Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0015283

Physical Location & Seq

Genomic Coordinates Forward (+)

20559576 .. 20560837

Gene Structure 1262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00016600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGCCTTTACATCCCCAAATCCCCATTTTACCCCTACCCACTTCCTCTATTTCCTCCTCCTCCTCACTTCCTCTCTCCCCTTTACTCTTTCCATCAACATCACCACTCTCCTCGCCCCCTTCCCCGACCTCTCCGACTTCACCTCCCTCCTCTCCGCCGCCATCTTCTCAGATCTCTCCCTCCGCTCCTCCCTCACCCTCCTCGCCGTCCCTAACCCTTTCCTCTCCTCCACCTCCGACCTCACGCGCCACCTCTCCCCCTCCTCACGCGCCGACGTCCTCCGCTACCACACCACCGGACGCGCCACCAACGACTTCGGCTCCGTCAATCTCACGCGCGACCCGACCACCGGGATCGTCTCCGTCCGCTCCCCCGCCACCTTCTCCCCCTCAAACGCCACCGTTTTGGGGCTCGTCAAGACTCTTCCCTACAATGTCAGTATCTTTTCCGTTAATTCCATCCTTGTCCCTTACGGCTTCGACCTCATGGCCTCCGAGACCCGGCCCCCTCTGGGCCTCAACATCACCAAGGCCCTGATCGACGGCCACAACTTCAACGTCGCCGCCTCCATGCTCGCCGCATCCGGCGTCGTCGAGGAATTCGAGGCCGACGAGGGCGGCGCCGGAATCACACTCTTCGTCCCTACGGACACGGCCTTTTCCGACCTCCCCGCAAACGTGAGGCTCCAATCGCTCCCGGCGGATAAGAAATCAGTGGTGTTGAAGTTCCATGTGCTCCATTCCTACTACCCATTGGGCTCGCTCGAGTCGATTGTGAACCCGGTCCAACCCACATTGGCTACAGAGCTAGTGGGGGCCGGTAGCTACACTCTCAACATCAGCAGAAACAACGGCTCCGTTTCAATCAACACCGGAATCATCCAGGCCTCGGTGACCCAGACGGTGTTCGATCAAAAGCCGGTGGCCATTTTCGGAGTTTCCAGGGTTTTGTTGCCCAAAGAGATTTTTGGGAGCACCCCGGCAGTCACATCCAGGCCCGGGACGCCAGTTTCCGGCGGGGCTGAGACGCCGGACAGTGCTCCGTCACCGGACAATTCGATGAGTGGGCAGGAACTCTCTTCGCCGCCCGGTTTTAAGGAGATAAAATCCGAGGGTGCTGCCATTACTGGGCTGTGGAGGTTGGGGTTTGCTTCATGTTGTATAGCATTGTATGTAATGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001871 GO:0003006 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006970 GO:0007155 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009651 GO:0009791 GO:0009825 GO:0009897 GO:0009986 GO:0009987 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0016020 GO:0016049 GO:0022414 GO:0022610 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0040007 GO:0044237 GO:0044249 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0048316 GO:0048354 GO:0048359 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071944 GO:0098552

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

394

Amino Acids

41.64

Weight (kDa)

5.62

Isoelectric Point (pI)

