pycom03g07740

Fasciclin-like arabinogalactan protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Forward (+)
6132163 .. 6133428
1266 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g07740.1

Sequence Viewer

Length: 1266 bp
ATGGCCAATACATTTCCCACTTCCCATCGTACCCCTACAGCCCTCCTCTATTTCCTCCTCCTTCTCTCCTCGTCCTCCATCCACGCCCTCAACATCTCCACCCTCCTCTCCCCCTTTCCCGACCTCTCCTCCTTCGCCTCCCTCCTCAACTCCTCCATCTCCTCTGACCTCCTCCCCCGCTCCTCCCTCACCCTCCTCGCCGTCCCCAATTCTTTCGTCTCCTCCACCTCTTACCTCACGCGCCGCCTCTCCCCTTCCTCACGTGCCGACGTCCTCCGCTACCACGTCCTCCTCGAGTACCTCTCCCCTTCCGACCTCCTCCGCCTCCCTCCCTCTGGCAAGCTCGTCACCACCCTATTCCAAACCACCGGCCACGCCACCAGCAACTTCGGCTCCGTCAACCTCACCCGCGACCCCTCTACCGGCGTCGTCTCGATCCACTCCCCGGGCCCCTTCTCCCCCTCGAACGCCACCGTTTTATCCCTCGTCACAAACCTCCCGTACAATGTCTCCATCTTTTCCGTTAATTCCCTTTTAGTCCCCTACGGATTCGACCTCATGGCCTCCGAGACCCGCCCGCCACTCGGCCTCAACATCACCAAGGCCCTCATCGACGGCCACAATTTCAACGTCGCAGCCTCCATGCTCGCAGCATCCGGCGTCGTCGAGGAGTTCGAGGCCGACGAGGGCGGCCCCGGAATCACCCTCTTCGTCCCTACTGACACCGCGTTCTCCAATCTCCCATCCACCGTCCGCCTCCAGTCCCTCCCGGCCGACAAAAAAGCGGTAGTTCTCAAATTCCACGTCATCCACTCCTACTACCCGCTCGGTTCGCTCGAGTCGATTGTGAACCCGGTCCAGCCCACATTGGCCACGGACGACGGCGGAGCCACGTCGTACACTCTCAACATTAGCAGAATAAACGGCTCAATGGTGATCAGCACCGGGATCGTCCAGGCCATGGTCACCCAGACGGTATTCGACCAAAAGCCCGTGTCAATTTTCGGGGTTTCGGCGGTTTTATTGCCCAAGGAGATATTCGGGAAAACCCCGGTTTTTGCAAAACCCGGGTCTCCCTTAGCGGGGGCTCCTCCCCCCTACATTGCCCTGTCGCCGGAGAGCCTCAATGAGCCTCCGTCGAACCTCTCTTCGCCGCCGGACTTTCGCGAAGAGATCGGATCGGATGCTGCTGCTGCTGGTGCAATCAATGGGTTGCGGAGCTTGTGGATTGCATCTTGTTGTATAGGATTGTATTTAATGGTATGA

Protein Analysis

422

Amino Acids

44.49

Weight (kDa)

5.89

Isoelectric Point (pI)

