RchiOBHm_Chr5g0064411

Fasciclin-like arabinogalactan protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
70330990 .. 70332641
1652 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34039

Sequence Viewer

Length: 1263 bp
ATGGCCTTTACATCCCCAAATCCCCATTTTACCCCTACCCACTTCCTCTATTTCCTCCTCCTCCTCACTTCCTCTCTCCCCTTTACTCTTTCCATCAACATCACCGCTCTCCTCTCCCCCTTCCCCGACCTCTCCGACTTCACCTCCCTCCTCTCCGCCGCCATCTTCTCAGATCTCTCCCTCCGCTCCTCCCTCACCCTCCTCGCCGTCCCTAACCCTTTCCTCTCCTCCACCTCCGACCTCACGCGCCACCTCTCCCCCTCCTCACGCGCCGACGTCCTCCGCTACCACGTCCTCCTCGAGTACCTCTCCCTCTCCGACCTCGCCCGCATCCCCCCTTCGGGAAAACTCGTCACCACTCTCTACCAGACCACCGGACGCGCCACCAGCGACTTCGGCTCCGTCAATCTCACGCGCGACCCGACCACCGGGATCGTCTCCGTCCGCTCCCCCGCCACCTTCTCCCCCTCAAACGCCACCGTTTTGGGGCTCGTCAAGACTCTTCCCTACAATGTCAGCATCTTTTCCGTTAATTCCCTCCTTGTCCCTTACGGCTTCGACCTCATGGCCTCCGAGACCCGGCCCCCGCTGGGCCTCAACATCACCAAGGCCCTGATCGACGGCCACAACTTCAACGTCGCCGCCTCCATGCTCGCCGCATCCGGCGTCGTCGAGGAATTCGAGGCCGACGAGGGCGGCGCCGGAATCACTCTCTTCGTCCCTACTGACACTGCCTTCTCCGACCTCCCCGCAAACGTGAGGCTCCAATCTCTCCCGGCGGATAAGAAATCGGTGGTGTTGAAGTTCCATGTGCTCCACTCCTACTACCCATTGGGCTCGCTCGAGTCGATTGTGAACCCGGTCCAGCCCACATTGGCTACAGAGCTAGTGGGAGCCGGTAGCTACACTCTCAACATCAGCAGAAACAACGGCTCCGTTTCAATCAACACCGGAATCATCCAGGCCTCGGTGACCCAGACAGTGTTCGATCAAAAACCGGTGGCCATTTTCGGAGTTTCCAGGGTTTTGTTGCCGAAAGAGATTTTTGGGAGCACCCCGGCAGTAACATCCAGGCCCGGGACGCCAGTTTCCGGCGGGGCTGAGACGCCGGACAGTGCTCCGTCACCGGACAATTCGATGAGTGGGCAGGAACTCTCTTCGCCGCCCGGTTTTAAGGAGATAAAATCCGAGGGTGCTGCCATTACTGGGCTGTGGAGGTTGGGGGTTGCTTCATGTTGTATAGCATTGTATGTAATGGTATGA

Protein Analysis

420

Amino Acids

44.43

Weight (kDa)

5.64

Isoelectric Point (pI)

