Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0015283

Physical Location & Seq

Genomic Coordinates Forward (+)

48459061 .. 48467732

Gene Structure 8672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0364400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3330 bp

ATGTCGCGGACGGAGAGGATGGCTTCTGATCTTAGCAGGACCACCGGTCCGGTCGAAAGAGACATCGAGCAGGCCATTACTGCTTTAAAGAAAGGAGCATACTTGCTCAAGTACGGAAGAAGGGGAAAGCCCAAGTTCTGCCCCTTCCGCCTTTCTAATGATGAGTCCATTCTAATATGGTTCTCAGGGAAGGAGGAAAAACAACTTAAACTAAGCCATGTTTCTAGAATTATATCCGGGCAACGCACTCCAATCTTTCAGAGGTATCCACGGCCTGAAAAGGAGTATCAGTCATTTTCTCTTATATATAATGATAGATCACTGGATTTGATTTGCAAGGATAAAGATGAAGCTGAGGTATGGTTCAGTGGTTTAAAAGCATTAATATCACGCAGCCACCATCGAAAATGGAGAACAGAGTCAAGGAGCGATGGAATTCCATCTGAAGCAAATAGTCCGAGAACTTATACACGGAGAAGTTCTCCTCTGAATTCTCCATTTGGGAGTAATGATAGCTTACAGAAGGATGGTGCAGATCACCTTCGCCTTCATAGTCCATTTGAAAGTCCTCCTAAAAATGGTCTGGATAAGGCACTATCAGATGTGATACTATATGCTGTCCCTCCCAAGGGTTTTTTCCCTTCAGATTCAGCTAGTGGTTCAGTACATTCTGTGTCATCAGGAGGCTCGGAAAGTGTACACGGTCAGATGAAGGCAATGGCAATGGATGCATTTAGAGTTAGTCTATCCAGTGCTGTTAGCTCATCAAGCCAAGGTTCTGGTCATGATGATGGTGATGCCTTAGGAGATGTTTTCATTTGGGGGGAAGGCACAGGAGATGGTGTTGTTGGTGGTGGTTCTCATAGAGTTGGAAGTAGTTTTGCTGCCAAAATGGATTCTTTATTGCCTAAACCTTTAGAATCTGCAGTGGTACTCGACGTCCAAAACATTGCCTGTGGTGGACGACATGCAGCTCTAGTAACCAAGCAAGGAGAGATTTTTTCTTGGGGAGAGGAATCTGGGGGTAGGCTTGGGCATGGTGTAGATGTTGATGTTTTGCATCCAAAGCTTATTGATGCCCTCAGTAATGTGAACATTGAGCTTGTTGCTTGTGGTGAGTACCATACAAGTGCTGTTACCTTTTCCGGTGATCTGTACACATGGGGTGATGGCACTTACAATTTTGGTCTACTTGGGCATGGAAATGAAGTGAGTCACTGGGTTCCCAAAAGAGTAAATGGGCCCTTGGAGGGTATACATGTCTCATCTATATCTTGTGGACCCTGGCACACAGCTGTTGTAACCTCTGCCGGGCAATTGTTTACTTTTGGTGATGGCACATTTGGTGTTCTGGGACATGGAGATAGGAAAAGTGTTTCAATTCCCAGGGAAGTGGAATCCCTTAAGGGTCTTCGCACTGTGCAAGCAGCTTGTGGGGTGTGGCATACTGCTGCTGTTATAGAAGTCATGGTTGGCAATTCAAGTTCGAGCAACTGTTCTTTAGGAAAGTTGTTCACCTGGGGAGATGGCGATAAAGGTCGGCTTGGGCATGGTGACAAGGAAGCAAAACTTGTGCCTACCTGTGTTGCAGCTCTTGTCGATCCCAACTTTTGTCAAGTTGCTTGTGGACATAGTATGACAGTTGCTCTTACTACATCTGGCCATGTATACACAATGGGCAGTCCTGTTTATGGCCAGTTAGGAAACCCTCAAGCTGATGGAAAGCTCCCCAGTCGGGTCGAGGGAAAGCTCTTCAAGAGTTTTGTGGAAGAAATTTCTTGTGGTGCCTATCATGTTGCAGTTTTAACTTCAAGAACTGAGGTTTATACCTGGGGAAAAGGAGCAAATGGTCGTTTAGGTCATGGGAACATTGATGATCGTAATTCTCCCACATTAGTTGAAGCTCTGAAAGATAAGCAAGTCAAAAGTATTGCCTGTGGTGCTAATTTTACTGCAGCTATCTGCCTTCATAAATGGGTTTCTGGAGTTGATCAATCAATGTGTTCAGGCTGCCGCCTTCCGTTCAATTTTAAAAGAAAACGCCATAATTGTTATAATTGTGGTCTTGTTTTCTGTCATTCTTGCAGCAGTAAGAAGTCACTCAAGGCTTCTATGGCACCAAATCCCAACAAACCGTATCGTGTCTGTGACAATTGTTTTAGTAAACTGAGAAAAGCTATAGAAACTGATTATTCATCCCAGTCTTCTGTGAGCAGAAGAGGAAGTATCAATCAGGGCTCAAGTGACAGCATTGATAAAGACGATAAATTGGATTCCAGATCTCGTGTGCAACTTGCTAGATTTTCTTCTATGGAATCTCTGAAGAATGTGGAAACACGTTCTTCAAAGAAAAATAAGAAACTAGAATTCAATAGTAGTCGAGTCTCGCCTGTTCCAAATGGAGGTTCGCAGTGGGGAGCTCTTAATATTTCTAAATCATTTAATCCAGTATTTGGGTCATCCAAGAAGTTCTTCTCTGCTTCTGTTCCTGGATCCAGAATTGTTTCTAGAGCAACATCCCCCATTTCTAGGCGCCCCAGCCCACCTCGTTCTACAACACCAACTCCAACTCTAGGAGGACTTACATCACCAAAGATTGCTGTAGATGATAGTGCTAAAAGGACCAATGAAAGCCTTAGCCAGGAGGTTATCAAGCTAAGAGCACAGGTTGAAAGTCTTGCTCGAAAATCCCAACTACAGGAAGTGGAGCTGGAAAGAACAACTAAACAGCTGAAAGATGCAATAGCAATTGCAGATGCAGAGGCTGCAAAATGCAAAGCCGCAAAGGAAGTAATCCAGTCACTGACTGCACAATTGAAGGACATGGCTGAAAGACTGCCTGTTGGAGCAGCACGGAATATCAAATCACTCTCTCTTGCTTCTTTGGGTTCTGATCCTCCCAATGAAGTTTCTGGTGCTTCTATTGATCAATTGAATGGTCAAGCAACATGCCAAGGACCAGACTCCAATGGATCAAACAGCCAGTTGCTTTCTAATGGGTCCAGTACCACCAGTAACCGCAGTTCAGGTCACAACAAACAGGGGAATTCAGACTTGGCGACTAGAAATGGGAACAGAACCAAAGAAAGTGAATCTTGTAATGAGACTGAATGGGTTGAGCAAGACGAGCCTGGTGTATATATTACACTTACTTCCCTACCAGGAGGTGTCAAGGATCTCAAGAGAGTTCGCTTCAGTCGTAAGCGATTTAGTGAGAAACAAGCAGAACAGTGGTGGGCAGAGAACCGGGCAAGAGTATATGAACAATACAATGTGCGTATGGTAGACAAGTCTAGTGTAGGTGTTGGGAGTGTAGACTTGGCTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001871 GO:0003006 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006970 GO:0007155 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009651 GO:0009791 GO:0009825 GO:0009897 GO:0009986 GO:0009987 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0016020 GO:0016049 GO:0022414 GO:0022610 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0040007 GO:0044237 GO:0044249 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0048316 GO:0048354 GO:0048359 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071944 GO:0098552

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

1109

Amino Acids

119.82

Weight (kDa)

9.1

Isoelectric Point (pI)

44.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PH_12	PF16457	23 - 129	3.5e-09	Pleckstrin homology domain
WD40_RLD	PF25390	270 - 653	7.3e-80	RCC1-like domain
RCC1	PF00415	330 - 379	6.9e-12	Regulator of chromosome condensation (RCC1) repeat
RCC1_2	PF13540	368 - 393	1e-05	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	382 - 434	5.4e-11	Regulator of chromosome condensation (RCC1) repeat
