Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0015283

Physical Location & Seq

Genomic Coordinates Forward (+)

9698406 .. 9699197

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1109900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCCTCCGATGCCCGCCCGCCCCTCGGCATCAACATCACCAAAGTCCTCATCGACGGCCACAATTTCAACGTCGCAGCCTCCATGCTCGCGGCATCCGGCGTCGTCGAGGAGTTCGAGGCCGCCGAGGGCGGTGCCGGAATCACCCTCTTCGTCCCCACCGACACCGCGTTCTCCAATCTCCCGTCCACCGTCCGCCTCCAGTCCCTCCCGGCCAACAGAAAAGCGGTAGTTCTCAAATTCCACGTCCTCCCCTCCTACTACCCACTCGGTTCGCTCCAGTCGATTGTGAACCCGGTCCAGCCCACATTGGCCACGGACGACGGCGGAGCCACCTCGTACACTCTCAACATCAGCAGAATCAACGGCTCGATGGCCATCAGCACCGGGATCGTCCAGGCCGTGGTCACCCAGACGGTGTTCGACCAAAAGCCCGTGTCAATTTTCGGGGTTTCGGAGGTTTTGCTGCCCAAAGAGATCTTCGGTAGAAACCCGATTTTCGCAACGCAACCCGGGCCTCCCTTAGACGGGGCTCCGCCCCCCGACATTGCCCTCTCGCCGGAGAGCCTGAATGAACCTCCGTCGCACCTCTCTTCGCCGCCCGATTGGATCAGATCAGATGCCGCTACTTCTGCAATCAATGGGTTGCGGAGCTTGTGGATTGCATCTTGTTGTATAGGATTGTATTTAATGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001871 GO:0003006 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006970 GO:0007155 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009651 GO:0009791 GO:0009825 GO:0009897 GO:0009986 GO:0009987 GO:0010154 GO:0010191 GO:0010192 GO:0010214 GO:0016020 GO:0016049 GO:0022414 GO:0022610 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0040007 GO:0044237 GO:0044249 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0048316 GO:0048354 GO:0048359 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071944 GO:0098552

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

233

Amino Acids

24.33

Weight (kDa)

4.92

Isoelectric Point (pI)

