Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028469.1

Orthogroup ID

OG0015283

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 636

Gene Structure 635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028469.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 635 bp

gacttcacctccctcctctccgccgccatcttctcagatctctccctccgctcctccctcaccctcctcgccgtccctaacactttcctctcctccacctccgacctcacgcgccacctctccccttcctcacgcgccgacgtcctccgctaccacgtcctcctcgagtatctctccctctccgacctcgccagcatccccccttcgggaaaactcgtcaccactctctaccagaccaccggacgcgccaccaacgacttcggctcagtcaatctcacgcgcgacccgaccaccgggatcgtctccgtccgctcccccgccaccttctccccctcaaacgccaccgttttgggcctcgtcaagactcttccgtacaatgtcagcatcttttccgttaattccctccttgtcccttacggcttcgacctcatggcctccgagacccggccccctctgggcctcaacatcaccaaggccctgatcgacggccacaacttcaacgtcgcggcctccatgctcgccgcatccggcgtcgtcgaggaattcgaggccgacgagggcggcgccggaatcactctcttcgtccctactgacactgccttctccgacctccccgcaaacgtgaggctccaatc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001871 GO:0003006 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006970 GO:0007155 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009651 GO:0009791 GO:0009825 GO:0009897 GO:0009986 GO:0009987 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0016020 GO:0016049 GO:0022414 GO:0022610 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0040007 GO:0044237 GO:0044249 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0048316 GO:0048354 GO:0048359 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071944 GO:0098552

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

212

Amino Acids

22.44

Weight (kDa)

4.88

Isoelectric Point (pI)

