Rh5BG438600

Fasciclin-like arabinogalactan protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
70661220 .. 70663635
2416 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG438600.1

Sequence Viewer

Length: 1260 bp
ATGGCCTTTACATCCCCAAATCCCCATTTTACCCCTACCCATTTCCTCTATTTCCTCCTCCTCACTTCCTCTCTCCCCTTTACTCTTTCCATCAACATCACCGCTCTCCTCTCCCCCTTCCCCGACCTCTCCGACTTCACCTCCCTCCTCTCCGCCGCCATCTTCTCAGATCTCTCCCTCCGCTCCTCCCTCACCCTCCTCGCCGTCCCTAACCCTTTCCTCTCCTCCACCTCCGACCTCACGCGCCACCTCTCCCCCTCCTCACGCGCCGACGTTCTCCGCTACCACGTCCTCCTCGAGTACCTCTCCCTCTCCGACCTCGCCCGCATCCCCCCTTCGGGAAAACTCGTCACCACTCTCTACCAGACCACCGGACGCGCCACCAACGACTTCGGCTCAGTCAATCTCACGCGCGACCCGACCACCGGGATCGTCTCCGTCCGCTCCCCCGCCACCTTCTCCCCTTCAAACGCCACCGTTTTGGGCCTCGTCAAGACTCTTCCGTACAATGTCAGCATCTTTTCCGTTAATTCCCTCCTTGTCCCTTACGGCTTCGACCTCATGGCCTCCGAGACCCGGCCCCCTCTGGGCCTCAACATCACCAAGGCCCTGATCGACGGCCACAACTTCAACGTCGCGGCCTCCATGCTCGCCGCATCCGGCGTCGTCGAGGAATTCGAGGCCGACGAGGGCGGCGCCGGAATCACTCTCTTCGTCCCTACTGACACTGCCTTCTCCGACCTCCCCGCAAACGTGAGGCTCCAATCTCTCCCGGCGGATAAGAAATCGGTGGTGTTGAAGTTCCATGTGCTCCACTCCTACTACCCATTGGGCTCGCTCGAGTCGATTGTGAACCCGGTCCAGCCCACATTGGCTACAGAGCTGGTGGGAGCCGGTAGCTACACTCTCAACATCAGCAGAAACAACGGCTCCGTTTCAATCAACACCGGAATCATCCAGGCCTCGGTGACCCAGACGGTGTTCGATCAAAAGCCGGTGGCCATTTTCGGAGTTTCCAGGGTTTTGTTGCCGAAAGAGATTTTTGGGAGCACCCCGGCTGTCACATCCAGGCCCGGGACGCCAGTTTCCGGCGGGGCTGAGACGCCGGACAGTGCTCCGTCACCGGACAATTCGATGAGTGGGCAGGAACTCTCTTCGCCGCCCGGTTTTAAGGAGATAAAATCCGAGGGTGCTGCCATTACTGGGCTGTGGAGGTTGGGGGTTGCTTCATGTTGTATAGCATTGTATGTAATGGTATGA

Protein Analysis

419

Amino Acids

44.34

Weight (kDa)

5.64

Isoelectric Point (pI)