44.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 210 - 345 5.5e-18 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0015283)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 279
AccB1I GGYRCC 1 cut(s) 698
AccBSI CCGCTC 3 cut(s) 107, 186, 447
AccII CGCG 5 cut(s) 247, 270, 381, 415, 417
AclWI GGATC 1 cut(s) 440
AcoI YGGCCR 2 cut(s) 622, 1002
AcsI RAATTY 1 cut(s) 677
AcyI GRCGYC 5 cut(s) 276, 666, 699, 1082, 1106
AfaI GTAC 1 cut(s) 305
AgeI ACCGGT 1 cut(s) 997
AgsI TTSAA 3 cut(s) 634, 802, 942
AjiI CACGTC 1 cut(s) 292
AjnI CCWGG 3 cut(s) 960, 1019, 1070
AluBI AGCT 2 cut(s) 886, 903
AluI AGCT 2 cut(s) 886, 903
Alw21I GWGCWC 3 cut(s) 816, 1055, 1120
Alw26I GTCTC 3 cut(s) 442, 569, 1097
AlwI GGATC 1 cut(s) 440
Ama87I CYCGRG 3 cut(s) 299, 842, 1076
ApeKI GCWGC 1 cut(s) 1196
ApoI RAATTY 1 cut(s) 677
AsiGI ACCGGT 1 cut(s) 997
AspLEI GCGC 5 cut(s) 249, 272, 383, 417, 701
AspS9I GGNCC 5 cut(s) 582, 592, 610, 862, 1074
AsuC2I CCSGG 8 cut(s) 430, 580, 776, 860, 1058, 1077, 1078, 1167
AsuHPI GGTGA 7 cut(s) 94, 133, 187, 346, 595, 982, 1116
AvaI CYCGRG 3 cut(s) 299, 842, 1076
AvaII GGWCC 1 cut(s) 862
BalI TGGCCA 1 cut(s) 1004
BanI GGYRCC 1 cut(s) 698
BanII GRGCYC 2 cut(s) 492, 839
Bbv12I GWGCWC 3 cut(s) 816, 1055, 1120
BbvI GCAGC 1 cut(s) 1183
BccI CCATC 2 cut(s) 101, 170
BceAI ACGGC 4 cut(s) 191, 568, 637, 946
BcgI CGANNNNNNTGC 2 cut(s) 1178, 1212
BciT130I CCWGG 3 cut(s) 962, 1021, 1072
BcnI CCSGG 8 cut(s) 430, 580, 776, 860, 1058, 1077, 1078, 1167
BcoDI GTCTC 3 cut(s) 442, 569, 1097
BfaI CTAG 1 cut(s) 887
BfmI CTRYAG 1 cut(s) 879
BfoI RGCGCY 1 cut(s) 702
BglII AGATCT 1 cut(s) 172
BisI GCNGC 6 cut(s) 159, 642, 657, 697, 1163, 1197
BlsI GCNGC 6 cut(s) 160, 643, 658, 698, 1164, 1198
Bme18I GGWCC 1 cut(s) 862
BmeT110I CYCGRG 3 cut(s) 299, 842, 1076
BmgBI CACGTC 1 cut(s) 292
BmgT120I GGNCC 5 cut(s) 582, 592, 610, 862, 1074
BmiI GGNNCC 6 cut(s) 400, 584, 700, 764, 895, 934
BmrI ACTGGG 1 cut(s) 1215
BmsI GCATC 3 cut(s) 339, 528, 668
BmuI ACTGGG 1 cut(s) 1215
BplI GAGNNNNNCTC 2 cut(s) 293, 325
BpuMI CCSGG 8 cut(s) 430, 580, 776, 860, 1058, 1077, 1078, 1167
BsaHI GRCGYC 5 cut(s) 276, 666, 699, 1082, 1106
BsaI GGTCTC 1 cut(s) 569
BsaJI CCNNGG 6 cut(s) 606, 966, 1020, 1056, 1076, 1188
BsaWI WCCGGW 4 cut(s) 374, 950, 997, 1126
BsaXI ACNNNNNCTCC 6 cut(s) 128, 158, 383, 413, 917, 947
Bse118I RCCGGY 2 cut(s) 896, 997
Bse1I ACTGG 2 cut(s) 1085, 1210
BseBI CCWGG 3 cut(s) 962, 1021, 1072
BseDI CCNNGG 6 cut(s) 606, 966, 1020, 1056, 1076, 1188
BseGI GGATG 5 cut(s) 11, 330, 659, 957, 1067
BseMII CTCAG 2 cut(s) 183, 1092
BseNI ACTGG 2 cut(s) 1085, 1210
BseXI GCAGC 1 cut(s) 1183
BseYI CCCAGC 1 cut(s) 589