42.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46550
fragaria_vesca	FvH4_3g36000
malus_domestica	MD11G1109900.v1.1
prunus_persica	Prupe.6G078300_v2.0.a1
pyrus_communis	pycom03g07740 pycom11g09060
rosa_chinensis	RchiOBHm_Chr5g0064411
rosa_laevigata	RLG00000035721
rosa_multiflora	Rmu_sc0001367.1_g000002 Rmu_sc0028469.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016600
rosa_rugosa	Rorug05G0364400
rosa_samantha	Rh5AG422900 Rh5BG438600 Rh5CG461300 Rh5DG451800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	144
AccB1I	GGYRCC	1 cut(s)	563
AccBSI	CCGCTC	2 cut(s)	51, 312
AccII	CGCG	6 cut(s)	112, 135, 246, 280, 282, 506
AclWI	GGATC	1 cut(s)	305
AcoI	YGGCCR	1 cut(s)	487
AcsI	RAATTY	1 cut(s)	542
AcyI	GRCGYC	3 cut(s)	141, 531, 564
AfaI	GTAC	1 cut(s)	374
AfiI	CCNNNNNNNGG	5 cut(s)	205, 206, 293, 444, 455
AgsI	TTSAA	1 cut(s)	499
AjiI	CACGTC	1 cut(s)	157
Alw26I	GTCTC	2 cut(s)	307, 434
AlwI	GGATC	1 cut(s)	305
Ama87I	CYCGRG	1 cut(s)	164
AoxI	GGCC	8 cut(s)	352, 432, 446, 457, 474, 487, 507, 549
ApoI	RAATTY	1 cut(s)	542
AspLEI	GCGC	5 cut(s)	114, 137, 248, 282, 566
AspS9I	GGNCC	4 cut(s)	352, 447, 457, 475
AsuC2I	CCSGG	2 cut(s)	295, 445
AsuHPI	GGTGA	3 cut(s)	52, 211, 460
AvaI	CYCGRG	1 cut(s)	164
BanI	GGYRCC	1 cut(s)	563
BccI	CCATC	1 cut(s)	35
BceAI	ACGGC	3 cut(s)	56, 433, 502
BcnI	CCSGG	2 cut(s)	295, 445
BcoDI	GTCTC	2 cut(s)	307, 434
BfoI	RGCGCY	1 cut(s)	567
BglII	AGATCT	1 cut(s)	37
BisI	GCNGC	4 cut(s)	24, 507, 522, 562
BlsI	GCNGC	4 cut(s)	25, 508, 523, 563
Bme1390I	CCNGG	2 cut(s)	295, 445
BmeT110I	CYCGRG	1 cut(s)	164
BmgBI	CACGTC	1 cut(s)	157
BmgT120I	GGNCC	4 cut(s)	352, 447, 457, 475
BmiI	GGNNCC	3 cut(s)	449, 565, 629
BmrFI	CCNGG	2 cut(s)	295, 445
BmsI	GCATC	3 cut(s)	204, 393, 533
BplI	GAGNNNNNCTC	2 cut(s)	158, 190
BpuMI	CCSGG	2 cut(s)	295, 445
BsaHI	GRCGYC	3 cut(s)	141, 531, 564
BsaI	GGTCTC	1 cut(s)	434
BsaJI	CCNNGG	1 cut(s)	471
BsaWI	WCCGGW	1 cut(s)	239
BsaXI	ACNNNNNCTCC	1 cut(s)	23
Bsc4I	CCNNNNNNNGG	5 cut(s)	205, 206, 293, 444, 455
BseDI	CCNNGG	1 cut(s)	471
BseGI	GGATG	2 cut(s)	195, 524
BseLI	CCNNNNNNNGG	5 cut(s)	205, 206, 293, 444, 455
BseMII	CTCAG	2 cut(s)	48, 279
BseRI	GAGGAG	5 cut(s)	5, 43, 56, 82, 152
Bsh1236I	CGCG	6 cut(s)	112, 135, 246, 280, 282, 506
BshFI	GGCC	8 cut(s)	354, 434, 448, 459, 476, 489, 509, 551
BshNI	GGYRCC	1 cut(s)	563
BsiHKCI	CYCGRG	1 cut(s)	164
BsiSI	CCGG	5 cut(s)	240, 294, 445, 528, 567
BslFI	GGGAC	3 cut(s)	59, 395, 569
BslI	CCNNNNNNNGG	5 cut(s)	205, 206, 293, 444, 455
BsmAI	GTCTC	2 cut(s)	307, 434
BsmBI	CGTCTC	1 cut(s)	307
BsmFI	GGGAC	3 cut(s)	59, 395, 569
BsnI	GGCC	8 cut(s)	354, 434, 448, 459, 476, 489, 509, 551
Bso31I	GGTCTC	1 cut(s)	434
BsoBI	CYCGRG	1 cut(s)	164
Bsp143I	GATC	3 cut(s)	37, 297, 480