50.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 208 - 343 1.5e-15 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0015283)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 273
AccB7I CCANNNNNTGG 1 cut(s) 961
AccBSI CCGCTC 2 cut(s) 180, 826
AccII CGCG 4 cut(s) 241, 411, 728, 1167
AclWI GGATC 3 cut(s) 430, 956, 1186
AcoI YGGCCR 5 cut(s) 3, 370, 616, 771, 870
AcsI RAATTY 1 cut(s) 797
AcvI CACGTG 1 cut(s) 263
AcyI GRCGYC 3 cut(s) 270, 426, 660
AfaI GTAC 4 cut(s) 31, 299, 503, 899
AfiI CCNNNNNNNGG 8 cut(s) 335, 422, 445, 584, 961, 1082, 1083, 1114
AgsI TTSAA 1 cut(s) 628
AjiI CACGTC 3 cut(s) 286, 805, 894
AjnI CCWGG 1 cut(s) 954
AjuI GAANNNNNNNTTGG 2 cut(s) 1022, 1054
AluBI AGCT 2 cut(s) 343, 1221
AluI AGCT 2 cut(s) 343, 1221
Alw26I GTCTC 5 cut(s) 223, 436, 514, 563, 1077
AlwI GGATC 3 cut(s) 430, 956, 1186
Ama87I CYCGRG 4 cut(s) 293, 445, 836, 1067
ApaI GGGCCC 1 cut(s) 452
ApeKI GCWGC 5 cut(s) 635, 650, 1187, 1190, 1193
ApoI RAATTY 1 cut(s) 797
ArsI GACNNNNNNTTYG 4 cut(s) 789, 821, 1055, 1087
AspLEI GCGC 1 cut(s) 243
AspS9I GGNCC 5 cut(s) 448, 449, 604, 692, 856
AsuC2I CCSGG 9 cut(s) 446, 447, 696, 770, 854, 946, 1052, 1068, 1069
AsuHPI GGTGA 7 cut(s) 181, 340, 397, 589, 694, 946, 958
AvaI CYCGRG 4 cut(s) 293, 445, 836, 1067
AvaII GGWCC 1 cut(s) 856
BaeGI GKGCMC 1 cut(s) 452
BalI TGGCCA 2 cut(s) 5, 872
BanII GRGCYC 2 cut(s) 452, 1090
BbrPI CACGTG 1 cut(s) 263
BbvI GCAGC 5 cut(s) 647, 662, 1174, 1177, 1180
BccI CCATC 5 cut(s) 33, 86, 164, 521, 751
BceAI ACGGC 4 cut(s) 185, 631, 898, 940
BcgI CGANNNNNNTGC 2 cut(s) 931, 965
BciT130I CCWGG 1 cut(s) 956
BclI TGATCA 1 cut(s) 936
BcnI CCSGG 9 cut(s) 446, 447, 696, 770, 854, 946, 1052, 1068, 1069
BcoDI GTCTC 5 cut(s) 223, 436, 514, 563, 1077
BfmI CTRYAG 1 cut(s) 36
BisI GCNGC 8 cut(s) 244, 636, 651, 691, 1154, 1188, 1191, 1194
BlsI GCNGC 8 cut(s) 245, 637, 652, 692, 1155, 1189, 1192, 1195
Bme18I GGWCC 1 cut(s) 856
BmeT110I CYCGRG 4 cut(s) 293, 445, 836, 1067
BmgBI CACGTC 3 cut(s) 286, 805, 894
BmgT120I GGNCC 5 cut(s) 448, 449, 604, 692, 856
BmiI GGNNCC 6 cut(s) 394, 450, 451, 694, 889, 1089
BmsI GCATC 3 cut(s) 662, 1174, 1241
BplI GAGNNNNNCTC 2 cut(s) 287, 319
BpmI CTGGAG 1 cut(s) 743
Bpu10I CCTNAGC 1 cut(s) 1078
BpuMI CCSGG 9 cut(s) 446, 447, 696, 770, 854, 946, 1052, 1068, 1069
BsaAI YACGTR 1 cut(s) 263
BsaHI GRCGYC 3 cut(s) 270, 426, 660
BsaI GGTCTC 2 cut(s) 563, 1077
BsaJI CCNNGG 9 cut(s) 444, 445, 600, 694, 873, 960, 1029, 1050, 1067
BsaXI ACNNNNNCTCC 6 cut(s) 113, 143, 377, 407, 494, 524
Bsc4I CCNNNNNNNGG 8 cut(s) 335, 422, 445, 584, 961, 1082, 1083, 1114
Bse118I RCCGGY 2 cut(s) 368, 422
Bse1I ACTGG 1 cut(s) 760
Bse3DI GCAATG 1 cut(s) 1101
BseBI CCWGG 1 cut(s) 956