45.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fasciclin	PF02469	184 - 319	4.8e-18	Fasciclin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46550
fragaria_vesca	FvH4_3g36000
malus_domestica	MD11G1109900.v1.1
prunus_persica	Prupe.6G078300_v2.0.a1
pyrus_communis	pycom03g07740 pycom11g09060
rosa_chinensis	RchiOBHm_Chr5g0064411
rosa_laevigata	RLG00000035721
rosa_multiflora	Rmu_sc0001367.1_g000002 Rmu_sc0028469.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016600
rosa_rugosa	Rorug05G0364400
rosa_samantha	Rh5AG422900 Rh5BG438600 Rh5CG461300 Rh5DG451800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	279
AccB1I	GGYRCC	1 cut(s)	620
AccBSI	CCGCTC	2 cut(s)	186, 369
AccII	CGCG	5 cut(s)	247, 270, 303, 337, 339
AclWI	GGATC	1 cut(s)	362
AcoI	YGGCCR	2 cut(s)	544, 924
AcsI	RAATTY	1 cut(s)	599
AcyI	GRCGYC	5 cut(s)	276, 588, 621, 1004, 1028
AfiI	CCNNNNNNNGG	8 cut(s)	350, 408, 501, 512, 889, 999, 1013, 1128
AgsI	TTSAA	3 cut(s)	556, 724, 864
AjnI	CCWGG	3 cut(s)	882, 941, 992
AluBI	AGCT	2 cut(s)	808, 825
AluI	AGCT	2 cut(s)	808, 825
Alw21I	GWGCWC	3 cut(s)	738, 977, 1042
Alw26I	GTCTC	3 cut(s)	364, 491, 1019
AlwI	GGATC	1 cut(s)	362
Ama87I	CYCGRG	2 cut(s)	764, 998
ApeKI	GCWGC	1 cut(s)	1118
ApoI	RAATTY	1 cut(s)	599
AspLEI	GCGC	5 cut(s)	249, 272, 305, 339, 623
AspS9I	GGNCC	6 cut(s)	504, 514, 532, 784, 816, 996
AsuC2I	CCSGG	8 cut(s)	352, 502, 698, 782, 980, 999, 1000, 1089
AsuHPI	GGTGA	6 cut(s)	94, 133, 187, 517, 904, 1038
AvaI	CYCGRG	2 cut(s)	764, 998
AvaII	GGWCC	1 cut(s)	784
BalI	TGGCCA	1 cut(s)	926
BanI	GGYRCC	1 cut(s)	620
BanII	GRGCYC	2 cut(s)	414, 761
Bbv12I	GWGCWC	3 cut(s)	738, 977, 1042
BbvI	GCAGC	1 cut(s)	1105
BccI	CCATC	3 cut(s)	101, 170, 467
BceAI	ACGGC	5 cut(s)	191, 490, 559, 669, 868
BcgI	CGANNNNNNTGC	2 cut(s)	1100, 1134
BciT130I	CCWGG	3 cut(s)	884, 943, 994
BcnI	CCSGG	8 cut(s)	352, 502, 698, 782, 980, 999, 1000, 1089
BcoDI	GTCTC	3 cut(s)	364, 491, 1019
BfaI	CTAG	1 cut(s)	809
BfmI	CTRYAG	1 cut(s)	801
BfoI	RGCGCY	1 cut(s)	624
BglII	AGATCT	1 cut(s)	172
BisI	GCNGC	6 cut(s)	159, 564, 579, 619, 1085, 1119
BlsI	GCNGC	6 cut(s)	160, 565, 580, 620, 1086, 1120