RCC1_2	PF13540	421 - 449	8e-06	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	438 - 486	1.3e-14	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	502 - 550	7.1e-14	Regulator of chromosome condensation (RCC1) repeat
RCC1_2	PF13540	538 - 566	7.6e-06	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	553 - 602	6.5e-08	Regulator of chromosome condensation (RCC1) repeat
RCC1	PF00415	607 - 654	4.2e-15	Regulator of chromosome condensation (RCC1) repeat
FYVE	PF01363	658 - 724	1.8e-15	FYVE zinc finger
BRX_N	PF13713	921 - 955	6.6e-15	Transcription factor BRX N-terminal domain
BRX_assoc	PF16627	961 - 1029	8.2e-25	Unstructured region between BRX_N and BRX domain
BRX	PF08381	1035 - 1090	1.5e-29	Transcription factor regulating root and shoot growth via Pin3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46550
fragaria_vesca	FvH4_3g36000
malus_domestica	MD11G1109900.v1.1
prunus_persica	Prupe.6G078300_v2.0.a1
pyrus_communis	pycom03g07740 pycom11g09060
rosa_chinensis	RchiOBHm_Chr5g0064411
rosa_laevigata	RLG00000035721
rosa_multiflora	Rmu_sc0001367.1_g000002 Rmu_sc0028469.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016600
rosa_rugosa	Rorug05G0364400
rosa_samantha	Rh5AG422900 Rh5BG438600 Rh5CG461300 Rh5DG451800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2055
AatII	GACGTC	1 cut(s)	942
AccB1I	GGYRCC	3 cut(s)	1784, 2116, 2532
AccB7I	CCANNNNNTGG	1 cut(s)	2453
AccI	GTMKAC	5 cut(s)	1189, 1255, 1668, 3285, 3315
AccII	CGCG	1 cut(s)	7
AciI	CCGC	5 cut(s)	7, 148, 2014, 2781, 3019
AclWI	GGATC	6 cut(s)	1595, 2487, 2500, 2888, 2980, 3183
AcoI	YGGCCR	2 cut(s)	1660, 1693
AcsI	RAATTY	5 cut(s)	435, 490, 1773, 2366, 3046
AcuI	CTGAAG	4 cut(s)	465, 627, 2342, 3178
AcyI	GRCGYC	2 cut(s)	939, 2533
AfaI	GTAC	7 cut(s)	113, 666, 699, 933, 1121, 1157, 3007
AflII	CTTAAG	1 cut(s)	1403
AflIII	ACRYGT	2 cut(s)	1258, 2336
AgeI	ACCGGT	1 cut(s)	44
AhdI	GACNNNNNGTC	1 cut(s)	45
AjnI	CCWGG	8 cut(s)	1283, 1385, 1517, 1829, 2488, 2640, 3130, 3160
Alw21I	GWGCWC	2 cut(s)	2422, 2665
Alw26I	GTCTC	4 cut(s)	54, 1267, 2389, 3098
AlwI	GGATC	6 cut(s)	1595, 2487, 2500, 2888, 2980, 3183
AlwNI	CAGNNNCTG	2 cut(s)	2765, 2803
AoxI	GGCC	5 cut(s)	72, 272, 1241, 1660, 1693
ApaI	GGGCCC	1 cut(s)	1245
ApoI	RAATTY	5 cut(s)	435, 490, 1773, 2366, 3046
AseI	ATTAAT	1 cut(s)	383
AsiGI	ACCGGT	1 cut(s)	44
