FvH4_3g36000

Fasciclin-like arabinogalactan protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
30891208 .. 30892458
1251 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g36000.t1

Sequence Viewer

Length: 1251 bp
ATGGCCTTTCCATCCCCAAATCCCCATTTTACCCCTACCCATCTCCTCTATCTCCTCCTTCTCCTCCTCCTCCTCCCCTCCTCTCTCTCCGTCAACATCACCACTCTCCTCTCCCCCTTCCCCGACCTCTCCGACTTCACCTCCCTCCTCTCCTCCTCCCTCTCCTCAGATCTCTCCCTCCGCTCCTCCCTCACCCTCCTCGCCGTCCCCAACTCCTTCCTCGCCTCCACCTCCGACCTCACGCGCCACCTCTCCCCCTCCTCACGCGCCGACGTCCTCCGCTACCACGTCCTCCTCGAGTACCTCTCCCTCTCCGACCTCGCCCGCATCCCCCCGTACGGGAAACTCGTCACCACGCTCTACCAGACCACCGGACGCGCCACCAACGACTTCGGCTCCGTCAATCTCACGCGCGACCCCGCCACCGGGATCGTCTCCGTCCGCTCCCCGGTCCCCTACTCCCCCTCAAACGCCACCGTTTTGGGGCTCATCAAGACTCTTCCTTACAATGTCAGCATCTTTTCCGTTAATTCCCTCCTTGTCCCTTACGGCTGCGACCTCATGGCCTCCGAGACTCGCCCCCCGCTGGGCCTCAACATCACCAAGGCCTTGATCGACGGCCACAACTTCAACGTCGCCGCTTCCATGCTAGCCGGGTCCGGCGTCATCGAGGAGTTCGAGGCAGACGAAGGCGGCGCCGGCATCACACTCTTTGTCCCCACCGACACCGCCTTCTCCGACCTCCCGGCGAATGTGAGGCTACAATCACTCGCGGCGGATAAGAAATCAGTGGTGTTGAAGTTCCATGTGCTCCATTCCTACTACCCATTGGGGTCACTCGAGTCGATTGTGAACCCGGTCCAGCCCACATTGGCCACAGAGCAAGTCGGTGCCGGTTCCTACACTCTCAACATCAGCCGAAACAACGGCTCCGTTTCCATCAACACCGGAATCGTCCAGGCCAAGGTGACCCAGACAGTGTTTGATCAAAAGCCGGTGGCCATTTTCGGAGTTTCCAAAGTCTTGTTGCCCAAAGAGATTTTTGGGAGCAGCCCAGAAGTGACACCCAAGCCCGGACCGCCAATTTCTGAGCCACCGGAGAGTGCTCCCTCGCCGGATAGTTCAATGAGTGGGCAGGAGCTCTCTTCGCCGCCCGGGTTTAAGGAGATCAAATCGGAAGCTGCTGGCATTACTGCGCTGTGGAGCTTGGGGGTTGCTTCATGTTGTATAGGATTGTATCTAATGGTATGA

Protein Analysis

417

Amino Acids

44.04

Weight (kDa)

5.5

Isoelectric Point (pI)