Bme18I	GGWCC	1 cut(s)	784
BmeT110I	CYCGRG	2 cut(s)	764, 998
BmgT120I	GGNCC	6 cut(s)	504, 514, 532, 784, 816, 996
BmiI	GGNNCC	6 cut(s)	322, 506, 622, 686, 817, 856
BmrI	ACTGGG	1 cut(s)	1137
BmsI	GCATC	1 cut(s)	590
BmuI	ACTGGG	1 cut(s)	1137
BpuMI	CCSGG	8 cut(s)	352, 502, 698, 782, 980, 999, 1000, 1089
BsaHI	GRCGYC	5 cut(s)	276, 588, 621, 1004, 1028
BsaI	GGTCTC	1 cut(s)	491
BsaJI	CCNNGG	6 cut(s)	528, 888, 942, 978, 998, 1110
BsaWI	WCCGGW	3 cut(s)	296, 872, 1048
BsaXI	ACNNNNNCTCC	6 cut(s)	128, 158, 305, 335, 839, 869
Bsc4I	CCNNNNNNNGG	8 cut(s)	350, 408, 501, 512, 889, 999, 1013, 1128
Bse118I	RCCGGY	2 cut(s)	818, 919
Bse1I	ACTGG	2 cut(s)	1007, 1132
BseBI	CCWGG	3 cut(s)	884, 943, 994
BseDI	CCNNGG	6 cut(s)	528, 888, 942, 978, 998, 1110
BseGI	GGATG	5 cut(s)	11, 459, 581, 879, 989
BseLI	CCNNNNNNNGG	8 cut(s)	350, 408, 501, 512, 889, 999, 1013, 1128
BseMII	CTCAG	2 cut(s)	183, 1014
BseNI	ACTGG	2 cut(s)	1007, 1132
BseRI	GAGGAG	9 cut(s)	47, 50, 53, 101, 140, 178, 191, 217, 253
BseXI	GCAGC	1 cut(s)	1105
Bsh1236I	CGCG	5 cut(s)	247, 270, 303, 337, 339
BshNI	GGYRCC	1 cut(s)	620
BsiHKAI	GWGCWC	3 cut(s)	738, 977, 1042
BsiHKCI	CYCGRG	2 cut(s)	764, 998
BslFI	GGGAC	4 cut(s)	194, 452, 626, 1015
BslI	CCNNNNNNNGG	8 cut(s)	350, 408, 501, 512, 889, 999, 1013, 1128
BsmAI	GTCTC	3 cut(s)	364, 491, 1019
BsmBI	CGTCTC	2 cut(s)	364, 1019
BsmFI	GGGAC	4 cut(s)	194, 452, 626, 1015
Bso31I	GGTCTC	1 cut(s)	491
BsoBI	CYCGRG	2 cut(s)	764, 998
Bsp1286I	GDGCHC	5 cut(s)	414, 738, 761, 977, 1042
Bsp143I	GATC	4 cut(s)	172, 354, 537, 910
BspCNI	CTCAG	2 cut(s)	182, 1015
BspFNI	CGCG	5 cut(s)	247, 270, 303, 337, 339
BspLI	GGNNCC	6 cut(s)	322, 506, 622, 686, 817, 856
BspPI	GGATC	1 cut(s)	362
BspT107I	GGYRCC	1 cut(s)	620
BspTNI	GGTCTC	1 cut(s)	491
BsrBI	CCGCTC	2 cut(s)	186, 369
BsrFI	RCCGGY	2 cut(s)	818, 919
BsrI	ACTGG	2 cut(s)	1007, 1132
BssAI	RCCGGY	2 cut(s)	818, 919
BssECI	CCNNGG	6 cut(s)	528, 888, 942, 978, 998, 1110
BssMI	GATC	4 cut(s)	172, 354, 537, 910
BssNI	GRCGYC	5 cut(s)	276, 588, 621, 1004, 1028
BssT1I	CCWWGG	1 cut(s)	528
Bst2UI	CCWGG	3 cut(s)	884, 943, 994
Bst4CI	ACNGT	3 cut(s)	403, 904, 1037
Bst6I	CTCTTC	3 cut(s)	429, 641, 1084