Asp700I	GAANNNNTTC	2 cut(s)	2471, 2503
AspLEI	GCGC	1 cut(s)	2535
AspS9I	GGNCC	8 cut(s)	39, 47, 1241, 1242, 1280, 2622, 2957, 3000
AsuC2I	CCSGG	3 cut(s)	238, 1312, 3248
AsuHPI	GGTGA	9 cut(s)	530, 806, 1127, 1160, 1178, 1343, 1507, 1565, 2580
AvaII	GGWCC	6 cut(s)	39, 47, 1280, 2622, 2957, 3000
AxyI	CCTNAGG	1 cut(s)	802
BaeGI	GKGCMC	1 cut(s)	1245
BalI	TGGCCA	2 cut(s)	1662, 1695
BamHI	GGATCC	1 cut(s)	2492
BanI	GGYRCC	3 cut(s)	1784, 2116, 2532
BanII	GRGCYC	3 cut(s)	1245, 2240, 2422
BauI	CACGAG	1 cut(s)	2283
BbsI	GAAGAC	2 cut(s)	1403, 2196
Bbv12I	GWGCWC	2 cut(s)	2422, 2665
BbvCI	CCTCAGC	1 cut(s)	354
BceAI	ACGGC	1 cut(s)	287
BciT130I	CCWGG	8 cut(s)	1285, 1387, 1519, 1831, 2490, 2642, 3132, 3162
BciVI	GTATCC	1 cut(s)	276
BclI	TGATCA	2 cut(s)	1990, 2926
BcnI	CCSGG	3 cut(s)	238, 1312, 3248
BcoDI	GTCTC	4 cut(s)	54, 1267, 2389, 3098
BfmI	CTRYAG	5 cut(s)	924, 1953, 2178, 2601, 2696
BfoI	RGCGCY	1 cut(s)	2536
BfrI	CTTAAG	1 cut(s)	1403
BfuI	GTATCC	1 cut(s)	276
BglII	AGATCT	1 cut(s)	2279
Bme18I	GGWCC	6 cut(s)	39, 47, 1280, 2622, 2957, 3000
BmeRI	GACNNNNNGTC	1 cut(s)	45
BmgT120I	GGNCC	8 cut(s)	39, 47, 1241, 1242, 1280, 2622, 2957, 3000
BmiI	GGNNCC	8 cut(s)	1224, 1243, 1282, 1786, 2118, 2494, 2534, 3001
BmrI	ACTGGG	3 cut(s)	1228, 1725, 2194
BmsI	GCATC	6 cut(s)	718, 787, 1066, 1069, 2728, 2746
BmuI	ACTGGG	3 cut(s)	1228, 1725, 2194
BpiI	GAAGAC	2 cut(s)	1403, 2196
BplI	GAGNNNNNCTC	2 cut(s)	466, 498
BpmI	CTGGAG	1 cut(s)	2004
Bpu10I	CCTNAGC	2 cut(s)	354, 2636
BpuEI	CTTGAG	5 cut(s)	92, 1695, 2087, 2224, 3164
BpuMI	CCSGG	3 cut(s)	238, 1312, 3248
BsaHI	GRCGYC	2 cut(s)	939, 2533
BsaWI	WCCGGW	3 cut(s)	44, 49, 1145
BsaXI	ACNNNNNCTCC	6 cut(s)	275, 305, 828, 858, 2548, 2578
Bse118I	RCCGGY	1 cut(s)	44
Bse21I	CCTNAGG	1 cut(s)	802
Bse3DI	GCAATG	3 cut(s)	723, 729, 948
BseBI	CCWGG	8 cut(s)	1285, 1387, 1519, 1831, 2490, 2642, 3132, 3162
BseGI	GGATG	7 cut(s)	24, 532, 733, 1060, 2195, 2459, 2516
BseMI	GCAATG	3 cut(s)	723, 729, 948
BseMII	CTCAG	5 cut(s)	198, 345, 1096, 1809, 2159
BseRI	GAGGAG	1 cut(s)	474
BseSI	GKGCMC	1 cut(s)	1245
BseYI	CCCAGC	1 cut(s)	2537
BsgI	GTGCAG	2 cut(s)	552, 2793
Bsh1236I	CGCG	1 cut(s)	7
Bsh1285I	CGRYCG	1 cut(s)	54
BshFI	GGCC	5 cut(s)	74, 274, 1243, 1662, 1695
BshNI	GGYRCC	3 cut(s)	1784, 2116, 2532
BshTI	ACCGGT	1 cut(s)	44
BsiEI	CGRYCG	1 cut(s)	54
BsiHKAI	GWGCWC	2 cut(s)	2422, 2665
BsiSI	CCGG	6 cut(s)	45, 50, 237, 1146, 1311, 3247