Bsh1236I CGCG 5 cut(s) 247, 270, 381, 415, 417
BshNI GGYRCC 1 cut(s) 698
BshTI ACCGGT 1 cut(s) 997
BsiHKAI GWGCWC 3 cut(s) 816, 1055, 1120
BsiHKCI CYCGRG 3 cut(s) 299, 842, 1076
BslFI GGGAC 4 cut(s) 194, 530, 704, 1093
BsmAI GTCTC 3 cut(s) 442, 569, 1097
BsmBI CGTCTC 2 cut(s) 442, 1097
BsmFI GGGAC 4 cut(s) 194, 530, 704, 1093
Bso31I GGTCTC 1 cut(s) 569
BsoBI CYCGRG 3 cut(s) 299, 842, 1076
Bsp1286I GDGCHC 5 cut(s) 492, 816, 839, 1055, 1120
Bsp143I GATC 4 cut(s) 172, 432, 615, 988
BspCNI CTCAG 2 cut(s) 182, 1093
BspFNI CGCG 5 cut(s) 247, 270, 381, 415, 417
BspLI GGNNCC 6 cut(s) 400, 584, 700, 764, 895, 934
BspPI GGATC 1 cut(s) 440
BspT107I GGYRCC 1 cut(s) 698
BspTNI GGTCTC 1 cut(s) 569
BsrBI CCGCTC 3 cut(s) 107, 186, 447
BsrFI RCCGGY 2 cut(s) 896, 997
BsrI ACTGG 2 cut(s) 1085, 1210
BssAI RCCGGY 2 cut(s) 896, 997
BssECI CCNNGG 6 cut(s) 606, 966, 1020, 1056, 1076, 1188
BssMI GATC 4 cut(s) 172, 432, 615, 988
BssNI GRCGYC 5 cut(s) 276, 666, 699, 1082, 1106
BssT1I CCWWGG 1 cut(s) 606
Bst2UI CCWGG 3 cut(s) 962, 1021, 1072
Bst4CI ACNGT 3 cut(s) 481, 982, 1115
Bst6I CTCTTC 3 cut(s) 507, 719, 1162
BstACI GRCGYC 5 cut(s) 276, 666, 699, 1082, 1106
BstC8I GCNNGC 3 cut(s) 328, 654, 839
BstDEI CTNAG 2 cut(s) 169, 1101
BstEII GGTNACC 1 cut(s) 970
BstF5I GGATG 5 cut(s) 11, 330, 659, 957, 1067
BstFNI CGCG 5 cut(s) 247, 270, 381, 415, 417
BstH2I RGCGCY 1 cut(s) 702
BstHHI GCGC 5 cut(s) 249, 272, 383, 417, 701
BstKTI GATC 4 cut(s) 175, 435, 618, 991
BstMAI GTCTC 3 cut(s) 442, 569, 1097
BstMBI GATC 4 cut(s) 172, 432, 615, 988
BstMWI GCNNNNNNNGC 3 cut(s) 387, 396, 1081
BstNI CCWGG 3 cut(s) 962, 1021, 1072
BstPI GGTNACC 1 cut(s) 970
BstSFI CTRYAG 1 cut(s) 879
BstUI CGCG 5 cut(s) 247, 270, 381, 415, 417
BstV1I GCAGC 1 cut(s) 1183
BstX2I RGATCY 1 cut(s) 172
BstXI CCANNNNNNTGG 1 cut(s) 484
BstYI RGATCY 1 cut(s) 172
BtrI CACGTC 1 cut(s) 292
BtsCI GGATG 5 cut(s) 11, 330, 659, 957, 1067
BtsI GCAGTG 1 cut(s) 729
BtsIMutI CAGTG 3 cut(s) 729, 987, 1120
Cac8I GCNNGC 3 cut(s) 328, 654, 839
CfoI GCGC 5 cut(s) 249, 272, 383, 417, 701
Cfr10I RCCGGY 2 cut(s) 896, 997
Cfr13I GGNCC 5 cut(s) 582, 592, 610, 862, 1074
Cfr9I CCCGGG 1 cut(s) 1076
CseI GACGC 4 cut(s) 387, 655, 1090, 1114
Csp6I GTAC 1 cut(s) 304
CspAI ACCGGT 1 cut(s) 997
CviAII CATG 4 cut(s) 565, 649, 809, 1233
CviQI GTAC 1 cut(s) 304
DdeI CTNAG 2 cut(s) 169, 1101
DinI GGCGCC 1 cut(s) 700
DpnI GATC 4 cut(s) 174, 434, 617, 990
DpnII GATC 4 cut(s) 172, 432, 615, 988
EaeI YGGCCR 2 cut(s) 622, 1002
Eam1104I CTCTTC 3 cut(s) 507, 719, 1162
EarI CTCTTC 3 cut(s) 507, 719, 1162
EciI GGCGGA 2 cut(s) 145, 794
Eco130I CCWWGG 1 cut(s) 606
Eco147I AGGCCT 1 cut(s) 965