51.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fasciclin	PF02469	22 - 157	3.7e-16	Fasciclin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46550
fragaria_vesca	FvH4_3g36000
malus_domestica	MD11G1109900.v1.1
prunus_persica	Prupe.6G078300_v2.0.a1
pyrus_communis	pycom03g07740 pycom11g09060
rosa_chinensis	RchiOBHm_Chr5g0064411
rosa_laevigata	RLG00000035721
rosa_multiflora	Rmu_sc0001367.1_g000002 Rmu_sc0028469.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016600
rosa_rugosa	Rorug05G0364400
rosa_samantha	Rh5AG422900 Rh5BG438600 Rh5CG461300 Rh5DG451800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	134
AccB7I	CCANNNNNTGG	1 cut(s)	403
AccII	CGCG	2 cut(s)	92, 170
AclWI	GGATC	2 cut(s)	398, 617
AcoI	YGGCCR	4 cut(s)	58, 213, 312, 375
AcsI	RAATTY	1 cut(s)	239
AcyI	GRCGYC	1 cut(s)	102
AfaI	GTAC	1 cut(s)	341
AfiI	CCNNNNNNNGG	5 cut(s)	26, 403, 527, 528, 559
AgsI	TTSAA	1 cut(s)	70
AjiI	CACGTC	1 cut(s)	247
AjnI	CCWGG	1 cut(s)	396
AjuI	GAANNNNNNNTTGG	2 cut(s)	464, 496
AluBI	AGCT	1 cut(s)	654
AluI	AGCT	1 cut(s)	654
AlwI	GGATC	2 cut(s)	398, 617
Ama87I	CYCGRG	1 cut(s)	512
AoxI	GGCC	8 cut(s)	3, 58, 120, 213, 312, 375, 399, 515
ApeKI	GCWGC	2 cut(s)	77, 466
ApoI	RAATTY	1 cut(s)	239
ArsI	GACNNNNNNTTYG	2 cut(s)	231, 263
AspS9I	GGNCC	2 cut(s)	298, 515
AsuC2I	CCSGG	5 cut(s)	212, 296, 388, 513, 514
AsuHPI	GGTGA	3 cut(s)	31, 136, 400
AvaI	CYCGRG	1 cut(s)	512
AvaII	GGWCC	1 cut(s)	298
BalI	TGGCCA	2 cut(s)	314, 377
BanI	GGYRCC	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	535
BbvI	GCAGC	2 cut(s)	89, 453
BccI	CCATC	2 cut(s)	367, 386
BceAI	ACGGC	4 cut(s)	73, 340, 382, 386
BcgI	CGANNNNNNTGC	4 cut(s)	116, 150, 373, 407
BciT130I	CCWGG	1 cut(s)	398
BcnI	CCSGG	5 cut(s)	212, 296, 388, 513, 514
BglII	AGATCT	1 cut(s)	477
BisI	GCNGC	6 cut(s)	78, 93, 123, 467, 599, 624
BlsI	GCNGC	6 cut(s)	79, 94, 124, 468, 600, 625
Bme1390I	CCNGG	6 cut(s)	212, 296, 388, 398, 513, 514
Bme18I	GGWCC	1 cut(s)	298
BmeT110I	CYCGRG	1 cut(s)	512
BmgBI	CACGTC	1 cut(s)	247
BmgT120I	GGNCC	2 cut(s)	298, 515
BmiI	GGNNCC	3 cut(s)	136, 331, 534
BmrFI	CCNGG	6 cut(s)	212, 296, 388, 398, 513, 514
BmsI	GCATC	4 cut(s)	39, 104, 610, 674
BpmI	CTGGAG	2 cut(s)	185, 263
BpuMI	CCSGG	5 cut(s)	212, 296, 388, 513, 514
BsaBI	GATNNNNATC	1 cut(s)	377
BsaHI	GRCGYC	1 cut(s)	102
BsaJI	CCNNGG	5 cut(s)	25, 126, 315, 402, 512
Bsc4I	CCNNNNNNNGG	5 cut(s)	26, 403, 527, 528, 559
Bse1I	ACTGG	2 cut(s)	202, 280
Bse3DI	GCAATG	1 cut(s)	546
Bse8I	GATNNNNATC	1 cut(s)	377
BseBI	CCWGG	1 cut(s)	398
BseDI	CCNNGG	5 cut(s)	25, 126, 315, 402, 512
BseGI	GGATG	1 cut(s)	95
BseJI	GATNNNNATC	1 cut(s)	377
BseLI	CCNNNNNNNGG	5 cut(s)	26, 403, 527, 528, 559
BseMI	GCAATG	1 cut(s)	546
BseNI	ACTGG	2 cut(s)	202, 280
BseRI	GAGGAG	1 cut(s)	125
BseXI	GCAGC	2 cut(s)	89, 453
Bsh1236I	CGCG	2 cut(s)	92, 170
BshFI	GGCC	8 cut(s)	5, 60, 122, 215, 314, 377, 401, 517
