Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0015283

Physical Location & Seq

Genomic Coordinates Reverse (-)

72156259 .. 72158669

Gene Structure 2411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG451800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGCCTTTACATCCCCAAATCCCCATTTTACCCCTACCCACTTCCTCTATTTCCTCCTCCTCACTTCCTCTCTCCCCTTTACTCTTTCCATCAACATCACCGCTCTCCTCTCCCCCTTCCCCGACCTCTCCGACTTCACCTCCCTCCTCTCCGCCGCCATCTTCTCAGATCTCTCCCTCCGCTCCTCCCTCACCCTCCTCGCCGTCCCTAACCCTTTCCTCTCCTCCACCTCCGACCTCACGCGCCACCTCTCCCCCTCCTCACGCGCCGACGTCCTCCGCTACCACGTCCTCCTCGAGTACCTCTCCCTCTCCGACCTCGCCCGCATCCCCCCTTCGGGAAAACTCGTCACCACTCTCTACCAGACCACCGGACGCGCCACCAACGACTTCGGCTCCGTCAATCTCACGCGCGACCCGACCACCGGGATCGTCTCCGTCCGCTCCCCCGCCACCTTCTCCCCCTCAAACGCCACCGTTTTGGGGCTCGTCAAGACTCTTCCGTACAATGTCAGCATCTTTTCCGTTAATTCCCTCCTTGTCCCTTACGGCTTCGACCTCATGGCCTCCGAGACCCGGCCCCCTCTGGGCCTCAACATCACCAAGGCCCTGATCGACGGCCACAACTTCAACGTCGCCGCCTCCATGCTCGCCGCATCCGGCGTCGTCGAGGAATTCGAGGCCGATGAGGGCGGCGCCGGAATCACTCTCTTCGTCCCTACTGACACTGCCTTCTCCGACCTCCCCGCAAACGTGAGGCTCCAATCTCTCCCGGCGGATAAGAAATCGGTGGTGTTGAAGTTCCATGTGCTCCACTCCTACTACCCATTGGGGTCGCTCGAGTCGATTGTGAACCCGGTCCAGCCCACATTGGCTACAGAGCTGGTGGGAGCCGGTAGCTACACTCTCAACATCAGCAGAAACAACGGCTCCGTTTCAATCAACACCGGAATCATCCAGGCCTCGGTGACCCAGACGGTGTTCGATCAAAAGCCGGTGGCCATTTTCGGAGTTTCCAGGGTTTTGTTGCCGAAAGAGATTTTTGGGAGCGCCCCGGCAGTCACTTCCAGGCCCGGGACGCCAGTTTCCGGCGGGGCTGAGACGCCGGACAGTGCTCCGTCACCTGACAATTCGATGAGTGGGCAGGAACTCTCTTCGCCGCCCGGTTTTAAGGAGATAAAATCCGAGGGTGCTGCCATTACTGGGCTGTGGAGGTTGGGGGTTGCTTCATGTTGTATAGCATTGTATGTAATGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001871 GO:0003006 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006970 GO:0007155 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009651 GO:0009791 GO:0009825 GO:0009897 GO:0009986 GO:0009987 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0016020 GO:0016049 GO:0022414 GO:0022610 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0040007 GO:0044237 GO:0044249 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0048316 GO:0048354 GO:0048359 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071944 GO:0098552

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

419

Amino Acids

44.31

Weight (kDa)

5.64

Isoelectric Point (pI)