49.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 209 - 344 3.5e-17 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015283)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 276
AccB1I GGYRCC 2 cut(s) 695, 890
AccBSI CCGCTC 2 cut(s) 183, 444
AccII CGCG 6 cut(s) 244, 267, 378, 412, 414, 773
AclWI GGATC 1 cut(s) 437
AcoI YGGCCR 3 cut(s) 619, 873, 999
AcyI GRCGYC 3 cut(s) 273, 663, 696
AfaI GTAC 2 cut(s) 302, 338
AgsI TTSAA 3 cut(s) 631, 799, 1125
AjiI CACGTC 1 cut(s) 289
AjnI CCWGG 1 cut(s) 957
AluBI AGCT 3 cut(s) 1141, 1181, 1206
AluI AGCT 3 cut(s) 1141, 1181, 1206
Alw21I GWGCWC 3 cut(s) 813, 1108, 1143
Alw26I GTCTC 2 cut(s) 439, 566
AlwI GGATC 1 cut(s) 437
Ama87I CYCGRG 3 cut(s) 296, 839, 1154
AoxI GGCC 8 cut(s) 3, 564, 589, 606, 619, 873, 960, 999
ApeKI GCWGC 3 cut(s) 552, 1050, 1181
AspLEI GCGC 6 cut(s) 246, 269, 380, 414, 698, 1198
AspS9I GGNCC 5 cut(s) 451, 589, 657, 859, 1076
AsuC2I CCSGG 8 cut(s) 427, 449, 655, 746, 857, 1074, 1155, 1156
AsuHPI GGTGA 6 cut(s) 91, 130, 184, 343, 592, 979
AsuNHI GCTAGC 1 cut(s) 649
AvaI CYCGRG 3 cut(s) 296, 839, 1154
AvaII GGWCC 4 cut(s) 451, 657, 859, 1076
BalI TGGCCA 2 cut(s) 875, 1001
BanI GGYRCC 2 cut(s) 695, 890
BanII GRGCYC 2 cut(s) 489, 1143
Bbv12I GWGCWC 3 cut(s) 813, 1108, 1143
BbvI GCAGC 3 cut(s) 539, 1062, 1168
BccI CCATC 3 cut(s) 19, 48, 947
BceAI ACGGC 4 cut(s) 188, 565, 634, 943
BciT130I CCWGG 1 cut(s) 959
BclI TGATCA 1 cut(s) 985
BcnI CCSGG 8 cut(s) 427, 449, 655, 746, 857, 1074, 1155, 1156
BcoDI GTCTC 2 cut(s) 439, 566
BfaI CTAG 1 cut(s) 650
BfoI RGCGCY 1 cut(s) 699
BglII AGATCT 1 cut(s) 169
BisI GCNGC 7 cut(s) 553, 639, 694, 774, 1051, 1151, 1182
BlsI GCNGC 7 cut(s) 554, 640, 695, 775, 1052, 1152, 1183
Bme1390I CCNGG 9 cut(s) 427, 449, 655, 746, 857, 959, 1074, 1155, 1156
Bme18I GGWCC 4 cut(s) 451, 657, 859, 1076
BmeT110I CYCGRG 3 cut(s) 296, 839, 1154
BmgBI CACGTC 1 cut(s) 289
BmgT120I GGNCC 5 cut(s) 451, 589, 657, 859, 1076
BmiI GGNNCC 7 cut(s) 397, 453, 658, 697, 892, 898, 931
BmrFI CCNGG 9 cut(s) 427, 449, 655, 746, 857, 959, 1074, 1155, 1156
BmsI GCATC 3 cut(s) 336, 525, 711
BmtI GCTAGC 1 cut(s) 653
BplI GAGNNNNNCTC 2 cut(s) 290, 322
BpuMI CCSGG 8 cut(s) 427, 449, 655, 746, 857, 1074, 1155, 1156
BsaHI GRCGYC 3 cut(s) 273, 663, 696
BsaJI CCNNGG 4 cut(s) 447, 603, 963, 1154