BshNI	GGYRCC	1 cut(s)	134
BsiHKCI	CYCGRG	1 cut(s)	512
BsiSI	CCGG	7 cut(s)	99, 138, 212, 296, 387, 513, 560
BslFI	GGGAC	2 cut(s)	140, 190
BslI	CCNNNNNNNGG	5 cut(s)	26, 403, 527, 528, 559
BsmFI	GGGAC	2 cut(s)	140, 190
BsnI	GGCC	8 cut(s)	5, 60, 122, 215, 314, 377, 401, 517
BsoBI	CYCGRG	1 cut(s)	512
Bsp1286I	GDGCHC	1 cut(s)	535
Bsp143I	GATC	4 cut(s)	390, 477, 609, 614
BspANI	GGCC	8 cut(s)	5, 60, 122, 215, 314, 377, 401, 517
BspFNI	CGCG	2 cut(s)	92, 170
BspLI	GGNNCC	3 cut(s)	136, 331, 534
BspPI	GGATC	2 cut(s)	398, 617
BspT107I	GGYRCC	1 cut(s)	134
BsrDI	GCAATG	1 cut(s)	546
BsrI	ACTGG	2 cut(s)	202, 280
BssECI	CCNNGG	5 cut(s)	25, 126, 315, 402, 512
BssMI	GATC	4 cut(s)	390, 477, 609, 614
BssNI	GRCGYC	1 cut(s)	102
Bst2UI	CCWGG	1 cut(s)	398
Bst4CI	ACNGT	2 cut(s)	193, 418
Bst6I	CTCTTC	2 cut(s)	155, 598
BstACI	GRCGYC	1 cut(s)	102
BstC8I	GCNNGC	3 cut(s)	16, 20, 90
BstDEI	CTNAG	1 cut(s)	523
BstDSI	CCRYGG	2 cut(s)	315, 402
BstEII	GGTNACC	1 cut(s)	406
BstF5I	GGATG	1 cut(s)	95
BstFNI	CGCG	2 cut(s)	92, 170
BstKTI	GATC	4 cut(s)	393, 480, 612, 617
BstMBI	GATC	4 cut(s)	390, 477, 609, 614
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 514, 632
BstNI	CCWGG	1 cut(s)	398
BstPI	GGTNACC	1 cut(s)	406
BstSCI	CCNGG	6 cut(s)	210, 294, 386, 396, 511, 512
BstUI	CGCG	2 cut(s)	92, 170
BstV1I	GCAGC	2 cut(s)	89, 453
BstX2I	RGATCY	1 cut(s)	477
BstYI	RGATCY	1 cut(s)	477
BsuRI	GGCC	8 cut(s)	5, 60, 122, 215, 314, 377, 401, 517
BtgI	CCRYGG	2 cut(s)	315, 402
BtrI	CACGTC	1 cut(s)	247
BtsCI	GGATG	1 cut(s)	95
Cac8I	GCNNGC	3 cut(s)	16, 20, 90
Cfr13I	GGNCC	2 cut(s)	298, 515
Cfr9I	CCCGGG	1 cut(s)	512
CseI	GACGC	1 cut(s)	91
Csp6I	GTAC	1 cut(s)	340
CviAII	CATG	1 cut(s)	85
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	1 cut(s)	523
DpnI	GATC	4 cut(s)	392, 479, 611, 616
DpnII	GATC	4 cut(s)	390, 477, 609, 614
EaeI	YGGCCR	4 cut(s)	58, 213, 312, 375
Eam1104I	CTCTTC	2 cut(s)	155, 598
EarI	CTCTTC	2 cut(s)	155, 598
EciI	GGCGGA	3 cut(s)	185, 342, 525
Eco24I	GRGCYC	1 cut(s)	535
Eco47I	GGWCC	1 cut(s)	298
Eco88I	CYCGRG	1 cut(s)	512
Eco91I	GGTNACC	1 cut(s)	406
EcoO65I	GGTNACC	1 cut(s)	406
EcoRII	CCWGG	1 cut(s)	396
EcoT38I	GRGCYC	1 cut(s)	535
FaeI	CATG	1 cut(s)	88
FaiI	YATR	3 cut(s)	86, 677, 697
FaqI	GGGAC	2 cut(s)	140, 190
FatI	CATG	1 cut(s)	84
FauI	CCCGC	2 cut(s)	23, 27
Fnu4HI	GCNGC	6 cut(s)	78, 93, 123, 467, 599, 624
FokI	GGATG	1 cut(s)	82
FriOI	GRGCYC	1 cut(s)	535
Fsp4HI	GCNGC	6 cut(s)	78, 93, 123, 467, 599, 624
GluI	GCNGC	6 cut(s)	78, 93, 123, 467, 599, 624
GsuI	CTGGAG	2 cut(s)	185, 263
HaeIII	GGCC	8 cut(s)	5, 60, 122, 215, 314, 377, 401, 517
HapII	CCGG	7 cut(s)	99, 138, 212, 296, 387, 513, 560
HgaI	GACGC	1 cut(s)	91
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	1 cut(s)	88
HinfI	GANTC	2 cut(s)	141, 360
HpaII	CCGG	7 cut(s)	99, 138, 212, 296, 387, 513, 560
HphI	GGTGA	3 cut(s)	31, 136, 400