BspANI	GGCC	8 cut(s)	354, 434, 448, 459, 476, 489, 509, 551
BspCNI	CTCAG	2 cut(s)	47, 278
BspFNI	CGCG	6 cut(s)	112, 135, 246, 280, 282, 506
BspLI	GGNNCC	3 cut(s)	449, 565, 629
BspPI	GGATC	1 cut(s)	305
BspT107I	GGYRCC	1 cut(s)	563
BspTNI	GGTCTC	1 cut(s)	434
BsrBI	CCGCTC	2 cut(s)	51, 312
BssECI	CCNNGG	1 cut(s)	471
BssMI	GATC	3 cut(s)	37, 297, 480
BssNI	GRCGYC	3 cut(s)	141, 531, 564
BssT1I	CCWWGG	1 cut(s)	471
Bst4CI	ACNGT	1 cut(s)	346
Bst6I	CTCTTC	2 cut(s)	372, 584
BstACI	GRCGYC	3 cut(s)	141, 531, 564
BstC8I	GCNNGC	2 cut(s)	193, 519
BstDEI	CTNAG	2 cut(s)	34, 265
BstF5I	GGATG	2 cut(s)	195, 524
BstFNI	CGCG	6 cut(s)	112, 135, 246, 280, 282, 506
BstH2I	RGCGCY	1 cut(s)	567
BstHHI	GCGC	5 cut(s)	114, 137, 248, 282, 566
BstKTI	GATC	3 cut(s)	40, 300, 483
BstMAI	GTCTC	2 cut(s)	307, 434
BstMBI	GATC	3 cut(s)	37, 297, 480
BstSCI	CCNGG	2 cut(s)	293, 443
BstUI	CGCG	6 cut(s)	112, 135, 246, 280, 282, 506
BstX2I	RGATCY	1 cut(s)	37
BstXI	CCANNNNNNTGG	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	37
BsuRI	GGCC	8 cut(s)	354, 434, 448, 459, 476, 489, 509, 551
BtrI	CACGTC	1 cut(s)	157
BtsCI	GGATG	2 cut(s)	195, 524
BtsI	GCAGTG	1 cut(s)	594
BtsIMutI	CAGTG	1 cut(s)	594
Cac8I	GCNNGC	2 cut(s)	193, 519
CfoI	GCGC	5 cut(s)	114, 137, 248, 282, 566
Cfr13I	GGNCC	4 cut(s)	352, 447, 457, 475
CseI	GACGC	2 cut(s)	252, 520
Csp6I	GTAC	1 cut(s)	373
CviAII	CATG	2 cut(s)	430, 514
CviQI	GTAC	1 cut(s)	373
DdeI	CTNAG	2 cut(s)	34, 265
DinI	GGCGCC	1 cut(s)	565
DpnI	GATC	3 cut(s)	39, 299, 482
DpnII	GATC	3 cut(s)	37, 297, 480
EaeI	YGGCCR	1 cut(s)	487
Eam1104I	CTCTTC	2 cut(s)	372, 584
EarI	CTCTTC	2 cut(s)	372, 584
EciI	GGCGGA	1 cut(s)	10
Eco130I	CCWWGG	1 cut(s)	471
Eco31I	GGTCTC	1 cut(s)	434
Eco88I	CYCGRG	1 cut(s)	164
EcoO109I	RGGNCCY	1 cut(s)	475
EcoRI	GAATTC	1 cut(s)	542
EcoT14I	CCWWGG	1 cut(s)	471
EgeI	GGCGCC	1 cut(s)	565
EheI	GGCGCC	1 cut(s)	565
ErhI	CCWWGG	1 cut(s)	471
Esp3I	CGTCTC	1 cut(s)	307
FaeI	CATG	2 cut(s)	433, 517
FaiI	YATR	2 cut(s)	431, 515
FaqI	GGGAC	3 cut(s)	59, 395, 569
FatI	CATG	2 cut(s)	429, 513
FauI	CCCGC	2 cut(s)	325, 622
Fnu4HI	GCNGC	4 cut(s)	24, 507, 522, 562
FokI	GGATG	2 cut(s)	182, 511
Fsp4HI	GCNGC	4 cut(s)	24, 507, 522, 562
GlaI	GCGC	5 cut(s)	113, 136, 247, 281, 565
GluI	GCNGC	4 cut(s)	24, 507, 522, 562
HaeII	RGCGCY	1 cut(s)	567
HaeIII	GGCC	8 cut(s)	354, 434, 448, 459, 476, 489, 509, 551
HapII	CCGG	5 cut(s)	240, 294, 445, 528, 567
HgaI	GACGC	2 cut(s)	252, 520
HhaI	GCGC	5 cut(s)	114, 137, 248, 282, 566
Hin1I	GRCGYC	3 cut(s)	141, 531, 564
Hin1II	CATG	2 cut(s)	433, 517
Hin6I	GCGC	5 cut(s)	112, 135, 246, 280, 564
HinP1I	GCGC	5 cut(s)	112, 135, 246, 280, 564
HinfI	GANTC	2 cut(s)	364, 570
HpaII	CCGG	5 cut(s)	240, 294, 445, 528, 567
HphI	GGTGA	3 cut(s)	52, 211, 460