44.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 209 - 344 5.5e-18 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015283)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 695
AccBSI CCGCTC 3 cut(s) 104, 183, 444
AccII CGCG 6 cut(s) 244, 267, 378, 412, 414, 638
AclWI GGATC 1 cut(s) 437
AcoI YGGCCR 2 cut(s) 619, 999
AcsI RAATTY 1 cut(s) 674
AcyI GRCGYC 4 cut(s) 663, 696, 1079, 1103
AfaI GTAC 2 cut(s) 302, 506
AfiI CCNNNNNNNGG 9 cut(s) 337, 338, 425, 576, 587, 964, 1074, 1088, 1203
AgsI TTSAA 4 cut(s) 468, 631, 799, 939
AjiI CACGTC 1 cut(s) 289
AjnI CCWGG 3 cut(s) 957, 1016, 1067
AluBI AGCT 2 cut(s) 883, 900
AluI AGCT 2 cut(s) 883, 900
Alw21I GWGCWC 3 cut(s) 813, 1052, 1117
Alw26I GTCTC 3 cut(s) 439, 566, 1094
AlwI GGATC 1 cut(s) 437
Ama87I CYCGRG 3 cut(s) 296, 839, 1073
ApeKI GCWGC 1 cut(s) 1193
ApoI RAATTY 1 cut(s) 674
AspLEI GCGC 5 cut(s) 246, 269, 380, 414, 698
AspS9I GGNCC 6 cut(s) 484, 579, 589, 607, 859, 1071
AsuC2I CCSGG 8 cut(s) 427, 577, 773, 857, 1055, 1074, 1075, 1164
AsuHPI GGTGA 7 cut(s) 91, 130, 184, 343, 592, 979, 1113
AvaI CYCGRG 3 cut(s) 296, 839, 1073
AvaII GGWCC 1 cut(s) 859
BalI TGGCCA 1 cut(s) 1001
BanI GGYRCC 1 cut(s) 695
BanII GRGCYC 1 cut(s) 836
Bbv12I GWGCWC 3 cut(s) 813, 1052, 1117
BbvI GCAGC 1 cut(s) 1180
BccI CCATC 2 cut(s) 98, 167
BceAI ACGGC 4 cut(s) 188, 565, 634, 943
BcgI CGANNNNNNTGC 2 cut(s) 1175, 1209
BciT130I CCWGG 3 cut(s) 959, 1018, 1069
BcnI CCSGG 8 cut(s) 427, 577, 773, 857, 1055, 1074, 1075, 1164
BcoDI GTCTC 3 cut(s) 439, 566, 1094
BfmI CTRYAG 1 cut(s) 876
BfoI RGCGCY 1 cut(s) 699
BglII AGATCT 1 cut(s) 169
BisI GCNGC 6 cut(s) 156, 639, 654, 694, 1160, 1194
BlsI GCNGC 6 cut(s) 157, 640, 655, 695, 1161, 1195
Bme18I GGWCC 1 cut(s) 859
BmeT110I CYCGRG 3 cut(s) 296, 839, 1073
BmgBI CACGTC 1 cut(s) 289
BmgT120I GGNCC 6 cut(s) 484, 579, 589, 607, 859, 1071
BmiI GGNNCC 5 cut(s) 581, 697, 761, 892, 931
BmrI ACTGGG 1 cut(s) 1212
BmsI GCATC 3 cut(s) 336, 525, 665
BmuI ACTGGG 1 cut(s) 1212
BplI GAGNNNNNCTC 2 cut(s) 290, 322
BpuMI CCSGG 8 cut(s) 427, 577, 773, 857, 1055, 1074, 1075, 1164
BsaHI GRCGYC 4 cut(s) 663, 696, 1079, 1103
BsaI GGTCTC 1 cut(s) 566
BsaJI CCNNGG 6 cut(s) 603, 963, 1017, 1053, 1073, 1185
BsaWI WCCGGW 3 cut(s) 371, 947, 1123
BsaXI ACNNNNNCTCC 4 cut(s) 125, 155, 914, 944
Bsc4I CCNNNNNNNGG 9 cut(s) 337, 338, 425, 576, 587, 964, 1074, 1088, 1203
Bse118I RCCGGY 2 cut(s) 893, 994
Bse1I ACTGG 2 cut(s) 1082, 1207
BseBI CCWGG 3 cut(s) 959, 1018, 1069
BseDI CCNNGG 6 cut(s) 603, 963, 1017, 1053, 1073, 1185
BseGI GGATG 5 cut(s) 11, 327, 656, 954, 1064
BseLI CCNNNNNNNGG 9 cut(s) 337, 338, 425, 576, 587, 964, 1074, 1088, 1203