BslFI	GGGAC	2 cut(s)	605, 1368
BsmAI	GTCTC	4 cut(s)	54, 1267, 2389, 3098
BsmFI	GGGAC	2 cut(s)	605, 1368
BsnI	GGCC	5 cut(s)	74, 274, 1243, 1662, 1695
Bsp120I	GGGCCC	1 cut(s)	1241
Bsp1286I	GDGCHC	4 cut(s)	1245, 2240, 2422, 2665
Bsp1407I	TGTACA	2 cut(s)	697, 1155
BspACI	CCGC	5 cut(s)	7, 148, 2014, 2781, 3019
BspANI	GGCC	5 cut(s)	74, 274, 1243, 1662, 1695
BspCNI	CTCAG	5 cut(s)	197, 346, 1095, 1810, 2160
BspFNI	CGCG	1 cut(s)	7
BspHI	TCATGA	1 cut(s)	784
BspLI	GGNNCC	8 cut(s)	1224, 1243, 1282, 1786, 2118, 2494, 2534, 3001
BspMAI	CTGCAG	2 cut(s)	928, 1957
BspPI	GGATC	6 cut(s)	1595, 2487, 2500, 2888, 2980, 3183
BspQI	GCTCTTC	1 cut(s)	1757
BspT107I	GGYRCC	3 cut(s)	1784, 2116, 2532
BspTI	CTTAAG	1 cut(s)	1403
BsrDI	GCAATG	3 cut(s)	723, 729, 948
BsrFI	RCCGGY	1 cut(s)	44
BsrGI	TGTACA	2 cut(s)	697, 1155
BssAI	RCCGGY	1 cut(s)	44
BssNAI	GTATAC	2 cut(s)	1256, 1669
BssNI	GRCGYC	2 cut(s)	939, 2533
BssSI	CACGAG	1 cut(s)	2283
BssT1I	CCWWGG	4 cut(s)	627, 772, 1245, 2953
Bst1107I	GTATAC	2 cut(s)	1256, 1669
Bst2BI	CACGAG	1 cut(s)	2283
Bst2UI	CCWGG	8 cut(s)	1285, 1387, 1519, 1831, 2490, 2642, 3132, 3162
Bst4CI	ACNGT	6 cut(s)	704, 1420, 1496, 1642, 2136, 3231
Bst6I	CTCTTC	2 cut(s)	1757, 2212
BstACI	GRCGYC	2 cut(s)	939, 2533
BstAFI	CTTAAG	1 cut(s)	1403
BstAPI	GCANNNNNTGC	2 cut(s)	728, 2765
BstAUI	TGTACA	2 cut(s)	697, 1155
BstC8I	GCNNGC	2 cut(s)	72, 1425
BstDSI	CCRYGG	1 cut(s)	269
BstENI	CCTNNNNNAGG	1 cut(s)	2639
BstF5I	GGATG	7 cut(s)	24, 532, 733, 1060, 2195, 2459, 2516
BstFNI	CGCG	1 cut(s)	7
BstH2I	RGCGCY	1 cut(s)	2536
BstHHI	GCGC	1 cut(s)	2535
BstMAI	GTCTC	4 cut(s)	54, 1267, 2389, 3098
BstMCI	CGRYCG	1 cut(s)	54
BstMWI	GCNNNNNNNGC	9 cut(s)	80, 147, 728, 768, 1066, 1940, 2114, 2765, 3127
BstNI	CCWGG	8 cut(s)	1285, 1387, 1519, 1831, 2490, 2642, 3132, 3162
BstNSI	RCATGY	3 cut(s)	971, 1262, 2952
BstSFI	CTRYAG	5 cut(s)	924, 1953, 2178, 2601, 2696
BstSLI	GKGCMC	1 cut(s)	1245
BstUI	CGCG	1 cut(s)	7
BstV2I	GAAGAC	2 cut(s)	1403, 2196
BstX2I	RGATCY	3 cut(s)	2279, 2492, 3175
BstXI	CCANNNNNNTGG	2 cut(s)	779, 1393
BstYI	RGATCY	3 cut(s)	2279, 2492, 3175
BstZ17I	GTATAC	2 cut(s)	1256, 1669
Bsu36I	CCTNAGG	1 cut(s)	802
BsuI	GTATCC	1 cut(s)	276
BsuRI	GGCC	5 cut(s)	74, 274, 1243, 1662, 1695
BtgI	CCRYGG	1 cut(s)	269
BtgZI	GCGATG	1 cut(s)	444
BtsCI	GGATG	7 cut(s)	24, 532, 733, 1060, 2195, 2459, 2516
BtsI	GCAGTG	2 cut(s)	933, 2417