Hpy188I	TCNGA	5 cut(s)	37, 103, 184, 439, 607
Hpy188III	TCNNGA	2 cut(s)	207, 361
Hpy99I	CGWCG	6 cut(s)	143, 488, 506, 536, 539, 557
HpyAV	CCTTC	4 cut(s)	135, 213, 334, 610
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4IV	ACGT	4 cut(s)	141, 156, 501, 621
HpyF3I	CTNAG	2 cut(s)	34, 265
HpySE526I	ACGT	4 cut(s)	141, 156, 501, 621
Hsp92I	GRCGYC	3 cut(s)	141, 531, 564
Hsp92II	CATG	2 cut(s)	433, 517
HspAI	GCGC	5 cut(s)	112, 135, 246, 280, 564
KasI	GGCGCC	1 cut(s)	563
Kzo9I	GATC	3 cut(s)	37, 297, 480
LmnI	GCTCC	3 cut(s)	56, 317, 633
LpnPI	CCDG	9 cut(s)	205, 245, 253, 307, 440, 458, 491, 541, 580
LweI	GCATC	3 cut(s)	204, 393, 533
MaeII	ACGT	4 cut(s)	141, 156, 501, 621
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	3 cut(s)	39, 299, 482
MbiI	CCGCTC	2 cut(s)	51, 312
MboI	GATC	3 cut(s)	37, 297, 480
MboII	GAAGA	3 cut(s)	22, 359, 571
MflI	RGATCY	1 cut(s)	37
MluCI	AATT	2 cut(s)	397, 542
Mly113I	GGCGCC	1 cut(s)	564
MlyI	GAGTC	1 cut(s)	358
MmeI	TCCRAC	3 cut(s)	126, 207, 630
MseI	TTAA	1 cut(s)	396
MspI	CCGG	5 cut(s)	240, 294, 445, 528, 567
MspR9I	CCNGG	2 cut(s)	295, 445
MvnI	CGCG	6 cut(s)	112, 135, 246, 280, 282, 506
NarI	GGCGCC	1 cut(s)	564
NciI	CCSGG	2 cut(s)	295, 445
NdeII	GATC	3 cut(s)	37, 297, 480
NlaIII	CATG	2 cut(s)	433, 517
NlaIV	GGNNCC	3 cut(s)	449, 565, 629
NmuCI	GTSAC	1 cut(s)	217
PaeR7I	CTCGAG	1 cut(s)	164
PcsI	WCGNNNNNNNCGW	4 cut(s)	162, 284, 543, 552
PfeI	GAWTC	1 cut(s)	570
PkrI	GCNGC	4 cut(s)	25, 508, 523, 563
PleI	GAGTC	1 cut(s)	358
PluTI	GGCGCC	1 cut(s)	567
PpsI	GAGTC	1 cut(s)	358
PspN4I	GGNNCC	3 cut(s)	449, 565, 629
PspPI	GGNCC	4 cut(s)	352, 447, 457, 475
PspXI	VCTCGAGB	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	37
RsaI	GTAC	1 cut(s)	374
RsaNI	GTAC	1 cut(s)	373
SaqAI	TTAA	1 cut(s)	396
SatI	GCNGC	4 cut(s)	24, 507, 522, 562
Sau3AI	GATC	3 cut(s)	37, 297, 480
Sau96I	GGNCC	4 cut(s)	352, 447, 457, 475
SchI	GAGTC	1 cut(s)	358
ScrFI	CCNGG	2 cut(s)	295, 445
SfaNI	GCATC	3 cut(s)	204, 393, 533
SfoI	GGCGCC	1 cut(s)	565
Sfr274I	CTCGAG	1 cut(s)	164
SlaI	CTCGAG	1 cut(s)	164
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	2 cut(s)	397, 542
SspDI	GGCGCC	1 cut(s)	563
StyD4I	CCNGG	2 cut(s)	293, 443
StyI	CCWWGG	1 cut(s)	471
TaaI	ACNGT	1 cut(s)	346
TaiI	ACGT	4 cut(s)	144, 159, 504, 624
TaqI	TCGA	5 cut(s)	165, 423, 483, 537, 546
TasI	AATT	2 cut(s)	397, 542
TauI	GCSGC	4 cut(s)	26, 509, 524, 564
TfiI	GAWTC	1 cut(s)	570
Tru1I	TTAA	1 cut(s)	396
Tru9I	TTAA	1 cut(s)	396
TscAI	CASTG	1 cut(s)	601
TseFI	GTSAC	1 cut(s)	217
Tsp45I	GTSAC	1 cut(s)	217
TspGWI	ACGGA	3 cut(s)	295, 360, 382
TspRI	CASTG	1 cut(s)	601
XapI	RAATTY	1 cut(s)	542
XhoI	CTCGAG	1 cut(s)	164
ZraI	GACGTC	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.