Eco24I GRGCYC 2 cut(s) 492, 839
Eco31I GGTCTC 1 cut(s) 569
Eco47I GGWCC 1 cut(s) 862
Eco88I CYCGRG 3 cut(s) 299, 842, 1076
Eco91I GGTNACC 1 cut(s) 970
EcoO109I RGGNCCY 1 cut(s) 610
EcoO65I GGTNACC 1 cut(s) 970
EcoRI GAATTC 1 cut(s) 677
EcoRII CCWGG 3 cut(s) 960, 1019, 1070
EcoT14I CCWWGG 1 cut(s) 606
EcoT38I GRGCYC 2 cut(s) 492, 839
EgeI GGCGCC 1 cut(s) 700
EheI GGCGCC 1 cut(s) 700
ErhI CCWWGG 1 cut(s) 606
Esp3I CGTCTC 2 cut(s) 442, 1097
FaeI CATG 4 cut(s) 568, 652, 812, 1236
FaiI YATR 7 cut(s) 566, 650, 810, 1234, 1241, 1251, 1261
FaqI GGGAC 4 cut(s) 194, 530, 704, 1093
FatI CATG 4 cut(s) 564, 648, 808, 1232
FauI CCCGC 5 cut(s) 335, 460, 594, 757, 1088
Fnu4HI GCNGC 6 cut(s) 159, 642, 657, 697, 1163, 1197
FokI GGATG 4 cut(s) 317, 646, 944, 1054
FriOI GRGCYC 2 cut(s) 492, 839
Fsp4HI GCNGC 6 cut(s) 159, 642, 657, 697, 1163, 1197
FspBI CTAG 1 cut(s) 887
GlaI GCGC 5 cut(s) 248, 271, 382, 416, 700
GluI GCNGC 6 cut(s) 159, 642, 657, 697, 1163, 1197
GsaI CCCAGC 1 cut(s) 593
HaeII RGCGCY 1 cut(s) 702
HgaI GACGC 4 cut(s) 387, 655, 1090, 1114
HhaI GCGC 5 cut(s) 249, 272, 383, 417, 701
Hin1I GRCGYC 5 cut(s) 276, 666, 699, 1082, 1106
Hin1II CATG 4 cut(s) 568, 652, 812, 1236
Hin6I GCGC 5 cut(s) 247, 270, 381, 415, 699
HinP1I GCGC 5 cut(s) 247, 270, 381, 415, 699
HinfI GANTC 4 cut(s) 499, 705, 845, 954
HphI GGTGA 7 cut(s) 94, 133, 187, 346, 595, 982, 1116
Hpy166II GTNNAC 1 cut(s) 856
Hpy188I TCNGA 8 cut(s) 136, 172, 238, 319, 574, 742, 1013, 1189
Hpy188III TCNNGA 2 cut(s) 342, 496
Hpy8I GTNNAC 1 cut(s) 856
Hpy99I CGWCG 6 cut(s) 278, 623, 641, 671, 674, 692
HpyAV CCTTC 4 cut(s) 130, 348, 469, 745
HpyCH4III ACNGT 3 cut(s) 481, 982, 1115
HpyCH4IV ACGT 4 cut(s) 276, 291, 636, 756
HpyF10VI GCNNNNNNNGC 3 cut(s) 387, 396, 1081
HpyF3I CTNAG 2 cut(s) 169, 1101
HpySE526I ACGT 4 cut(s) 276, 291, 636, 756
Hsp92I GRCGYC 5 cut(s) 276, 666, 699, 1082, 1106
Hsp92II CATG 4 cut(s) 568, 652, 812, 1236
HspAI GCGC 5 cut(s) 247, 270, 381, 415, 699
KasI GGCGCC 1 cut(s) 698
Kzo9I GATC 4 cut(s) 172, 432, 615, 988
LmnI GCTCC 9 cut(s) 191, 404, 452, 768, 819, 893, 938, 1050, 1123
Lsp1109I GCAGC 1 cut(s) 1183
LweI GCATC 3 cut(s) 339, 528, 668
MaeI CTAG 1 cut(s) 887
MaeII ACGT 4 cut(s) 276, 291, 636, 756
MaeIII GTNAC 4 cut(s) 352, 970, 1063, 1122
MalI GATC 4 cut(s) 174, 434, 617, 990
MbiI CCGCTC 3 cut(s) 107, 186, 447
MboI GATC 4 cut(s) 172, 432, 615, 988
MboII GAAGA 4 cut(s) 157, 494, 706, 1149
MflI RGATCY 1 cut(s) 172
MhlI GDGCHC 5 cut(s) 492, 816, 839, 1055, 1120
MlsI TGGCCA 1 cut(s) 1004
MluCI AATT 3 cut(s) 532, 677, 1132
MluNI TGGCCA 1 cut(s) 1004
Mly113I GGCGCC 1 cut(s) 699
MlyI GAGTC 2 cut(s) 493, 854