Cac8I	GCNNGC	2 cut(s)	72, 1425
CaiI	CAGNNNCTG	2 cut(s)	2765, 2803
CciI	TCATGA	1 cut(s)	784
CfoI	GCGC	1 cut(s)	2535
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	8 cut(s)	39, 47, 1241, 1242, 1280, 2622, 2957, 3000
CpoI	CGGWCCG	1 cut(s)	47
Csp6I	GTAC	7 cut(s)	112, 665, 698, 932, 1120, 1156, 3006
CspAI	ACCGGT	1 cut(s)	44
CspCI	CAANNNNNGTGG	2 cut(s)	1879, 1914
CspI	CGGWCCG	1 cut(s)	47
CviQI	GTAC	7 cut(s)	112, 665, 698, 932, 1120, 1156, 3006
DinI	GGCGCC	1 cut(s)	2534
DraI	TTTAAA	3 cut(s)	87, 375, 2032
DriI	GACNNNNNGTC	1 cut(s)	45
EaeI	YGGCCR	2 cut(s)	1660, 1693
Eam1104I	CTCTTC	2 cut(s)	1757, 2212
Eam1105I	GACNNNNNGTC	1 cut(s)	45
EarI	CTCTTC	2 cut(s)	1757, 2212
EciI	GGCGGA	1 cut(s)	137
Ecl136II	GAGCTC	1 cut(s)	2420
Eco130I	CCWWGG	4 cut(s)	627, 772, 1245, 2953
Eco24I	GRGCYC	3 cut(s)	1245, 2240, 2422
Eco47I	GGWCC	6 cut(s)	39, 47, 1280, 2622, 2957, 3000
Eco53kI	GAGCTC	1 cut(s)	2420
Eco57I	CTGAAG	4 cut(s)	465, 627, 2342, 3178
Eco81I	CCTNAGG	1 cut(s)	802
EcoICRI	GAGCTC	1 cut(s)	2420
EcoNI	CCTNNNNNAGG	1 cut(s)	2639
EcoO109I	RGGNCCY	1 cut(s)	1242
EcoRI	GAATTC	4 cut(s)	435, 490, 2366, 3046
EcoRII	CCWGG	8 cut(s)	1283, 1385, 1517, 1829, 2488, 2640, 3130, 3160
EcoT14I	CCWWGG	4 cut(s)	627, 772, 1245, 2953
EcoT22I	ATGCAT	1 cut(s)	733
EcoT38I	GRGCYC	3 cut(s)	1245, 2240, 2422
EgeI	GGCGCC	1 cut(s)	2534
EheI	GGCGCC	1 cut(s)	2534
ErhI	CCWWGG	4 cut(s)	627, 772, 1245, 2953
FalI	AAGNNNNNCTT	8 cut(s)	1527, 1559, 1554, 1586, 2456, 2488, 3079, 3111
FaqI	GGGAC	2 cut(s)	605, 1368
FbaI	TGATCA	2 cut(s)	1990, 2926
FblI	GTMKAC	5 cut(s)	1189, 1255, 1668, 3285, 3315
FokI	GGATG	7 cut(s)	31, 539, 740, 1047, 2182, 2446, 2503
FriOI	GRGCYC	3 cut(s)	1245, 2240, 2422
GlaI	GCGC	1 cut(s)	2534
GsaI	CCCAGC	1 cut(s)	2541
GsuI	CTGGAG	1 cut(s)	2004
HaeII	RGCGCY	1 cut(s)	2536
HaeIII	GGCC	5 cut(s)	74, 274, 1243, 1662, 1695
HapII	CCGG	6 cut(s)	45, 50, 237, 1146, 1311, 3247
HhaI	GCGC	1 cut(s)	2535
Hin1I	GRCGYC	2 cut(s)	939, 2533
Hin6I	GCGC	1 cut(s)	2533
HinP1I	GCGC	1 cut(s)	2533
HindIII	AAGCTT	1 cut(s)	1067
HpaII	CCGG	6 cut(s)	45, 50, 237, 1146, 1311, 3247
HphI	GGTGA	9 cut(s)	530, 806, 1127, 1160, 1178, 1343, 1507, 1565, 2580
Hpy99I	CGWCG	1 cut(s)	941
HpyCH4III	ACNGT	6 cut(s)	704, 1420, 1496, 1642, 2136, 3231
HpyCH4IV	ACGT	2 cut(s)	939, 2338
HpyF10VI	GCNNNNNNNGC	9 cut(s)	80, 147, 728, 768, 1066, 1940, 2114, 2765, 3127
HpySE526I	ACGT	2 cut(s)	939, 2338