BseMII CTCAG 3 cut(s) 180, 411, 1089
BseNI ACTGG 2 cut(s) 1082, 1207
BseRI GAGGAG 9 cut(s) 47, 50, 98, 137, 175, 188, 214, 250, 284
BseXI GCAGC 1 cut(s) 1180
Bsh1236I CGCG 6 cut(s) 244, 267, 378, 412, 414, 638
BshNI GGYRCC 1 cut(s) 695
BsiHKAI GWGCWC 3 cut(s) 813, 1052, 1117
BsiHKCI CYCGRG 3 cut(s) 296, 839, 1073
BslFI GGGAC 4 cut(s) 191, 527, 701, 1090
BslI CCNNNNNNNGG 9 cut(s) 337, 338, 425, 576, 587, 964, 1074, 1088, 1203
BsmAI GTCTC 3 cut(s) 439, 566, 1094
BsmBI CGTCTC 2 cut(s) 439, 1094
BsmFI GGGAC 4 cut(s) 191, 527, 701, 1090
Bso31I GGTCTC 1 cut(s) 566
BsoBI CYCGRG 3 cut(s) 296, 839, 1073
Bsp1286I GDGCHC 4 cut(s) 813, 836, 1052, 1117
Bsp143I GATC 4 cut(s) 169, 429, 612, 985
BspCNI CTCAG 3 cut(s) 179, 410, 1090
BspFNI CGCG 6 cut(s) 244, 267, 378, 412, 414, 638
BspLI GGNNCC 5 cut(s) 581, 697, 761, 892, 931
BspPI GGATC 1 cut(s) 437
BspT107I GGYRCC 1 cut(s) 695
BspTNI GGTCTC 1 cut(s) 566
BsrBI CCGCTC 3 cut(s) 104, 183, 444
BsrFI RCCGGY 2 cut(s) 893, 994
BsrI ACTGG 2 cut(s) 1082, 1207
BssAI RCCGGY 2 cut(s) 893, 994
BssECI CCNNGG 6 cut(s) 603, 963, 1017, 1053, 1073, 1185
BssMI GATC 4 cut(s) 169, 429, 612, 985
BssNI GRCGYC 4 cut(s) 663, 696, 1079, 1103
BssT1I CCWWGG 1 cut(s) 603
Bst2UI CCWGG 3 cut(s) 959, 1018, 1069
Bst4CI ACNGT 3 cut(s) 478, 979, 1112
Bst6I CTCTTC 3 cut(s) 504, 716, 1159
BstACI GRCGYC 4 cut(s) 663, 696, 1079, 1103
BstC8I GCNNGC 3 cut(s) 325, 651, 836
BstDEI CTNAG 3 cut(s) 166, 397, 1098
BstEII GGTNACC 1 cut(s) 967
BstF5I GGATG 5 cut(s) 11, 327, 656, 954, 1064
BstFNI CGCG 6 cut(s) 244, 267, 378, 412, 414, 638
BstH2I RGCGCY 1 cut(s) 699
BstHHI GCGC 5 cut(s) 246, 269, 380, 414, 698
BstKTI GATC 4 cut(s) 172, 432, 615, 988
BstMAI GTCTC 3 cut(s) 439, 566, 1094
BstMBI GATC 4 cut(s) 169, 429, 612, 985
BstMWI GCNNNNNNNGC 1 cut(s) 1078
BstNI CCWGG 3 cut(s) 959, 1018, 1069
BstPI GGTNACC 1 cut(s) 967
BstSFI CTRYAG 1 cut(s) 876
BstUI CGCG 6 cut(s) 244, 267, 378, 412, 414, 638
BstV1I GCAGC 1 cut(s) 1180
BstX2I RGATCY 1 cut(s) 169
BstXI CCANNNNNNTGG 1 cut(s) 481
BstYI RGATCY 1 cut(s) 169
BtrI CACGTC 1 cut(s) 289
BtsCI GGATG 5 cut(s) 11, 327, 656, 954, 1064
BtsI GCAGTG 1 cut(s) 726
BtsIMutI CAGTG 2 cut(s) 726, 1117
Cac8I GCNNGC 3 cut(s) 325, 651, 836
CfoI GCGC 5 cut(s) 246, 269, 380, 414, 698
Cfr10I RCCGGY 2 cut(s) 893, 994
Cfr13I GGNCC 6 cut(s) 484, 579, 589, 607, 859, 1071
Cfr9I CCCGGG 1 cut(s) 1073
CseI GACGC 4 cut(s) 384, 652, 1087, 1111
Csp6I GTAC 2 cut(s) 301, 505
CviAII CATG 4 cut(s) 562, 646, 806, 1230
CviQI GTAC 2 cut(s) 301, 505
DdeI CTNAG 3 cut(s) 166, 397, 1098
DinI GGCGCC 1 cut(s) 697
DpnI GATC 4 cut(s) 171, 431, 614, 987