BseDI CCNNGG 9 cut(s) 444, 445, 600, 694, 873, 960, 1029, 1050, 1067
BseGI GGATG 5 cut(s) 78, 653, 743, 807, 1189
BseLI CCNNNNNNNGG 8 cut(s) 335, 422, 445, 584, 961, 1082, 1083, 1114
BseMI GCAATG 1 cut(s) 1101
BseNI ACTGG 1 cut(s) 760
BseSI GKGCMC 1 cut(s) 452
BseX3I CGGCCG 1 cut(s) 771
BseXI GCAGC 5 cut(s) 647, 662, 1174, 1177, 1180
Bsh1236I CGCG 4 cut(s) 241, 411, 728, 1167
Bsh1285I CGRYCG 1 cut(s) 774
BsiEI CGRYCG 1 cut(s) 774
BsiHKCI CYCGRG 4 cut(s) 293, 445, 836, 1067
BslFI GGGAC 4 cut(s) 188, 524, 698, 748
BslI CCNNNNNNNGG 8 cut(s) 335, 422, 445, 584, 961, 1082, 1083, 1114
BsmAI GTCTC 5 cut(s) 223, 436, 514, 563, 1077
BsmBI CGTCTC 2 cut(s) 223, 436
BsmFI GGGAC 4 cut(s) 188, 524, 698, 748
Bso31I GGTCTC 2 cut(s) 563, 1077
BsoBI CYCGRG 4 cut(s) 293, 445, 836, 1067
Bsp120I GGGCCC 1 cut(s) 448
Bsp1286I GDGCHC 2 cut(s) 452, 1090
Bsp143I GATC 5 cut(s) 435, 936, 948, 1173, 1178
Bsp19I CCATGG 1 cut(s) 960
Bsp68I TCGCGA 1 cut(s) 1167
BspFNI CGCG 4 cut(s) 241, 411, 728, 1167
BspLI GGNNCC 6 cut(s) 394, 450, 451, 694, 889, 1089
BspPI GGATC 3 cut(s) 430, 956, 1186
BspTNI GGTCTC 2 cut(s) 563, 1077
BsrBI CCGCTC 2 cut(s) 180, 826
BsrDI GCAATG 1 cut(s) 1101
BsrFI RCCGGY 2 cut(s) 368, 422
BsrI ACTGG 1 cut(s) 760
BssAI RCCGGY 2 cut(s) 368, 422
BssECI CCNNGG 9 cut(s) 444, 445, 600, 694, 873, 960, 1029, 1050, 1067
BssMI GATC 5 cut(s) 435, 936, 948, 1173, 1178
BssNI GRCGYC 3 cut(s) 270, 426, 660
BssT1I CCWWGG 3 cut(s) 600, 960, 1029
Bst2UI CCWGG 1 cut(s) 956
Bst4CI ACNGT 3 cut(s) 475, 751, 976
Bst6I CTCTTC 3 cut(s) 713, 1153, 1164
BstACI GRCGYC 3 cut(s) 270, 426, 660
BstBAI YACGTR 1 cut(s) 263
BstC8I GCNNGC 3 cut(s) 341, 578, 648
BstDEI CTNAG 1 cut(s) 1078
BstDSI CCRYGG 2 cut(s) 873, 960
BstEII GGTNACC 1 cut(s) 964
BstF5I GGATG 5 cut(s) 78, 653, 743, 807, 1189
BstFNI CGCG 4 cut(s) 241, 411, 728, 1167
BstHHI GCGC 1 cut(s) 243
BstKTI GATC 5 cut(s) 438, 939, 951, 1176, 1181
BstMAI GTCTC 5 cut(s) 223, 436, 514, 563, 1077
BstMBI GATC 5 cut(s) 435, 936, 948, 1173, 1178
BstMCI CGRYCG 1 cut(s) 774
BstMWI GCNNNNNNNGC 4 cut(s) 390, 832, 1193, 1199
BstNI CCWGG 1 cut(s) 956
BstPI GGTNACC 1 cut(s) 964
BstSFI CTRYAG 1 cut(s) 36
BstSLI GKGCMC 1 cut(s) 452
BstUI CGCG 4 cut(s) 241, 411, 728, 1167
BstV1I GCAGC 5 cut(s) 647, 662, 1174, 1177, 1180
BstZI CGGCCG 1 cut(s) 771
BtgI CCRYGG 2 cut(s) 873, 960
BtrI CACGTC 3 cut(s) 286, 805, 894
BtsCI GGATG 5 cut(s) 78, 653, 743, 807, 1189
BtuMI TCGCGA 1 cut(s) 1167
Cac8I GCNNGC 3 cut(s) 341, 578, 648
CfoI GCGC 1 cut(s) 243
Cfr10I RCCGGY 2 cut(s) 368, 422
Cfr13I GGNCC 5 cut(s) 448, 449, 604, 692, 856
Cfr9I CCCGGG 2 cut(s) 445, 1067
CseI GACGC 2 cut(s) 415, 649
Csp6I GTAC 4 cut(s) 30, 298, 502, 898
CviAII CATG 3 cut(s) 559, 643, 961