Hsp92I	GRCGYC	2 cut(s)	939, 2533
HspAI	GCGC	1 cut(s)	2533
KasI	GGCGCC	1 cut(s)	2532
Ksp22I	TGATCA	2 cut(s)	1990, 2926
LguI	GCTCTTC	1 cut(s)	1757
LmnI	GCTCC	7 cut(s)	95, 426, 1731, 1841, 2417, 2707, 2846
LweI	GCATC	6 cut(s)	718, 787, 1066, 1069, 2728, 2746
MaeII	ACGT	2 cut(s)	939, 2338
MfeI	CAATTG	5 cut(s)	1316, 2152, 2748, 2813, 2930
MflI	RGATCY	3 cut(s)	2279, 2492, 3175
MhlI	GDGCHC	4 cut(s)	1245, 2240, 2422, 2665
MlsI	TGGCCA	2 cut(s)	1662, 1695
MluNI	TGGCCA	2 cut(s)	1662, 1695
Mly113I	GGCGCC	1 cut(s)	2533
MlyI	GAGTC	5 cut(s)	173, 428, 1222, 2391, 2957
MmeI	TCCRAC	3 cut(s)	850, 2591, 2824
Mox20I	TGGCCA	2 cut(s)	1662, 1695
Mph1103I	ATGCAT	1 cut(s)	733
MroXI	GAANNNNTTC	2 cut(s)	2471, 2503
MscI	TGGCCA	2 cut(s)	1662, 1695
MseI	TTAA	9 cut(s)	86, 207, 374, 383, 1404, 1805, 2031, 2424, 2442
MslI	CAYNNNNRTG	3 cut(s)	789, 1128, 1203
Msp20I	TGGCCA	2 cut(s)	1662, 1695
MspA1I	CMGCKG	2 cut(s)	1295, 2731
MspCI	CTTAAG	1 cut(s)	1403
MspI	CCGG	6 cut(s)	45, 50, 237, 1146, 1311, 3247
MunI	CAATTG	5 cut(s)	1316, 2152, 2748, 2813, 2930
MvaI	CCWGG	8 cut(s)	1285, 1387, 1519, 1831, 2490, 2642, 3132, 3162
MvnI	CGCG	1 cut(s)	7
MwoI	GCNNNNNNNGC	9 cut(s)	80, 147, 728, 768, 1066, 1940, 2114, 2765, 3127
NarI	GGCGCC	1 cut(s)	2533
NciI	CCSGG	3 cut(s)	238, 1312, 3248
NlaIV	GGNNCC	8 cut(s)	1224, 1243, 1282, 1786, 2118, 2494, 2534, 3001
NmuCI	GTSAC	7 cut(s)	1214, 1553, 2097, 2147, 2243, 2799, 3029
NsiI	ATGCAT	1 cut(s)	733
NspI	RCATGY	3 cut(s)	971, 1262, 2952
PagI	TCATGA	1 cut(s)	784
PasI	CCCWGGG	1 cut(s)	1386
PciI	ACATGT	1 cut(s)	1258
PciSI	GCTCTTC	1 cut(s)	1757
PcsI	WCGNNNNNNNCGW	1 cut(s)	3196
PdmI	GAANNNNTTC	2 cut(s)	2471, 2503
PfeI	GAWTC	8 cut(s)	647, 896, 920, 1016, 1397, 2273, 2315, 3092
PflMI	CCANNNNNTGG	1 cut(s)	2453
PfoI	TCCNGGA	1 cut(s)	2488
PinAI	ACCGGT	1 cut(s)	44
PleI	GAGTC	5 cut(s)	172, 427, 1221, 2390, 2957
PluTI	GGCGCC	1 cut(s)	2536
PpsI	GAGTC	5 cut(s)	172, 427, 1221, 2390, 2957
PscI	ACATGT	1 cut(s)	1258
PshBI	ATTAAT	1 cut(s)	383
PsiI	TTATAA	1 cut(s)	2055
Psp124BI	GAGCTC	1 cut(s)	2422
Psp6I	CCWGG	8 cut(s)	1283, 1385, 1517, 1829, 2488, 2640, 3130, 3160
PspFI	CCCAGC	1 cut(s)	2537
PspGI	CCWGG	8 cut(s)	1283, 1385, 1517, 1829, 2488, 2640, 3130, 3160
PspN4I	GGNNCC	8 cut(s)	1224, 1243, 1282, 1786, 2118, 2494, 2534, 3001
PspOMI	GGGCCC	1 cut(s)	1241
PspPI	GGNCC	8 cut(s)	39, 47, 1241, 1242, 1280, 2622, 2957, 3000
PsrI	GAACNNNNNNTAC	2 cut(s)	3007, 3039