BsaWI WCCGGW 3 cut(s) 371, 947, 1096
BsaXI ACNNNNNCTCC 6 cut(s) 125, 155, 380, 410, 914, 944
Bse118I RCCGGY 3 cut(s) 698, 893, 994
BseBI CCWGG 1 cut(s) 959
BseDI CCNNGG 4 cut(s) 447, 603, 963, 1154
BseGI GGATG 2 cut(s) 11, 327
BseMII CTCAG 2 cut(s) 180, 1080
BseXI GCAGC 3 cut(s) 539, 1062, 1168
BseYI CCCAGC 1 cut(s) 586
Bsh1236I CGCG 6 cut(s) 244, 267, 378, 412, 414, 773
BshFI GGCC 8 cut(s) 5, 566, 591, 608, 621, 875, 962, 1001
BshNI GGYRCC 2 cut(s) 695, 890
BsiHKAI GWGCWC 3 cut(s) 813, 1108, 1143
BsiHKCI CYCGRG 3 cut(s) 296, 839, 1154
BsiWI CGTACG 1 cut(s) 336
BslFI GGGAC 4 cut(s) 191, 437, 527, 701
BsmAI GTCTC 2 cut(s) 439, 566
BsmBI CGTCTC 1 cut(s) 439
BsmFI GGGAC 4 cut(s) 191, 437, 527, 701
BsnI GGCC 8 cut(s) 5, 566, 591, 608, 621, 875, 962, 1001
BsoBI CYCGRG 3 cut(s) 296, 839, 1154
Bsp1286I GDGCHC 4 cut(s) 489, 813, 1108, 1143
Bsp143I GATC 5 cut(s) 169, 429, 612, 985, 1167
BspANI GGCC 8 cut(s) 5, 566, 591, 608, 621, 875, 962, 1001
BspCNI CTCAG 2 cut(s) 179, 1081
BspFNI CGCG 6 cut(s) 244, 267, 378, 412, 414, 773
BspLI GGNNCC 7 cut(s) 397, 453, 658, 697, 892, 898, 931
BspOI GCTAGC 1 cut(s) 653
BspPI GGATC 1 cut(s) 437
BspT107I GGYRCC 2 cut(s) 695, 890
BsrBI CCGCTC 2 cut(s) 183, 444
BsrFI RCCGGY 3 cut(s) 698, 893, 994
BssAI RCCGGY 3 cut(s) 698, 893, 994
BssECI CCNNGG 4 cut(s) 447, 603, 963, 1154
BssMI GATC 5 cut(s) 169, 429, 612, 985, 1167
BssNI GRCGYC 3 cut(s) 273, 663, 696
BssT1I CCWWGG 2 cut(s) 603, 963
Bst2UI CCWGG 1 cut(s) 959
Bst4CI ACNGT 2 cut(s) 478, 979
Bst6I CTCTTC 2 cut(s) 504, 1150
BstACI GRCGYC 3 cut(s) 273, 663, 696
BstC8I GCNNGC 4 cut(s) 325, 651, 700, 1186
BstDEI CTNAG 2 cut(s) 166, 1089
BstEII GGTNACC 1 cut(s) 967
BstF5I GGATG 2 cut(s) 11, 327
BstFNI CGCG 6 cut(s) 244, 267, 378, 412, 414, 773
BstH2I RGCGCY 1 cut(s) 699
BstHHI GCGC 6 cut(s) 246, 269, 380, 414, 698, 1198
BstKTI GATC 5 cut(s) 172, 432, 615, 988, 1170
BstMAI GTCTC 2 cut(s) 439, 566
BstMBI GATC 5 cut(s) 169, 429, 612, 985, 1167
BstMWI GCNNNNNNNGC 3 cut(s) 699, 1078, 1147
BstNI CCWGG 1 cut(s) 959
BstPI GGTNACC 1 cut(s) 967
BstSCI CCNGG 9 cut(s) 425, 447, 653, 744, 855, 957, 1072, 1153, 1154
BstUI CGCG 6 cut(s) 244, 267, 378, 412, 414, 773
BstV1I GCAGC 3 cut(s) 539, 1062, 1168
BstX2I RGATCY 1 cut(s) 169
BstXI CCANNNNNNTGG 1 cut(s) 481