BstACI	GRCGYC	5 cut(s)	276, 588, 621, 1004, 1028
BstC8I	GCNNGC	2 cut(s)	576, 761
BstDEI	CTNAG	2 cut(s)	169, 1023
BstEII	GGTNACC	1 cut(s)	892
BstF5I	GGATG	5 cut(s)	11, 459, 581, 879, 989
BstFNI	CGCG	5 cut(s)	247, 270, 303, 337, 339
BstH2I	RGCGCY	1 cut(s)	624
BstHHI	GCGC	5 cut(s)	249, 272, 305, 339, 623
BstKTI	GATC	4 cut(s)	175, 357, 540, 913
BstMAI	GTCTC	3 cut(s)	364, 491, 1019
BstMBI	GATC	4 cut(s)	172, 354, 537, 910
BstMWI	GCNNNNNNNGC	2 cut(s)	691, 1003
BstNI	CCWGG	3 cut(s)	884, 943, 994
BstPI	GGTNACC	1 cut(s)	892
BstSFI	CTRYAG	1 cut(s)	801
BstUI	CGCG	5 cut(s)	247, 270, 303, 337, 339
BstV1I	GCAGC	1 cut(s)	1105
BstX2I	RGATCY	1 cut(s)	172
BstXI	CCANNNNNNTGG	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	172
BtsCI	GGATG	5 cut(s)	11, 459, 581, 879, 989
BtsIMutI	CAGTG	2 cut(s)	720, 1042
Cac8I	GCNNGC	2 cut(s)	576, 761
CfoI	GCGC	5 cut(s)	249, 272, 305, 339, 623
Cfr10I	RCCGGY	2 cut(s)	818, 919
Cfr13I	GGNCC	6 cut(s)	504, 514, 532, 784, 816, 996
Cfr9I	CCCGGG	1 cut(s)	998
CseI	GACGC	4 cut(s)	309, 577, 1012, 1036
CviAII	CATG	4 cut(s)	487, 571, 731, 1155
DdeI	CTNAG	2 cut(s)	169, 1023
DinI	GGCGCC	1 cut(s)	622
DpnI	GATC	4 cut(s)	174, 356, 539, 912
DpnII	GATC	4 cut(s)	172, 354, 537, 910
EaeI	YGGCCR	2 cut(s)	544, 924
Eam1104I	CTCTTC	3 cut(s)	429, 641, 1084
EarI	CTCTTC	3 cut(s)	429, 641, 1084
EciI	GGCGGA	2 cut(s)	145, 716
Eco130I	CCWWGG	1 cut(s)	528
Eco147I	AGGCCT	1 cut(s)	887
Eco24I	GRGCYC	2 cut(s)	414, 761
Eco31I	GGTCTC	1 cut(s)	491
Eco47I	GGWCC	1 cut(s)	784
Eco88I	CYCGRG	2 cut(s)	764, 998
Eco91I	GGTNACC	1 cut(s)	892
EcoO109I	RGGNCCY	1 cut(s)	532
EcoO65I	GGTNACC	1 cut(s)	892
EcoRI	GAATTC	1 cut(s)	599
EcoRII	CCWGG	3 cut(s)	882, 941, 992
EcoT14I	CCWWGG	1 cut(s)	528
EcoT38I	GRGCYC	2 cut(s)	414, 761
EgeI	GGCGCC	1 cut(s)	622
EheI	GGCGCC	1 cut(s)	622
ErhI	CCWWGG	1 cut(s)	528
Esp3I	CGTCTC	2 cut(s)	364, 1019
FaeI	CATG	4 cut(s)	490, 574, 734, 1158
FaiI	YATR	7 cut(s)	488, 572, 732, 1156, 1163, 1173, 1183
FaqI	GGGAC	4 cut(s)	194, 452, 626, 1015
FatI	CATG	4 cut(s)	486, 570, 730, 1154
FauI	CCCGC	3 cut(s)	382, 679, 1010
Fnu4HI	GCNGC	6 cut(s)	159, 564, 579, 619, 1085, 1119