MmeI TCCRAC 4 cut(s) 159, 261, 342, 765
Mox20I TGGCCA 1 cut(s) 1004
MscI TGGCCA 1 cut(s) 1004
MseI TTAA 2 cut(s) 531, 1173
Msp20I TGGCCA 1 cut(s) 1004
MspA1I CMGCKG 1 cut(s) 589
MvaI CCWGG 3 cut(s) 962, 1021, 1072
MvnI CGCG 5 cut(s) 247, 270, 381, 415, 417
MwoI GCNNNNNNNGC 3 cut(s) 387, 396, 1081
NarI GGCGCC 1 cut(s) 699
NciI CCSGG 8 cut(s) 430, 580, 776, 860, 1058, 1077, 1078, 1167
NdeII GATC 4 cut(s) 172, 432, 615, 988
NlaIII CATG 4 cut(s) 568, 652, 812, 1236
NlaIV GGNNCC 6 cut(s) 400, 584, 700, 764, 895, 934
NmuCI GTSAC 3 cut(s) 352, 970, 1122
PaeR7I CTCGAG 2 cut(s) 299, 842
PceI AGGCCT 1 cut(s) 965
PcsI WCGNNNNNNNCGW 5 cut(s) 297, 419, 678, 687, 845
PfeI GAWTC 2 cut(s) 705, 954
PinAI ACCGGT 1 cut(s) 997
PkrI GCNGC 6 cut(s) 160, 643, 658, 698, 1164, 1198
PleI GAGTC 2 cut(s) 493, 853
PluTI GGCGCC 1 cut(s) 702
PpsI GAGTC 2 cut(s) 493, 853
Psp6I CCWGG 3 cut(s) 960, 1019, 1070
PspEI GGTNACC 1 cut(s) 970
PspFI CCCAGC 1 cut(s) 589
PspGI CCWGG 3 cut(s) 960, 1019, 1070
PspN4I GGNNCC 6 cut(s) 400, 584, 700, 764, 895, 934
PspPI GGNCC 5 cut(s) 582, 592, 610, 862, 1074
PspXI VCTCGAGB 2 cut(s) 299, 842
PsuI RGATCY 1 cut(s) 172
RsaI GTAC 1 cut(s) 305
RsaNI GTAC 1 cut(s) 304
SaqAI TTAA 2 cut(s) 531, 1173
SatI GCNGC 6 cut(s) 159, 642, 657, 697, 1163, 1197
Sau3AI GATC 4 cut(s) 172, 432, 615, 988
Sau96I GGNCC 5 cut(s) 582, 592, 610, 862, 1074
SchI GAGTC 2 cut(s) 493, 854
SduI GDGCHC 5 cut(s) 492, 816, 839, 1055, 1120
SfaNI GCATC 3 cut(s) 339, 528, 668
SfcI CTRYAG 1 cut(s) 879
SfoI GGCGCC 1 cut(s) 700
Sfr274I CTCGAG 2 cut(s) 299, 842
SinI GGWCC 1 cut(s) 862
SlaI CTCGAG 2 cut(s) 299, 842
SmaI CCCGGG 1 cut(s) 1078
SmlI CTYRAG 2 cut(s) 299, 842
SmoI CTYRAG 2 cut(s) 299, 842
Sse9I AATT 3 cut(s) 532, 677, 1132
SseBI AGGCCT 1 cut(s) 965
SspDI GGCGCC 1 cut(s) 698
SspMI CTAG 1 cut(s) 887
StuI AGGCCT 1 cut(s) 965
StyI CCWWGG 1 cut(s) 606
TaaI ACNGT 3 cut(s) 481, 982, 1115
TaiI ACGT 4 cut(s) 279, 294, 639, 759
TaqI TCGA 9 cut(s) 300, 558, 618, 672, 681, 843, 848, 987, 1136
TasI AATT 3 cut(s) 532, 677, 1132
TauI GCSGC 5 cut(s) 161, 644, 659, 699, 1165
TfiI GAWTC 2 cut(s) 705, 954
Tru1I TTAA 2 cut(s) 531, 1173
Tru9I TTAA 2 cut(s) 531, 1173
TscAI CASTG 3 cut(s) 736, 987, 1120
TseFI GTSAC 3 cut(s) 352, 970, 1122
TseI GCWGC 1 cut(s) 1196
Tsp45I GTSAC 3 cut(s) 352, 970, 1122
TspDTI ATGAA 1 cut(s) 1221
TspGWI ACGGA 5 cut(s) 391, 430, 517, 925, 1110
TspMI CCCGGG 1 cut(s) 1076
TspRI CASTG 3 cut(s) 736, 987, 1120
VpaK11BI GGWCC 1 cut(s) 862
XapI RAATTY 1 cut(s) 677
XhoI CTCGAG 2 cut(s) 299, 842
XmaI CCCGGG 1 cut(s) 1076
XspI CTAG 1 cut(s) 887
ZraI GACGTC 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.