44.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fasciclin	PF02469	209 - 344	5.5e-18	Fasciclin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46550
fragaria_vesca	FvH4_3g36000
malus_domestica	MD11G1109900.v1.1
prunus_persica	Prupe.6G078300_v2.0.a1
pyrus_communis	pycom03g07740 pycom11g09060
rosa_chinensis	RchiOBHm_Chr5g0064411
rosa_laevigata	RLG00000035721
rosa_multiflora	Rmu_sc0001367.1_g000002 Rmu_sc0028469.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016600
rosa_rugosa	Rorug05G0364400
rosa_samantha	Rh5AG422900 Rh5BG438600 Rh5CG461300 Rh5DG451800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	276
AccB1I	GGYRCC	1 cut(s)	695
AccBSI	CCGCTC	3 cut(s)	104, 183, 444
AccII	CGCG	5 cut(s)	244, 267, 378, 412, 414
AclWI	GGATC	1 cut(s)	437
AcoI	YGGCCR	2 cut(s)	619, 999
AcsI	RAATTY	1 cut(s)	674
AcyI	GRCGYC	5 cut(s)	273, 663, 696, 1079, 1103
AfaI	GTAC	2 cut(s)	302, 506
AgsI	TTSAA	3 cut(s)	631, 799, 939
AjiI	CACGTC	1 cut(s)	289
AjnI	CCWGG	3 cut(s)	957, 1016, 1067
AluBI	AGCT	2 cut(s)	883, 900
AluI	AGCT	2 cut(s)	883, 900
Alw21I	GWGCWC	2 cut(s)	813, 1117
Alw26I	GTCTC	3 cut(s)	439, 566, 1094
AlwI	GGATC	1 cut(s)	437
Ama87I	CYCGRG	3 cut(s)	296, 839, 1073
ApeKI	GCWGC	1 cut(s)	1193
ApoI	RAATTY	1 cut(s)	674
AspLEI	GCGC	6 cut(s)	246, 269, 380, 414, 698, 1052
AspS9I	GGNCC	5 cut(s)	579, 589, 607, 859, 1071
AsuC2I	CCSGG	8 cut(s)	427, 577, 773, 857, 1055, 1074, 1075, 1164
AsuHPI	GGTGA	7 cut(s)	91, 130, 184, 343, 592, 979, 1113
AvaI	CYCGRG	3 cut(s)	296, 839, 1073
AvaII	GGWCC	1 cut(s)	859
BalI	TGGCCA	1 cut(s)	1001
BanI	GGYRCC	1 cut(s)	695
BanII	GRGCYC	1 cut(s)	489
Bbv12I	GWGCWC	2 cut(s)	813, 1117
BbvI	GCAGC	1 cut(s)	1180
BccI	CCATC	2 cut(s)	98, 167
BceAI	ACGGC	4 cut(s)	188, 565, 634, 943
BcgI	CGANNNNNNTGC	2 cut(s)	1175, 1209
BciT130I	CCWGG	3 cut(s)	959, 1018, 1069
BcnI	CCSGG	8 cut(s)	427, 577, 773, 857, 1055, 1074, 1075, 1164
BcoDI	GTCTC	3 cut(s)	439, 566, 1094
BfmI	CTRYAG	1 cut(s)	876
BfoI	RGCGCY	2 cut(s)	699, 1053
BglII	AGATCT	1 cut(s)	169
BisI	GCNGC	6 cut(s)	156, 639, 654, 694, 1160, 1194
BlsI	GCNGC	6 cut(s)	157, 640, 655, 695, 1161, 1195
Bme18I	GGWCC	1 cut(s)	859
BmeT110I	CYCGRG	3 cut(s)	296, 839, 1073