BstYI RGATCY 1 cut(s) 169
BsuRI GGCC 8 cut(s) 5, 566, 591, 608, 621, 875, 962, 1001
BtrI CACGTC 1 cut(s) 289
BtsCI GGATG 2 cut(s) 11, 327
BtsIMutI CAGTG 2 cut(s) 795, 984
Cac8I GCNNGC 4 cut(s) 325, 651, 700, 1186
CfoI GCGC 6 cut(s) 246, 269, 380, 414, 698, 1198
Cfr10I RCCGGY 3 cut(s) 698, 893, 994
Cfr13I GGNCC 5 cut(s) 451, 589, 657, 859, 1076
Cfr9I CCCGGG 1 cut(s) 1154
CpoI CGGWCCG 1 cut(s) 1076
CseI GACGC 2 cut(s) 384, 652
Csp6I GTAC 2 cut(s) 301, 337
CspI CGGWCCG 1 cut(s) 1076
CviAII CATG 4 cut(s) 562, 646, 806, 1221
CviQI GTAC 2 cut(s) 301, 337
DdeI CTNAG 2 cut(s) 166, 1089
DinI GGCGCC 1 cut(s) 697
DpnI GATC 5 cut(s) 171, 431, 614, 987, 1169
DpnII GATC 5 cut(s) 169, 429, 612, 985, 1167
EaeI YGGCCR 3 cut(s) 619, 873, 999
Eam1104I CTCTTC 2 cut(s) 504, 1150
EarI CTCTTC 2 cut(s) 504, 1150
EciI GGCGGA 1 cut(s) 791
Ecl136II GAGCTC 1 cut(s) 1141
Eco130I CCWWGG 2 cut(s) 603, 963
Eco147I AGGCCT 1 cut(s) 608
Eco24I GRGCYC 2 cut(s) 489, 1143
Eco47I GGWCC 4 cut(s) 451, 657, 859, 1076
Eco53kI GAGCTC 1 cut(s) 1141
Eco88I CYCGRG 3 cut(s) 296, 839, 1154
Eco91I GGTNACC 1 cut(s) 967
EcoICRI GAGCTC 1 cut(s) 1141
EcoO65I GGTNACC 1 cut(s) 967
EcoRII CCWGG 1 cut(s) 957
EcoT14I CCWWGG 2 cut(s) 603, 963
EcoT38I GRGCYC 2 cut(s) 489, 1143
EgeI GGCGCC 1 cut(s) 697
EheI GGCGCC 1 cut(s) 697
ErhI CCWWGG 2 cut(s) 603, 963
Esp3I CGTCTC 1 cut(s) 439
FaeI CATG 4 cut(s) 565, 649, 809, 1224
FaiI YATR 6 cut(s) 563, 647, 807, 1222, 1229, 1249
FaqI GGGAC 4 cut(s) 191, 437, 527, 701
FatI CATG 4 cut(s) 561, 645, 805, 1220
FauI CCCGC 3 cut(s) 332, 427, 591
FbaI TGATCA 1 cut(s) 985
Fnu4HI GCNGC 7 cut(s) 553, 639, 694, 774, 1051, 1151, 1182
FokI GGATG 1 cut(s) 314
FriOI GRGCYC 2 cut(s) 489, 1143
Fsp4HI GCNGC 7 cut(s) 553, 639, 694, 774, 1051, 1151, 1182
FspBI CTAG 1 cut(s) 650
GlaI GCGC 6 cut(s) 245, 268, 379, 413, 697, 1197
GluI GCNGC 7 cut(s) 553, 639, 694, 774, 1051, 1151, 1182
GsaI CCCAGC 1 cut(s) 590
HaeII RGCGCY 1 cut(s) 699
HaeIII GGCC 8 cut(s) 5, 566, 591, 608, 621, 875, 962, 1001
HgaI GACGC 2 cut(s) 384, 652
HhaI GCGC 6 cut(s) 246, 269, 380, 414, 698, 1198
Hin1I GRCGYC 3 cut(s) 273, 663, 696
Hin1II CATG 4 cut(s) 565, 649, 809, 1224
Hin6I GCGC 6 cut(s) 244, 267, 378, 412, 696, 1196
HinP1I GCGC 6 cut(s) 244, 267, 378, 412, 696, 1196
