NlaIV GGNNCC 5 cut(s) 400, 584, 700, 895, 934
NmuCI GTSAC 2 cut(s) 970, 1063
NruI TCGCGA 1 cut(s) 417
PaeR7I CTCGAG 2 cut(s) 299, 842
PceI AGGCCT 1 cut(s) 965
PcsI WCGNNNNNNNCGW 5 cut(s) 297, 678, 687, 723, 845
PctI GAATGC 1 cut(s) 1281
PfeI GAWTC 2 cut(s) 705, 954
PkrI GCNGC 8 cut(s) 160, 643, 658, 698, 765, 1164, 1198, 1280
PleI GAGTC 2 cut(s) 493, 853
PluTI GGCGCC 1 cut(s) 702
PpsI GAGTC 2 cut(s) 493, 853
PshAI GACNNNNGTC 1 cut(s) 1109
Psp6I CCWGG 4 cut(s) 960, 1019, 1070, 1165
PspEI GGTNACC 1 cut(s) 970
PspGI CCWGG 4 cut(s) 960, 1019, 1070, 1165
PspN4I GGNNCC 5 cut(s) 400, 584, 700, 895, 934
PspPI GGNCC 6 cut(s) 487, 582, 592, 610, 862, 1074
PspXI VCTCGAGB 2 cut(s) 299, 842
PsuI RGATCY 2 cut(s) 172, 1271
RruI TCGCGA 1 cut(s) 417
RsaI GTAC 1 cut(s) 305
RsaNI GTAC 1 cut(s) 304
SaqAI TTAA 3 cut(s) 531, 1173, 1247
SatI GCNGC 8 cut(s) 159, 642, 657, 697, 764, 1163, 1197, 1279
Sau3AI GATC 5 cut(s) 172, 432, 615, 988, 1271
Sau96I GGNCC 6 cut(s) 487, 582, 592, 610, 862, 1074
SchI GAGTC 2 cut(s) 493, 854
SduI GDGCHC 4 cut(s) 816, 839, 1055, 1120
SfaNI GCATC 3 cut(s) 339, 528, 668
SfcI CTRYAG 1 cut(s) 879
SfoI GGCGCC 1 cut(s) 700
Sfr274I CTCGAG 2 cut(s) 299, 842
SinI GGWCC 1 cut(s) 862
SlaI CTCGAG 2 cut(s) 299, 842
SmaI CCCGGG 1 cut(s) 1078
SmlI CTYRAG 2 cut(s) 299, 842
SmoI CTYRAG 2 cut(s) 299, 842
Sse9I AATT 4 cut(s) 532, 677, 1132, 1255
SseBI AGGCCT 1 cut(s) 965
SspDI GGCGCC 1 cut(s) 698
StuI AGGCCT 1 cut(s) 965
StyI CCWWGG 1 cut(s) 606
TaaI ACNGT 2 cut(s) 481, 982
TaiI ACGT 4 cut(s) 279, 294, 639, 759
TaqI TCGA 8 cut(s) 300, 558, 618, 672, 681, 843, 848, 987
TasI AATT 4 cut(s) 532, 677, 1132, 1255
TauI GCSGC 6 cut(s) 161, 644, 659, 699, 1165, 1281
TfiI GAWTC 2 cut(s) 705, 954
Tru1I TTAA 3 cut(s) 531, 1173, 1247
Tru9I TTAA 3 cut(s) 531, 1173, 1247
TscAI CASTG 4 cut(s) 379, 736, 798, 1120
TseFI GTSAC 2 cut(s) 970, 1063
TseI GCWGC 2 cut(s) 763, 1196
Tsp45I GTSAC 2 cut(s) 970, 1063
TspDTI ATGAA 1 cut(s) 1221
TspGWI ACGGA 4 cut(s) 391, 430, 517, 925
TspMI CCCGGG 1 cut(s) 1076
TspRI CASTG 4 cut(s) 379, 736, 798, 1120
VpaK11BI GGWCC 1 cut(s) 862
XapI RAATTY 1 cut(s) 677
XhoI CTCGAG 2 cut(s) 299, 842
XmaI CCCGGG 1 cut(s) 1076
ZraI GACGTC 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.