BmgBI	CACGTC	1 cut(s)	289
BmgT120I	GGNCC	5 cut(s)	579, 589, 607, 859, 1071
BmiI	GGNNCC	6 cut(s)	397, 581, 697, 761, 892, 931
BmrI	ACTGGG	1 cut(s)	1212
BmsI	GCATC	3 cut(s)	336, 525, 665
BmuI	ACTGGG	1 cut(s)	1212
BplI	GAGNNNNNCTC	2 cut(s)	290, 322
BpuMI	CCSGG	8 cut(s)	427, 577, 773, 857, 1055, 1074, 1075, 1164
BsaHI	GRCGYC	5 cut(s)	273, 663, 696, 1079, 1103
BsaI	GGTCTC	1 cut(s)	566
BsaJI	CCNNGG	6 cut(s)	603, 963, 1017, 1053, 1073, 1185
BsaWI	WCCGGW	2 cut(s)	371, 947
BsaXI	ACNNNNNCTCC	6 cut(s)	125, 155, 380, 410, 914, 944
Bse118I	RCCGGY	2 cut(s)	893, 994
Bse1I	ACTGG	2 cut(s)	1082, 1207
BseBI	CCWGG	3 cut(s)	959, 1018, 1069
BseDI	CCNNGG	6 cut(s)	603, 963, 1017, 1053, 1073, 1185
BseGI	GGATG	4 cut(s)	11, 327, 656, 954
BseMII	CTCAG	2 cut(s)	180, 1089
BseNI	ACTGG	2 cut(s)	1082, 1207
BseRI	GAGGAG	9 cut(s)	47, 50, 98, 137, 175, 188, 214, 250, 284
BseXI	GCAGC	1 cut(s)	1180
Bsh1236I	CGCG	5 cut(s)	244, 267, 378, 412, 414
BshNI	GGYRCC	1 cut(s)	695
BsiHKAI	GWGCWC	2 cut(s)	813, 1117
BsiHKCI	CYCGRG	3 cut(s)	296, 839, 1073
BslFI	GGGAC	4 cut(s)	191, 527, 701, 1090
BsmAI	GTCTC	3 cut(s)	439, 566, 1094
BsmBI	CGTCTC	2 cut(s)	439, 1094
BsmFI	GGGAC	4 cut(s)	191, 527, 701, 1090
Bso31I	GGTCTC	1 cut(s)	566
BsoBI	CYCGRG	3 cut(s)	296, 839, 1073
Bsp1286I	GDGCHC	3 cut(s)	489, 813, 1117
Bsp143I	GATC	4 cut(s)	169, 429, 612, 985
BspCNI	CTCAG	2 cut(s)	179, 1090
BspFNI	CGCG	5 cut(s)	244, 267, 378, 412, 414
BspLI	GGNNCC	6 cut(s)	397, 581, 697, 761, 892, 931
BspPI	GGATC	1 cut(s)	437
BspT107I	GGYRCC	1 cut(s)	695
BspTNI	GGTCTC	1 cut(s)	566
BsrBI	CCGCTC	3 cut(s)	104, 183, 444
BsrFI	RCCGGY	2 cut(s)	893, 994
BsrI	ACTGG	2 cut(s)	1082, 1207
BssAI	RCCGGY	2 cut(s)	893, 994
BssECI	CCNNGG	6 cut(s)	603, 963, 1017, 1053, 1073, 1185
BssMI	GATC	4 cut(s)	169, 429, 612, 985
BssNI	GRCGYC	5 cut(s)	273, 663, 696, 1079, 1103
BssT1I	CCWWGG	1 cut(s)	603
Bst2UI	CCWGG	3 cut(s)	959, 1018, 1069
Bst4CI	ACNGT	3 cut(s)	478, 979, 1112
Bst6I	CTCTTC	3 cut(s)	504, 716, 1159
BstACI	GRCGYC	5 cut(s)	273, 663, 696, 1079, 1103
BstC8I	GCNNGC	2 cut(s)	325, 651
BstDEI	CTNAG	2 cut(s)	166, 1098
BstEII	GGTNACC	1 cut(s)	967
BstF5I	GGATG	4 cut(s)	11, 327, 656, 954