CviQI GTAC 4 cut(s) 30, 298, 502, 898
DdeI CTNAG 1 cut(s) 1078
DpnI GATC 5 cut(s) 437, 938, 950, 1175, 1180
DpnII GATC 5 cut(s) 435, 936, 948, 1173, 1178
EaeI YGGCCR 5 cut(s) 3, 370, 616, 771, 870
EagI CGGCCG 1 cut(s) 771
Eam1104I CTCTTC 3 cut(s) 713, 1153, 1164
EarI CTCTTC 3 cut(s) 713, 1153, 1164
EciI GGCGGA 3 cut(s) 311, 743, 900
EclXI CGGCCG 1 cut(s) 771
Eco130I CCWWGG 3 cut(s) 600, 960, 1029
Eco24I GRGCYC 2 cut(s) 452, 1090
Eco31I GGTCTC 2 cut(s) 563, 1077
Eco47I GGWCC 1 cut(s) 856
Eco52I CGGCCG 1 cut(s) 771
Eco72I CACGTG 1 cut(s) 263
Eco88I CYCGRG 4 cut(s) 293, 445, 836, 1067
Eco91I GGTNACC 1 cut(s) 964
EcoO109I RGGNCCY 2 cut(s) 449, 604
EcoO65I GGTNACC 1 cut(s) 964
EcoRII CCWGG 1 cut(s) 954
EcoT14I CCWWGG 3 cut(s) 600, 960, 1029
EcoT38I GRGCYC 2 cut(s) 452, 1090
ErhI CCWWGG 3 cut(s) 600, 960, 1029
Esp3I CGTCTC 2 cut(s) 223, 436
FaeI CATG 3 cut(s) 562, 646, 964
FaiI YATR 5 cut(s) 560, 644, 962, 1244, 1264
FaqI GGGAC 4 cut(s) 188, 524, 698, 748
FatI CATG 3 cut(s) 558, 642, 960
FauI CCCGC 6 cut(s) 185, 416, 581, 585, 831, 1075
FbaI TGATCA 1 cut(s) 936
Fnu4HI GCNGC 8 cut(s) 244, 636, 651, 691, 1154, 1188, 1191, 1194
FokI GGATG 5 cut(s) 65, 640, 730, 794, 1196
FriOI GRGCYC 2 cut(s) 452, 1090
Fsp4HI GCNGC 8 cut(s) 244, 636, 651, 691, 1154, 1188, 1191, 1194
GlaI GCGC 1 cut(s) 242
GluI GCNGC 8 cut(s) 244, 636, 651, 691, 1154, 1188, 1191, 1194
GsuI CTGGAG 1 cut(s) 743
HgaI GACGC 2 cut(s) 415, 649
HhaI GCGC 1 cut(s) 243
Hin1I GRCGYC 3 cut(s) 270, 426, 660
Hin1II CATG 3 cut(s) 562, 646, 964
Hin6I GCGC 1 cut(s) 241
HinP1I GCGC 1 cut(s) 241
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HinfI GANTC 3 cut(s) 549, 699, 839
HphI GGTGA 7 cut(s) 181, 340, 397, 589, 694, 946, 958
Hpy166II GTNNAC 3 cut(s) 400, 850, 900
Hpy188I TCNGA 5 cut(s) 166, 313, 568, 1178, 1183
Hpy188III TCNNGA 4 cut(s) 119, 433, 1042, 1166
Hpy8I GTNNAC 3 cut(s) 400, 850, 900
HpyAV CCTTC 5 cut(s) 71, 142, 264, 318, 463
HpyCH4III ACNGT 3 cut(s) 475, 751, 976
HpyCH4IV ACGT 6 cut(s) 262, 270, 285, 630, 804, 893
HpyCH4V TGCA 3 cut(s) 1061, 1202, 1232
HpyF10VI GCNNNNNNNGC 4 cut(s) 390, 832, 1193, 1199
HpyF3I CTNAG 1 cut(s) 1078
HpySE526I ACGT 6 cut(s) 262, 270, 285, 630, 804, 893
Hsp92I GRCGYC 3 cut(s) 270, 426, 660
Hsp92II CATG 3 cut(s) 562, 646, 964
HspAI GCGC 1 cut(s) 241
Ksp22I TGATCA 1 cut(s) 936
Kzo9I GATC 5 cut(s) 435, 936, 948, 1173, 1178
LmnI GCTCC 5 cut(s) 185, 398, 887, 1093, 1218
Lsp1109I GCAGC 5 cut(s) 647, 662, 1174, 1177, 1180
LweI GCATC 3 cut(s) 662, 1174, 1241
MaeII ACGT 6 cut(s) 262, 270, 285, 630, 804, 893
MaeIII GTNAC 3 cut(s) 346, 487, 964
MalI GATC 5 cut(s) 437, 938, 950, 1175, 1180
MbiI CCGCTC 2 cut(s) 180, 826
MboI GATC 5 cut(s) 435, 936, 948, 1173, 1178