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HinfI GANTC 4 cut(s) 496, 574, 842, 951
HphI GGTGA 6 cut(s) 91, 130, 184, 343, 592, 979
Hpy166II GTNNAC 2 cut(s) 94, 853
Hpy188I TCNGA 9 cut(s) 133, 169, 235, 316, 571, 739, 1010, 1090, 1177
Hpy188III TCNNGA 1 cut(s) 493
Hpy8I GTNNAC 2 cut(s) 94, 853
Hpy99I CGWCG 3 cut(s) 275, 620, 638
HpyAV CCTTC 5 cut(s) 68, 127, 226, 683, 742
HpyCH4III ACNGT 2 cut(s) 478, 979
HpyCH4IV ACGT 3 cut(s) 273, 288, 633
HpyF10VI GCNNNNNNNGC 3 cut(s) 699, 1078, 1147
HpyF3I CTNAG 2 cut(s) 166, 1089
HpySE526I ACGT 3 cut(s) 273, 288, 633
Hsp92I GRCGYC 3 cut(s) 273, 663, 696
Hsp92II CATG 4 cut(s) 565, 649, 809, 1224
HspAI GCGC 6 cut(s) 244, 267, 378, 412, 696, 1196
KasI GGCGCC 1 cut(s) 695
KroI GCCGGC 1 cut(s) 698
KroNI GCCGGC 1 cut(s) 700
Ksp22I TGATCA 1 cut(s) 985
Kzo9I GATC 5 cut(s) 169, 429, 612, 985, 1167
LmnI GCTCC 9 cut(s) 188, 401, 449, 816, 935, 1047, 1111, 1138, 1203
Lsp1109I GCAGC 3 cut(s) 539, 1062, 1168
LweI GCATC 3 cut(s) 336, 525, 711
MaeI CTAG 1 cut(s) 650
MaeII ACGT 3 cut(s) 273, 288, 633
MaeIII GTNAC 4 cut(s) 349, 834, 967, 1060
MalI GATC 5 cut(s) 171, 431, 614, 987, 1169
MbiI CCGCTC 2 cut(s) 183, 444
MboI GATC 5 cut(s) 169, 429, 612, 985, 1167
MboII GAAGA 2 cut(s) 491, 1137
MflI RGATCY 1 cut(s) 169
MhlI GDGCHC 4 cut(s) 489, 813, 1108, 1143
MlsI TGGCCA 2 cut(s) 875, 1001
MluCI AATT 2 cut(s) 529, 1083
MluNI TGGCCA 2 cut(s) 875, 1001
Mly113I GGCGCC 1 cut(s) 696
MlyI GAGTC 3 cut(s) 490, 568, 851
MmeI TCCRAC 4 cut(s) 156, 258, 339, 762
Mox20I TGGCCA 2 cut(s) 875, 1001
MroNI GCCGGC 1 cut(s) 698
MscI TGGCCA 2 cut(s) 875, 1001
MseI TTAA 2 cut(s) 528, 1161
Msp20I TGGCCA 2 cut(s) 875, 1001
MspA1I CMGCKG 1 cut(s) 586
MspR9I CCNGG 9 cut(s) 427, 449, 655, 746, 857, 959, 1074, 1155, 1156
MvaI CCWGG 1 cut(s) 959
MvnI CGCG 6 cut(s) 244, 267, 378, 412, 414, 773
MwoI GCNNNNNNNGC 3 cut(s) 699, 1078, 1147
NaeI GCCGGC 1 cut(s) 700
NarI GGCGCC 1 cut(s) 696
NciI CCSGG 8 cut(s) 427, 449, 655, 746, 857, 1074, 1155, 1156
NdeII GATC 5 cut(s) 169, 429, 612, 985, 1167
NgoMIV GCCGGC 1 cut(s) 698
NheI GCTAGC 1 cut(s) 649
NlaIII CATG 4 cut(s) 565, 649, 809, 1224
NlaIV GGNNCC 7 cut(s) 397, 453, 658, 697, 892, 898, 931
NmuCI GTSAC 4 cut(s) 349, 834, 967, 1060
PaeR7I CTCGAG 2 cut(s) 296, 839
PceI AGGCCT 1 cut(s) 608
PcsI WCGNNNNNNNCGW 4 cut(s) 294, 345, 675, 684