BstFNI	CGCG	5 cut(s)	244, 267, 378, 412, 414
BstH2I	RGCGCY	2 cut(s)	699, 1053
BstHHI	GCGC	6 cut(s)	246, 269, 380, 414, 698, 1052
BstKTI	GATC	4 cut(s)	172, 432, 615, 988
BstMAI	GTCTC	3 cut(s)	439, 566, 1094
BstMBI	GATC	4 cut(s)	169, 429, 612, 985
BstMWI	GCNNNNNNNGC	1 cut(s)	1078
BstNI	CCWGG	3 cut(s)	959, 1018, 1069
BstPI	GGTNACC	1 cut(s)	967
BstSFI	CTRYAG	1 cut(s)	876
BstUI	CGCG	5 cut(s)	244, 267, 378, 412, 414
BstV1I	GCAGC	1 cut(s)	1180
BstX2I	RGATCY	1 cut(s)	169
BstXI	CCANNNNNNTGG	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	169
BtrI	CACGTC	1 cut(s)	289
BtsCI	GGATG	4 cut(s)	11, 327, 656, 954
BtsI	GCAGTG	1 cut(s)	726
BtsIMutI	CAGTG	2 cut(s)	726, 1117
Cac8I	GCNNGC	2 cut(s)	325, 651
CfoI	GCGC	6 cut(s)	246, 269, 380, 414, 698, 1052
Cfr10I	RCCGGY	2 cut(s)	893, 994
Cfr13I	GGNCC	5 cut(s)	579, 589, 607, 859, 1071
Cfr9I	CCCGGG	1 cut(s)	1073
CseI	GACGC	4 cut(s)	384, 652, 1087, 1111
Csp6I	GTAC	2 cut(s)	301, 505
CviAII	CATG	4 cut(s)	562, 646, 806, 1230
CviQI	GTAC	2 cut(s)	301, 505
DdeI	CTNAG	2 cut(s)	166, 1098
DinI	GGCGCC	1 cut(s)	697
DpnI	GATC	4 cut(s)	171, 431, 614, 987
DpnII	GATC	4 cut(s)	169, 429, 612, 985
EaeI	YGGCCR	2 cut(s)	619, 999
Eam1104I	CTCTTC	3 cut(s)	504, 716, 1159
EarI	CTCTTC	3 cut(s)	504, 716, 1159
EciI	GGCGGA	2 cut(s)	142, 791
Eco130I	CCWWGG	1 cut(s)	603
Eco147I	AGGCCT	1 cut(s)	962
Eco24I	GRGCYC	1 cut(s)	489
Eco31I	GGTCTC	1 cut(s)	566
Eco47I	GGWCC	1 cut(s)	859
Eco88I	CYCGRG	3 cut(s)	296, 839, 1073
Eco91I	GGTNACC	1 cut(s)	967
EcoO109I	RGGNCCY	1 cut(s)	607
EcoO65I	GGTNACC	1 cut(s)	967
EcoRI	GAATTC	1 cut(s)	674
EcoRII	CCWGG	3 cut(s)	957, 1016, 1067
EcoT14I	CCWWGG	1 cut(s)	603
EcoT38I	GRGCYC	1 cut(s)	489
EgeI	GGCGCC	1 cut(s)	697
EheI	GGCGCC	1 cut(s)	697
ErhI	CCWWGG	1 cut(s)	603
Esp3I	CGTCTC	2 cut(s)	439, 1094
FaeI	CATG	4 cut(s)	565, 649, 809, 1233
FaiI	YATR	7 cut(s)	563, 647, 807, 1231, 1238, 1248, 1258
FaqI	GGGAC	4 cut(s)	191, 527, 701, 1090
FatI	CATG	4 cut(s)	561, 645, 805, 1229
FauI	CCCGC	4 cut(s)	332, 457, 754, 1085
Fnu4HI	GCNGC	6 cut(s)	156, 639, 654, 694, 1160, 1194
FokI	GGATG	3 cut(s)	314, 643, 941
FriOI	GRGCYC	1 cut(s)	489
Fsp4HI	GCNGC	6 cut(s)	156, 639, 654, 694, 1160, 1194