MboII GAAGA 3 cut(s) 700, 1140, 1181
MhlI GDGCHC 2 cut(s) 452, 1090
MlsI TGGCCA 2 cut(s) 5, 872
MluCI AATT 5 cut(s) 208, 526, 622, 797, 999
MluNI TGGCCA 2 cut(s) 5, 872
MlyI GAGTC 1 cut(s) 848
MmeI TCCRAC 1 cut(s) 336
Mox20I TGGCCA 2 cut(s) 5, 872
MscI TGGCCA 2 cut(s) 5, 872
MseI TTAA 2 cut(s) 525, 1256
Msp20I TGGCCA 2 cut(s) 5, 872
MvaI CCWGG 1 cut(s) 956
MvnI CGCG 4 cut(s) 241, 411, 728, 1167
MwoI GCNNNNNNNGC 4 cut(s) 390, 832, 1193, 1199
NciI CCSGG 9 cut(s) 446, 447, 696, 770, 854, 946, 1052, 1068, 1069
NcoI CCATGG 1 cut(s) 960
NdeII GATC 5 cut(s) 435, 936, 948, 1173, 1178
NlaIII CATG 3 cut(s) 562, 646, 964
NlaIV GGNNCC 6 cut(s) 394, 450, 451, 694, 889, 1089
NmeAIII GCCGAG 1 cut(s) 564
NmuCI GTSAC 3 cut(s) 346, 487, 964
NruI TCGCGA 1 cut(s) 1167
PaeR7I CTCGAG 2 cut(s) 293, 836
PcsI WCGNNNNNNNCGW 5 cut(s) 291, 672, 681, 834, 839
PfeI GAWTC 2 cut(s) 549, 699
PflMI CCANNNNNTGG 1 cut(s) 961
PkrI GCNGC 8 cut(s) 245, 637, 652, 692, 1155, 1189, 1192, 1195
PleI GAGTC 1 cut(s) 847
PmaCI CACGTG 1 cut(s) 263
PmlI CACGTG 1 cut(s) 263
PpsI GAGTC 1 cut(s) 847
Ppu21I YACGTR 1 cut(s) 263
Psp6I CCWGG 1 cut(s) 954
PspCI CACGTG 1 cut(s) 263
PspEI GGTNACC 1 cut(s) 964
PspGI CCWGG 1 cut(s) 954
PspN4I GGNNCC 6 cut(s) 394, 450, 451, 694, 889, 1089
PspOMI GGGCCC 1 cut(s) 448
PspPI GGNCC 5 cut(s) 448, 449, 604, 692, 856
PspXI VCTCGAGB 2 cut(s) 293, 836
RruI TCGCGA 1 cut(s) 1167
RsaI GTAC 4 cut(s) 31, 299, 503, 899
RsaNI GTAC 4 cut(s) 30, 298, 502, 898
SaqAI TTAA 2 cut(s) 525, 1256
SatI GCNGC 8 cut(s) 244, 636, 651, 691, 1154, 1188, 1191, 1194
Sau3AI GATC 5 cut(s) 435, 936, 948, 1173, 1178
Sau96I GGNCC 5 cut(s) 448, 449, 604, 692, 856
SchI GAGTC 1 cut(s) 848
SduI GDGCHC 2 cut(s) 452, 1090
SfaNI GCATC 3 cut(s) 662, 1174, 1241
SfcI CTRYAG 1 cut(s) 36
Sfr274I CTCGAG 2 cut(s) 293, 836
SinI GGWCC 1 cut(s) 856
SlaI CTCGAG 2 cut(s) 293, 836
SmaI CCCGGG 2 cut(s) 447, 1069
SmlI CTYRAG 2 cut(s) 293, 836
SmoI CTYRAG 2 cut(s) 293, 836
Sse9I AATT 5 cut(s) 208, 526, 622, 797, 999
StyI CCWWGG 3 cut(s) 600, 960, 1029
TaaI ACNGT 3 cut(s) 475, 751, 976
TaiI ACGT 6 cut(s) 265, 273, 288, 633, 807, 896
TasI AATT 5 cut(s) 208, 526, 622, 797, 999
TauI GCSGC 3 cut(s) 246, 693, 1156
TfiI GAWTC 2 cut(s) 549, 699
Tru1I TTAA 2 cut(s) 525, 1256
Tru9I TTAA 2 cut(s) 525, 1256
TseFI GTSAC 3 cut(s) 346, 487, 964
TseI GCWGC 5 cut(s) 635, 650, 1187, 1190, 1193
Tsp45I GTSAC 3 cut(s) 346, 487, 964
TspGWI ACGGA 5 cut(s) 385, 511, 561, 890, 1125
TspMI CCCGGG 2 cut(s) 445, 1067
Van91I CCANNNNNTGG 1 cut(s) 961
VpaK11BI GGWCC 1 cut(s) 856
XapI RAATTY 1 cut(s) 797
XhoI CTCGAG 2 cut(s) 293, 836
XmaI CCCGGG 2 cut(s) 445, 1067
ZraI GACGTC 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.