PstI	CTGCAG	2 cut(s)	928, 1957
PstNI	CAGNNNCTG	2 cut(s)	2765, 2803
PsuI	RGATCY	3 cut(s)	2279, 2492, 3175
PvuII	CAGCTG	2 cut(s)	1295, 2731
RsaI	GTAC	7 cut(s)	113, 666, 699, 933, 1121, 1157, 3007
RsaNI	GTAC	7 cut(s)	112, 665, 698, 932, 1120, 1156, 3006
RseI	CAYNNNNRTG	3 cut(s)	789, 1128, 1203
Rsr2I	CGGWCCG	1 cut(s)	47
RsrII	CGGWCCG	1 cut(s)	47
SacI	GAGCTC	1 cut(s)	2422
SapI	GCTCTTC	1 cut(s)	1757
SaqAI	TTAA	9 cut(s)	86, 207, 374, 383, 1404, 1805, 2031, 2424, 2442
Sau96I	GGNCC	8 cut(s)	39, 47, 1241, 1242, 1280, 2622, 2957, 3000
SchI	GAGTC	5 cut(s)	173, 428, 1222, 2391, 2957
SduI	GDGCHC	4 cut(s)	1245, 2240, 2422, 2665
SfaNI	GCATC	6 cut(s)	718, 787, 1066, 1069, 2728, 2746
SfcI	CTRYAG	5 cut(s)	924, 1953, 2178, 2601, 2696
SfoI	GGCGCC	1 cut(s)	2534
SinI	GGWCC	6 cut(s)	39, 47, 1280, 2622, 2957, 3000
SmiMI	CAYNNNNRTG	3 cut(s)	789, 1128, 1203
SmlI	CTYRAG	6 cut(s)	107, 1403, 1710, 2102, 2239, 3179
SmoI	CTYRAG	6 cut(s)	107, 1403, 1710, 2102, 2239, 3179
SsiI	CCGC	5 cut(s)	7, 148, 2014, 2781, 3019
SspDI	GGCGCC	1 cut(s)	2532
SspI	AATATT	1 cut(s)	2428
SstI	GAGCTC	1 cut(s)	2422
StyI	CCWWGG	4 cut(s)	627, 772, 1245, 2953
TaaI	ACNGT	6 cut(s)	704, 1420, 1496, 1642, 2136, 3231
TaiI	ACGT	2 cut(s)	942, 2341
TaqI	TCGA	9 cut(s)	54, 66, 403, 936, 1487, 1599, 1740, 2380, 2683
TatI	WGTACW	3 cut(s)	664, 697, 1155
TauI	GCSGC	2 cut(s)	2016, 2783
TfiI	GAWTC	8 cut(s)	647, 896, 920, 1016, 1397, 2273, 2315, 3092
Tru1I	TTAA	9 cut(s)	86, 207, 374, 383, 1404, 1805, 2031, 2424, 2442
Tru9I	TTAA	9 cut(s)	86, 207, 374, 383, 1404, 1805, 2031, 2424, 2442
TscAI	CASTG	9 cut(s)	327, 373, 757, 933, 1223, 1423, 2417, 2808, 3236
TseFI	GTSAC	7 cut(s)	1214, 1553, 2097, 2147, 2243, 2799, 3029
Tsp45I	GTSAC	7 cut(s)	1214, 1553, 2097, 2147, 2243, 2799, 3029
TspGWI	ACGGA	5 cut(s)	26, 129, 487, 2010, 2869
TspRI	CASTG	9 cut(s)	327, 373, 757, 933, 1223, 1423, 2417, 2808, 3236
Van91I	CCANNNNNTGG	1 cut(s)	2453
Vha464I	CTTAAG	1 cut(s)	1403
VpaK11BI	GGWCC	6 cut(s)	39, 47, 1280, 2622, 2957, 3000
VspI	ATTAAT	1 cut(s)	383
XagI	CCTNNNNNAGG	1 cut(s)	2639
XapI	RAATTY	5 cut(s)	435, 490, 1773, 2366, 3046
XbaI	TCTAGA	2 cut(s)	224, 2507
XceI	RCATGY	3 cut(s)	971, 1262, 2952
XmiI	GTMKAC	5 cut(s)	1189, 1255, 1668, 3285, 3315
XmnI	GAANNNNTTC	2 cut(s)	2471, 2503
ZraI	GACGTC	1 cut(s)	940
Zsp2I	ATGCAT	1 cut(s)	733

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.