DpnII GATC 4 cut(s) 169, 429, 612, 985
EaeI YGGCCR 2 cut(s) 619, 999
Eam1104I CTCTTC 3 cut(s) 504, 716, 1159
EarI CTCTTC 3 cut(s) 504, 716, 1159
EciI GGCGGA 2 cut(s) 142, 791
Eco130I CCWWGG 1 cut(s) 603
Eco147I AGGCCT 1 cut(s) 962
Eco24I GRGCYC 1 cut(s) 836
Eco31I GGTCTC 1 cut(s) 566
Eco47I GGWCC 1 cut(s) 859
Eco88I CYCGRG 3 cut(s) 296, 839, 1073
Eco91I GGTNACC 1 cut(s) 967
EcoO109I RGGNCCY 1 cut(s) 607
EcoO65I GGTNACC 1 cut(s) 967
EcoRI GAATTC 1 cut(s) 674
EcoRII CCWGG 3 cut(s) 957, 1016, 1067
EcoT14I CCWWGG 1 cut(s) 603
EcoT38I GRGCYC 1 cut(s) 836
EgeI GGCGCC 1 cut(s) 697
EheI GGCGCC 1 cut(s) 697
ErhI CCWWGG 1 cut(s) 603
Esp3I CGTCTC 2 cut(s) 439, 1094
FaeI CATG 4 cut(s) 565, 649, 809, 1233
FaiI YATR 7 cut(s) 563, 647, 807, 1231, 1238, 1248, 1258
FaqI GGGAC 4 cut(s) 191, 527, 701, 1090
FatI CATG 4 cut(s) 561, 645, 805, 1229
FauI CCCGC 4 cut(s) 332, 457, 754, 1085
Fnu4HI GCNGC 6 cut(s) 156, 639, 654, 694, 1160, 1194
FokI GGATG 4 cut(s) 314, 643, 941, 1051
FriOI GRGCYC 1 cut(s) 836
Fsp4HI GCNGC 6 cut(s) 156, 639, 654, 694, 1160, 1194
GlaI GCGC 5 cut(s) 245, 268, 379, 413, 697
GluI GCNGC 6 cut(s) 156, 639, 654, 694, 1160, 1194
HaeII RGCGCY 1 cut(s) 699
HgaI GACGC 4 cut(s) 384, 652, 1087, 1111
HhaI GCGC 5 cut(s) 246, 269, 380, 414, 698
Hin1I GRCGYC 4 cut(s) 663, 696, 1079, 1103
Hin1II CATG 4 cut(s) 565, 649, 809, 1233
Hin6I GCGC 5 cut(s) 244, 267, 378, 412, 696
HinP1I GCGC 5 cut(s) 244, 267, 378, 412, 696
HinfI GANTC 4 cut(s) 496, 702, 842, 951
HphI GGTGA 7 cut(s) 91, 130, 184, 343, 592, 979, 1113
Hpy166II GTNNAC 1 cut(s) 853
Hpy188I TCNGA 8 cut(s) 133, 169, 235, 316, 571, 739, 1010, 1186
Hpy188III TCNNGA 2 cut(s) 339, 493
Hpy8I GTNNAC 1 cut(s) 853
Hpy99I CGWCG 6 cut(s) 275, 620, 638, 668, 671, 689
HpyAV CCTTC 5 cut(s) 127, 345, 466, 474, 742
HpyCH4III ACNGT 3 cut(s) 478, 979, 1112
HpyCH4IV ACGT 4 cut(s) 273, 288, 633, 753
HpyF10VI GCNNNNNNNGC 1 cut(s) 1078
HpyF3I CTNAG 3 cut(s) 166, 397, 1098
HpySE526I ACGT 4 cut(s) 273, 288, 633, 753
Hsp92I GRCGYC 4 cut(s) 663, 696, 1079, 1103
Hsp92II CATG 4 cut(s) 565, 649, 809, 1233
HspAI GCGC 5 cut(s) 244, 267, 378, 412, 696
KasI GGCGCC 1 cut(s) 695
Kzo9I GATC 4 cut(s) 169, 429, 612, 985
LmnI GCTCC 8 cut(s) 188, 449, 765, 816, 890, 935, 1047, 1120
Lsp1109I GCAGC 1 cut(s) 1180
LweI GCATC 3 cut(s) 336, 525, 665
MaeII ACGT 4 cut(s) 273, 288, 633, 753
MaeIII GTNAC 4 cut(s) 349, 967, 1060, 1119
MalI GATC 4 cut(s) 171, 431, 614, 987
MbiI CCGCTC 3 cut(s) 104, 183, 444
MboI GATC 4 cut(s) 169, 429, 612, 985
MboII GAAGA 4 cut(s) 154, 491, 703, 1146
MflI RGATCY 1 cut(s) 169
MhlI GDGCHC 4 cut(s) 813, 836, 1052, 1117
MlsI TGGCCA 1 cut(s) 1001