PdiI GCCGGC 1 cut(s) 700
PfeI GAWTC 1 cut(s) 951
Pfl23II CGTACG 1 cut(s) 336
PkrI GCNGC 7 cut(s) 554, 640, 695, 775, 1052, 1152, 1183
PleI GAGTC 3 cut(s) 490, 568, 850
PluTI GGCGCC 1 cut(s) 699
PpsI GAGTC 3 cut(s) 490, 568, 850
Psp124BI GAGCTC 1 cut(s) 1143
Psp6I CCWGG 1 cut(s) 957
PspEI GGTNACC 1 cut(s) 967
PspFI CCCAGC 1 cut(s) 586
PspGI CCWGG 1 cut(s) 957
PspLI CGTACG 1 cut(s) 336
PspN4I GGNNCC 7 cut(s) 397, 453, 658, 697, 892, 898, 931
PspPI GGNCC 5 cut(s) 451, 589, 657, 859, 1076
PspXI VCTCGAGB 2 cut(s) 296, 839
PsuI RGATCY 1 cut(s) 169
RsaI GTAC 2 cut(s) 302, 338
RsaNI GTAC 2 cut(s) 301, 337
Rsr2I CGGWCCG 1 cut(s) 1076
RsrII CGGWCCG 1 cut(s) 1076
SacI GAGCTC 1 cut(s) 1143
SaqAI TTAA 2 cut(s) 528, 1161
SatI GCNGC 7 cut(s) 553, 639, 694, 774, 1051, 1151, 1182
Sau3AI GATC 5 cut(s) 169, 429, 612, 985, 1167
Sau96I GGNCC 5 cut(s) 451, 589, 657, 859, 1076
SchI GAGTC 3 cut(s) 490, 568, 851
ScrFI CCNGG 9 cut(s) 427, 449, 655, 746, 857, 959, 1074, 1155, 1156
SduI GDGCHC 4 cut(s) 489, 813, 1108, 1143
SfaNI GCATC 3 cut(s) 336, 525, 711
SfoI GGCGCC 1 cut(s) 697
Sfr274I CTCGAG 2 cut(s) 296, 839
SinI GGWCC 4 cut(s) 451, 657, 859, 1076
SlaI CTCGAG 2 cut(s) 296, 839
SmaI CCCGGG 1 cut(s) 1156
SmlI CTYRAG 2 cut(s) 296, 839
SmoI CTYRAG 2 cut(s) 296, 839
Sse9I AATT 2 cut(s) 529, 1083
SseBI AGGCCT 1 cut(s) 608
SspDI GGCGCC 1 cut(s) 695
SspMI CTAG 1 cut(s) 650
SstI GAGCTC 1 cut(s) 1143
StuI AGGCCT 1 cut(s) 608
StyD4I CCNGG 9 cut(s) 425, 447, 653, 744, 855, 957, 1072, 1153, 1154
StyI CCWWGG 2 cut(s) 603, 963
TaaI ACNGT 2 cut(s) 478, 979
TaiI ACGT 3 cut(s) 276, 291, 636
TaqI TCGA 6 cut(s) 297, 615, 669, 678, 840, 845
TasI AATT 2 cut(s) 529, 1083
TauI GCSGC 4 cut(s) 641, 696, 776, 1153
TfiI GAWTC 1 cut(s) 951
Tru1I TTAA 2 cut(s) 528, 1161
Tru9I TTAA 2 cut(s) 528, 1161
TscAI CASTG 2 cut(s) 795, 984
TseFI GTSAC 4 cut(s) 349, 834, 967, 1060
TseI GCWGC 3 cut(s) 552, 1050, 1181
Tsp45I GTSAC 4 cut(s) 349, 834, 967, 1060
TspDTI ATGAA 1 cut(s) 1209
TspGWI ACGGA 5 cut(s) 79, 388, 427, 514, 922
TspMI CCCGGG 1 cut(s) 1154
TspRI CASTG 2 cut(s) 795, 984
VpaK11BI GGWCC 4 cut(s) 451, 657, 859, 1076
XhoI CTCGAG 2 cut(s) 296, 839
XmaI CCCGGG 1 cut(s) 1154
XspI CTAG 1 cut(s) 650
ZraI GACGTC 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.