GlaI	GCGC	6 cut(s)	245, 268, 379, 413, 697, 1051
GluI	GCNGC	6 cut(s)	156, 639, 654, 694, 1160, 1194
HaeII	RGCGCY	2 cut(s)	699, 1053
HgaI	GACGC	4 cut(s)	384, 652, 1087, 1111
HhaI	GCGC	6 cut(s)	246, 269, 380, 414, 698, 1052
Hin1I	GRCGYC	5 cut(s)	273, 663, 696, 1079, 1103
Hin1II	CATG	4 cut(s)	565, 649, 809, 1233
Hin6I	GCGC	6 cut(s)	244, 267, 378, 412, 696, 1050
HinP1I	GCGC	6 cut(s)	244, 267, 378, 412, 696, 1050
HinfI	GANTC	4 cut(s)	496, 702, 842, 951
HphI	GGTGA	7 cut(s)	91, 130, 184, 343, 592, 979, 1113
Hpy166II	GTNNAC	1 cut(s)	853
Hpy188I	TCNGA	8 cut(s)	133, 169, 235, 316, 571, 739, 1010, 1186
Hpy188III	TCNNGA	2 cut(s)	339, 493
Hpy8I	GTNNAC	1 cut(s)	853
Hpy99I	CGWCG	5 cut(s)	275, 620, 638, 668, 671
HpyAV	CCTTC	4 cut(s)	127, 345, 466, 742
HpyCH4III	ACNGT	3 cut(s)	478, 979, 1112
HpyCH4IV	ACGT	4 cut(s)	273, 288, 633, 753
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1078
HpyF3I	CTNAG	2 cut(s)	166, 1098
HpySE526I	ACGT	4 cut(s)	273, 288, 633, 753
Hsp92I	GRCGYC	5 cut(s)	273, 663, 696, 1079, 1103
Hsp92II	CATG	4 cut(s)	565, 649, 809, 1233
HspAI	GCGC	6 cut(s)	244, 267, 378, 412, 696, 1050
KasI	GGCGCC	1 cut(s)	695
Kzo9I	GATC	4 cut(s)	169, 429, 612, 985
LmnI	GCTCC	9 cut(s)	188, 401, 449, 765, 816, 890, 935, 1047, 1120
Lsp1109I	GCAGC	1 cut(s)	1180
LweI	GCATC	3 cut(s)	336, 525, 665
MaeII	ACGT	4 cut(s)	273, 288, 633, 753
MaeIII	GTNAC	4 cut(s)	349, 967, 1060, 1119
MalI	GATC	4 cut(s)	171, 431, 614, 987
MbiI	CCGCTC	3 cut(s)	104, 183, 444
MboI	GATC	4 cut(s)	169, 429, 612, 985
MboII	GAAGA	4 cut(s)	154, 491, 703, 1146
MflI	RGATCY	1 cut(s)	169
MhlI	GDGCHC	3 cut(s)	489, 813, 1117
MlsI	TGGCCA	1 cut(s)	1001
MluCI	AATT	3 cut(s)	529, 674, 1129
MluNI	TGGCCA	1 cut(s)	1001
Mly113I	GGCGCC	1 cut(s)	696
MlyI	GAGTC	2 cut(s)	490, 851
MmeI	TCCRAC	4 cut(s)	156, 258, 339, 762
Mox20I	TGGCCA	1 cut(s)	1001
MscI	TGGCCA	1 cut(s)	1001
MseI	TTAA	2 cut(s)	528, 1170
Msp20I	TGGCCA	1 cut(s)	1001
MvaI	CCWGG	3 cut(s)	959, 1018, 1069
MvnI	CGCG	5 cut(s)	244, 267, 378, 412, 414
MwoI	GCNNNNNNNGC	1 cut(s)	1078
NarI	GGCGCC	1 cut(s)	696
NciI	CCSGG	8 cut(s)	427, 577, 773, 857, 1055, 1074, 1075, 1164