FokI	GGATG	4 cut(s)	446, 568, 866, 976
FriOI	GRGCYC	2 cut(s)	414, 761
Fsp4HI	GCNGC	6 cut(s)	159, 564, 579, 619, 1085, 1119
FspBI	CTAG	1 cut(s)	809
GlaI	GCGC	5 cut(s)	248, 271, 304, 338, 622
GluI	GCNGC	6 cut(s)	159, 564, 579, 619, 1085, 1119
HaeII	RGCGCY	1 cut(s)	624
HgaI	GACGC	4 cut(s)	309, 577, 1012, 1036
HhaI	GCGC	5 cut(s)	249, 272, 305, 339, 623
Hin1I	GRCGYC	5 cut(s)	276, 588, 621, 1004, 1028
Hin1II	CATG	4 cut(s)	490, 574, 734, 1158
Hin6I	GCGC	5 cut(s)	247, 270, 303, 337, 621
HinP1I	GCGC	5 cut(s)	247, 270, 303, 337, 621
HinfI	GANTC	4 cut(s)	421, 627, 767, 876
HphI	GGTGA	6 cut(s)	94, 133, 187, 517, 904, 1038
Hpy166II	GTNNAC	1 cut(s)	778
Hpy188I	TCNGA	7 cut(s)	136, 172, 238, 496, 664, 935, 1111
Hpy188III	TCNNGA	1 cut(s)	418
Hpy8I	GTNNAC	1 cut(s)	778
Hpy99I	CGWCG	6 cut(s)	278, 545, 563, 593, 596, 614
HpyAV	CCTTC	2 cut(s)	130, 391
HpyCH4III	ACNGT	3 cut(s)	403, 904, 1037
HpyCH4IV	ACGT	3 cut(s)	276, 558, 678
HpyF10VI	GCNNNNNNNGC	2 cut(s)	691, 1003
HpyF3I	CTNAG	2 cut(s)	169, 1023
HpySE526I	ACGT	3 cut(s)	276, 558, 678
Hsp92I	GRCGYC	5 cut(s)	276, 588, 621, 1004, 1028
Hsp92II	CATG	4 cut(s)	490, 574, 734, 1158
HspAI	GCGC	5 cut(s)	247, 270, 303, 337, 621
KasI	GGCGCC	1 cut(s)	620
Kzo9I	GATC	4 cut(s)	172, 354, 537, 910
LmnI	GCTCC	9 cut(s)	191, 326, 374, 690, 699, 741, 860, 972, 1045
Lsp1109I	GCAGC	1 cut(s)	1105
LweI	GCATC	1 cut(s)	590
MaeI	CTAG	1 cut(s)	809
MaeII	ACGT	3 cut(s)	276, 558, 678
MaeIII	GTNAC	3 cut(s)	892, 985, 1044
MalI	GATC	4 cut(s)	174, 356, 539, 912
MbiI	CCGCTC	2 cut(s)	186, 369
MboI	GATC	4 cut(s)	172, 354, 537, 910
MboII	GAAGA	4 cut(s)	157, 416, 628, 1071
MflI	RGATCY	1 cut(s)	172
MhlI	GDGCHC	5 cut(s)	414, 738, 761, 977, 1042
MlsI	TGGCCA	1 cut(s)	926
MluCI	AATT	3 cut(s)	454, 599, 1054
MluNI	TGGCCA	1 cut(s)	926
Mly113I	GGCGCC	1 cut(s)	621
MlyI	GAGTC	2 cut(s)	415, 776
MmeI	TCCRAC	4 cut(s)	159, 261, 687, 811
Mox20I	TGGCCA	1 cut(s)	926
MscI	TGGCCA	1 cut(s)	926
MseI	TTAA	2 cut(s)	453, 1095
Msp20I	TGGCCA	1 cut(s)	926
MvaI	CCWGG	3 cut(s)	884, 943, 994
MvnI	CGCG	5 cut(s)	247, 270, 303, 337, 339
MwoI	GCNNNNNNNGC	2 cut(s)	691, 1003
NarI	GGCGCC	1 cut(s)	621