Hpy166II	GTNNAC	3 cut(s)	189, 292, 342
Hpy188I	TCNGA	4 cut(s)	10, 457, 614, 619
Hpy8I	GTNNAC	3 cut(s)	189, 292, 342
Hpy99I	CGWCG	6 cut(s)	59, 77, 107, 110, 326, 586
HpyCH4III	ACNGT	2 cut(s)	193, 418
HpyCH4IV	ACGT	2 cut(s)	72, 246
HpyCH4V	TGCA	2 cut(s)	635, 665
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 514, 632
HpyF3I	CTNAG	1 cut(s)	523
HpySE526I	ACGT	2 cut(s)	72, 246
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	1 cut(s)	88
Kzo9I	GATC	4 cut(s)	390, 477, 609, 614
LmnI	GCTCC	4 cut(s)	282, 329, 538, 651
Lsp1109I	GCAGC	2 cut(s)	89, 453
LweI	GCATC	4 cut(s)	39, 104, 610, 674
MaeII	ACGT	2 cut(s)	72, 246
MaeIII	GTNAC	1 cut(s)	406
MalI	GATC	4 cut(s)	392, 479, 611, 616
MboI	GATC	4 cut(s)	390, 477, 609, 614
MboII	GAAGA	3 cut(s)	142, 472, 585
MflI	RGATCY	1 cut(s)	477
MhlI	GDGCHC	1 cut(s)	535
MlsI	TGGCCA	2 cut(s)	314, 377
MluCI	AATT	3 cut(s)	64, 239, 441
MluNI	TGGCCA	2 cut(s)	314, 377
Mox20I	TGGCCA	2 cut(s)	314, 377
MscI	TGGCCA	2 cut(s)	314, 377
MseI	TTAA	1 cut(s)	689
Msp20I	TGGCCA	2 cut(s)	314, 377
MspI	CCGG	7 cut(s)	99, 138, 212, 296, 387, 513, 560
MspR9I	CCNGG	6 cut(s)	212, 296, 388, 398, 513, 514
MvaI	CCWGG	1 cut(s)	398
MvnI	CGCG	2 cut(s)	92, 170
MwoI	GCNNNNNNNGC	3 cut(s)	11, 514, 632
NciI	CCSGG	5 cut(s)	212, 296, 388, 513, 514
NdeII	GATC	4 cut(s)	390, 477, 609, 614
NlaIII	CATG	1 cut(s)	88
NlaIV	GGNNCC	3 cut(s)	136, 331, 534
NmeAIII	GCCGAG	2 cut(s)	6, 151
NmuCI	GTSAC	1 cut(s)	406
PcsI	WCGNNNNNNNCGW	5 cut(s)	114, 123, 159, 281, 399
PfeI	GAWTC	2 cut(s)	141, 360
PflMI	CCANNNNNTGG	1 cut(s)	403
PkrI	GCNGC	6 cut(s)	79, 94, 124, 468, 600, 625
Psp6I	CCWGG	1 cut(s)	396
PspEI	GGTNACC	1 cut(s)	406
PspGI	CCWGG	1 cut(s)	396
PspN4I	GGNNCC	3 cut(s)	136, 331, 534
PspPI	GGNCC	2 cut(s)	298, 515
PsuI	RGATCY	1 cut(s)	477
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
SaqAI	TTAA	1 cut(s)	689
SatI	GCNGC	6 cut(s)	78, 93, 123, 467, 599, 624
Sau3AI	GATC	4 cut(s)	390, 477, 609, 614
Sau96I	GGNCC	2 cut(s)	298, 515
ScrFI	CCNGG	6 cut(s)	212, 296, 388, 398, 513, 514
SduI	GDGCHC	1 cut(s)	535
SetI	ASST	7 cut(s)	75, 249, 338, 462, 580, 591, 656
SfaNI	GCATC	4 cut(s)	39, 104, 610, 674
SinI	GGWCC	1 cut(s)	298
SmaI	CCCGGG	1 cut(s)	514
Sse9I	AATT	3 cut(s)	64, 239, 441
StyD4I	CCNGG	6 cut(s)	210, 294, 386, 396, 511, 512
TaaI	ACNGT	2 cut(s)	193, 418
TaiI	ACGT	2 cut(s)	75, 249
TaqI	TCGA	6 cut(s)	54, 108, 117, 284, 371, 423
TasI	AATT	3 cut(s)	64, 239, 441
TauI	GCSGC	4 cut(s)	95, 125, 601, 626
TfiI	GAWTC	2 cut(s)	141, 360
Tru1I	TTAA	1 cut(s)	689
Tru9I	TTAA	1 cut(s)	689
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	2 cut(s)	77, 466
Tsp45I	GTSAC	1 cut(s)	406
TspDTI	ATGAA	1 cut(s)	588
TspGWI	ACGGA	2 cut(s)	332, 570
TspMI	CCCGGG	1 cut(s)	512
Van91I	CCANNNNNTGG	1 cut(s)	403
VpaK11BI	GGWCC	1 cut(s)	298
XapI	RAATTY	1 cut(s)	239
XmaI	CCCGGG	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.