NdeII	GATC	4 cut(s)	169, 429, 612, 985
NlaIII	CATG	4 cut(s)	565, 649, 809, 1233
NlaIV	GGNNCC	6 cut(s)	397, 581, 697, 761, 892, 931
NmuCI	GTSAC	4 cut(s)	349, 967, 1060, 1119
PaeR7I	CTCGAG	2 cut(s)	296, 839
PceI	AGGCCT	1 cut(s)	962
PcsI	WCGNNNNNNNCGW	4 cut(s)	294, 416, 675, 842
PfeI	GAWTC	2 cut(s)	702, 951
PkrI	GCNGC	6 cut(s)	157, 640, 655, 695, 1161, 1195
PleI	GAGTC	2 cut(s)	490, 850
PluTI	GGCGCC	1 cut(s)	699
PpsI	GAGTC	2 cut(s)	490, 850
Psp6I	CCWGG	3 cut(s)	957, 1016, 1067
PspEI	GGTNACC	1 cut(s)	967
PspGI	CCWGG	3 cut(s)	957, 1016, 1067
PspN4I	GGNNCC	6 cut(s)	397, 581, 697, 761, 892, 931
PspPI	GGNCC	5 cut(s)	579, 589, 607, 859, 1071
PspXI	VCTCGAGB	2 cut(s)	296, 839
PsuI	RGATCY	1 cut(s)	169
RsaI	GTAC	2 cut(s)	302, 506
RsaNI	GTAC	2 cut(s)	301, 505
SaqAI	TTAA	2 cut(s)	528, 1170
SatI	GCNGC	6 cut(s)	156, 639, 654, 694, 1160, 1194
Sau3AI	GATC	4 cut(s)	169, 429, 612, 985
Sau96I	GGNCC	5 cut(s)	579, 589, 607, 859, 1071
SchI	GAGTC	2 cut(s)	490, 851
SduI	GDGCHC	3 cut(s)	489, 813, 1117
SfaNI	GCATC	3 cut(s)	336, 525, 665
SfcI	CTRYAG	1 cut(s)	876
SfoI	GGCGCC	1 cut(s)	697
Sfr274I	CTCGAG	2 cut(s)	296, 839
SinI	GGWCC	1 cut(s)	859
SlaI	CTCGAG	2 cut(s)	296, 839
SmaI	CCCGGG	1 cut(s)	1075
SmlI	CTYRAG	2 cut(s)	296, 839
SmoI	CTYRAG	2 cut(s)	296, 839
Sse9I	AATT	3 cut(s)	529, 674, 1129
SseBI	AGGCCT	1 cut(s)	962
SspDI	GGCGCC	1 cut(s)	695
StuI	AGGCCT	1 cut(s)	962
StyI	CCWWGG	1 cut(s)	603
TaaI	ACNGT	3 cut(s)	478, 979, 1112
TaiI	ACGT	4 cut(s)	276, 291, 636, 756
TaqI	TCGA	9 cut(s)	297, 555, 615, 669, 678, 840, 845, 984, 1133
TasI	AATT	3 cut(s)	529, 674, 1129
TauI	GCSGC	5 cut(s)	158, 641, 656, 696, 1162
TfiI	GAWTC	2 cut(s)	702, 951
Tru1I	TTAA	2 cut(s)	528, 1170
Tru9I	TTAA	2 cut(s)	528, 1170
TscAI	CASTG	2 cut(s)	733, 1117
TseFI	GTSAC	4 cut(s)	349, 967, 1060, 1119
TseI	GCWGC	1 cut(s)	1193
Tsp45I	GTSAC	4 cut(s)	349, 967, 1060, 1119
TspDTI	ATGAA	1 cut(s)	1218
TspGWI	ACGGA	6 cut(s)	388, 427, 492, 514, 922, 1107
TspMI	CCCGGG	1 cut(s)	1073
TspRI	CASTG	2 cut(s)	733, 1117
VpaK11BI	GGWCC	1 cut(s)	859
XapI	RAATTY	1 cut(s)	674
XhoI	CTCGAG	2 cut(s)	296, 839
XmaI	CCCGGG	1 cut(s)	1073
ZraI	GACGTC	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.