MluCI AATT 3 cut(s) 529, 674, 1129
MluNI TGGCCA 1 cut(s) 1001
Mly113I GGCGCC 1 cut(s) 696
MlyI GAGTC 2 cut(s) 490, 851
MmeI TCCRAC 4 cut(s) 156, 258, 339, 762
Mox20I TGGCCA 1 cut(s) 1001
MscI TGGCCA 1 cut(s) 1001
MseI TTAA 2 cut(s) 528, 1170
Msp20I TGGCCA 1 cut(s) 1001
MvaI CCWGG 3 cut(s) 959, 1018, 1069
MvnI CGCG 6 cut(s) 244, 267, 378, 412, 414, 638
MwoI GCNNNNNNNGC 1 cut(s) 1078
NarI GGCGCC 1 cut(s) 696
NciI CCSGG 8 cut(s) 427, 577, 773, 857, 1055, 1074, 1075, 1164
NdeII GATC 4 cut(s) 169, 429, 612, 985
NlaIII CATG 4 cut(s) 565, 649, 809, 1233
NlaIV GGNNCC 5 cut(s) 581, 697, 761, 892, 931
NmuCI GTSAC 4 cut(s) 349, 967, 1060, 1119
PaeR7I CTCGAG 2 cut(s) 296, 839
PceI AGGCCT 1 cut(s) 962
PcsI WCGNNNNNNNCGW 5 cut(s) 294, 416, 675, 684, 842
PfeI GAWTC 2 cut(s) 702, 951
PkrI GCNGC 6 cut(s) 157, 640, 655, 695, 1161, 1195
PleI GAGTC 2 cut(s) 490, 850
PluTI GGCGCC 1 cut(s) 699
PpsI GAGTC 2 cut(s) 490, 850
Psp6I CCWGG 3 cut(s) 957, 1016, 1067
PspEI GGTNACC 1 cut(s) 967
PspGI CCWGG 3 cut(s) 957, 1016, 1067
PspN4I GGNNCC 5 cut(s) 581, 697, 761, 892, 931
PspPI GGNCC 6 cut(s) 484, 579, 589, 607, 859, 1071
PspXI VCTCGAGB 2 cut(s) 296, 839
PsuI RGATCY 1 cut(s) 169
RsaI GTAC 2 cut(s) 302, 506
RsaNI GTAC 2 cut(s) 301, 505
SaqAI TTAA 2 cut(s) 528, 1170
SatI GCNGC 6 cut(s) 156, 639, 654, 694, 1160, 1194
Sau3AI GATC 4 cut(s) 169, 429, 612, 985
Sau96I GGNCC 6 cut(s) 484, 579, 589, 607, 859, 1071
SchI GAGTC 2 cut(s) 490, 851
SduI GDGCHC 4 cut(s) 813, 836, 1052, 1117
SfaNI GCATC 3 cut(s) 336, 525, 665
SfcI CTRYAG 1 cut(s) 876
SfoI GGCGCC 1 cut(s) 697
Sfr274I CTCGAG 2 cut(s) 296, 839
SinI GGWCC 1 cut(s) 859
SlaI CTCGAG 2 cut(s) 296, 839
SmaI CCCGGG 1 cut(s) 1075
SmlI CTYRAG 2 cut(s) 296, 839
SmoI CTYRAG 2 cut(s) 296, 839
Sse9I AATT 3 cut(s) 529, 674, 1129
SseBI AGGCCT 1 cut(s) 962
SspDI GGCGCC 1 cut(s) 695
StuI AGGCCT 1 cut(s) 962
StyI CCWWGG 1 cut(s) 603
TaaI ACNGT 3 cut(s) 478, 979, 1112
TaiI ACGT 4 cut(s) 276, 291, 636, 756
TaqI TCGA 9 cut(s) 297, 555, 615, 669, 678, 840, 845, 984, 1133
TasI AATT 3 cut(s) 529, 674, 1129
TauI GCSGC 5 cut(s) 158, 641, 656, 696, 1162
TfiI GAWTC 2 cut(s) 702, 951
Tru1I TTAA 2 cut(s) 528, 1170
Tru9I TTAA 2 cut(s) 528, 1170
TscAI CASTG 2 cut(s) 733, 1117
TseFI GTSAC 4 cut(s) 349, 967, 1060, 1119
TseI GCWGC 1 cut(s) 1193
Tsp45I GTSAC 4 cut(s) 349, 967, 1060, 1119
TspDTI ATGAA 1 cut(s) 1218
TspGWI ACGGA 5 cut(s) 427, 492, 514, 922, 1107
TspMI CCCGGG 1 cut(s) 1073
TspRI CASTG 2 cut(s) 733, 1117
VpaK11BI GGWCC 1 cut(s) 859
XapI RAATTY 1 cut(s) 674
XhoI CTCGAG 2 cut(s) 296, 839
XmaI CCCGGG 1 cut(s) 1073
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.