NciI	CCSGG	8 cut(s)	352, 502, 698, 782, 980, 999, 1000, 1089
NdeII	GATC	4 cut(s)	172, 354, 537, 910
NlaIII	CATG	4 cut(s)	490, 574, 734, 1158
NlaIV	GGNNCC	6 cut(s)	322, 506, 622, 686, 817, 856
NmuCI	GTSAC	3 cut(s)	892, 985, 1044
PaeR7I	CTCGAG	1 cut(s)	764
PceI	AGGCCT	1 cut(s)	887
PcsI	WCGNNNNNNNCGW	4 cut(s)	341, 600, 609, 767
PfeI	GAWTC	2 cut(s)	627, 876
PkrI	GCNGC	6 cut(s)	160, 565, 580, 620, 1086, 1120
PleI	GAGTC	2 cut(s)	415, 775
PluTI	GGCGCC	1 cut(s)	624
PpsI	GAGTC	2 cut(s)	415, 775
Psp6I	CCWGG	3 cut(s)	882, 941, 992
PspEI	GGTNACC	1 cut(s)	892
PspGI	CCWGG	3 cut(s)	882, 941, 992
PspN4I	GGNNCC	6 cut(s)	322, 506, 622, 686, 817, 856
PspPI	GGNCC	6 cut(s)	504, 514, 532, 784, 816, 996
PspXI	VCTCGAGB	1 cut(s)	764
PsuI	RGATCY	1 cut(s)	172
SaqAI	TTAA	2 cut(s)	453, 1095
SatI	GCNGC	6 cut(s)	159, 564, 579, 619, 1085, 1119
Sau3AI	GATC	4 cut(s)	172, 354, 537, 910
Sau96I	GGNCC	6 cut(s)	504, 514, 532, 784, 816, 996
SchI	GAGTC	2 cut(s)	415, 776
SduI	GDGCHC	5 cut(s)	414, 738, 761, 977, 1042
SfaNI	GCATC	1 cut(s)	590
SfcI	CTRYAG	1 cut(s)	801
SfoI	GGCGCC	1 cut(s)	622
Sfr274I	CTCGAG	1 cut(s)	764
SinI	GGWCC	1 cut(s)	784
SlaI	CTCGAG	1 cut(s)	764
SmaI	CCCGGG	1 cut(s)	1000
SmlI	CTYRAG	1 cut(s)	764
SmoI	CTYRAG	1 cut(s)	764
Sse9I	AATT	3 cut(s)	454, 599, 1054
SseBI	AGGCCT	1 cut(s)	887
SspDI	GGCGCC	1 cut(s)	620
SspMI	CTAG	1 cut(s)	809
StuI	AGGCCT	1 cut(s)	887
StyI	CCWWGG	1 cut(s)	528
TaaI	ACNGT	3 cut(s)	403, 904, 1037
TaiI	ACGT	3 cut(s)	279, 561, 681
TaqI	TCGA	8 cut(s)	480, 540, 594, 603, 765, 770, 909, 1058
TasI	AATT	3 cut(s)	454, 599, 1054
TauI	GCSGC	5 cut(s)	161, 566, 581, 621, 1087
TfiI	GAWTC	2 cut(s)	627, 876
Tru1I	TTAA	2 cut(s)	453, 1095
Tru9I	TTAA	2 cut(s)	453, 1095
TscAI	CASTG	2 cut(s)	720, 1042
TseFI	GTSAC	3 cut(s)	892, 985, 1044
TseI	GCWGC	1 cut(s)	1118
Tsp45I	GTSAC	3 cut(s)	892, 985, 1044
TspDTI	ATGAA	1 cut(s)	1143
TspGWI	ACGGA	6 cut(s)	313, 352, 439, 662, 847, 1032
TspMI	CCCGGG	1 cut(s)	998
TspRI	CASTG	2 cut(s)	720, 1042
VpaK11BI	GGWCC	1 cut(s)	784
XapI	RAATTY	1 cut(s)	599
XhoI	CTCGAG	1 cut(s)	764
XmaI	CCCGGG	1 cut(s)	998
XspI	CTAG	1 cut(s)	809
ZraI	GACGTC	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.