AT3G47860
ERF Family

Belongs to the calycin superfamily. Lipocalin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009620
Physical Location & Seq
Reverse (-)
17656602 .. 17658353
1752 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G47860.1

Sequence Viewer

Length: 1062 bp
ATGATATTATTAAGTAGTAGTATAAGCCTCTCAAGACCAGTTTCTTCTCAAAGCTTCTCTCCACCTGCTGCCACTTCAACAAGGAGATCTCATTCCTCTGTCACAGTCAAGTGCTGCTGTTCTTCCAGAAGGTTGTTGAAGAATCCTGAGTTAAAATGTTCCTTGGAGAATCTCTTTGAAATCCAGGCTTTGAGGAAGTGTTTTGTTTCAGGGTTTGCAGCTATTTTGCTTCTCTCTCAGGCAGGCCAGGGTATAGCGTTGGATCTCTCATCTGGTTATCAGAACATTTGCCAACTAGGGAGTGCTGCTGCTGTGGGAGAAAACAAGCTGACTCTTCCATCTGATGGTGACTCGGAATCAATGATGATGATGATGATGAGAGGCATGACTGCTAAGAACTTTGACCCTGTTAGGTACTCTGGAAGATGGTTTGAAGTAGCTTCTCTTAAGCGTGGATTTGCAGGTCAAGGCCAAGAAGACTGTCATTGCACTCAGGGAGTATACACGTTTGATATGAAGGAATCAGCCATTAGAGTAGATACATTTTGTGTTCATGGCAGCCCTGATGGATATATAACAGGAATCAGAGGGAAAGTTCAATGCGTGGGAGCGGAAGACCTCGAGAAAAGCGAGACTGACTTAGAAAAGCAAGAGATGATTAAAGAGAAGTGTTTCCTACGATTTCCCACCATTCCTTTTATCCCCAAGTTGCCTTATGATGTCATAGCCACAGACTACGACAACTACGCACTTGTTTCTGGAGCCAAAGACAAGGGCTTTGTTCAGGTATACTCAAGGACGCCAAATCCAGGACCTGAGTTCATCGCAAAGTACAAGAACTACTTGGCACAATTTGGCTATGACCCGGAAAAAATAAAGGATACACCACAGGACTGTGAAGTGACTGATGCTGAGCTAGCAGCCATGATGTCCATGCCAGGTATGGAGCAAACACTGACCAACCAGTTTCCAGATCTTGGATTAAGAAAGTCAGTCCAGTTTGATCCCTTCACAAGTGTGTTTGAAACCTTGAAGAAACTTGTACCGCTCTATTTCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000302 GO:0001101 GO:0001817 GO:0001818 GO:0001952 GO:0001953 GO:0002682 GO:0002683 GO:0002685 GO:0002686 GO:0003006 GO:0003674 GO:0005488 GO:0005496 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0005975 GO:0005996 GO:0006006 GO:0006629 GO:0006950 GO:0006979 GO:0007162 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0007568 GO:0008150 GO:0008152 GO:0008285 GO:0008289 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009611 GO:0009628 GO:0009635 GO:0009636 GO:0009642 GO:0009644 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009888 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010117 GO:0010154 GO:0010431 GO:0010565 GO:0010605 GO:0010640 GO:0010642 GO:0010646 GO:0010648 GO:0010810 GO:0010812 GO:0012505 GO:0014012 GO:0015485 GO:0016020 GO:0016043 GO:0019216 GO:0019217 GO:0019222 GO:0019318 GO:0021700 GO:0022008 GO:0022414 GO:0022626 GO:0023051 GO:0023057 GO:0030030 GO:0030154 GO:0030155 GO:0030182 GO:0030334 GO:0030336 GO:0030425 GO:0031099 GO:0031102 GO:0031103 GO:0031175 GO:0031323 GO:0031324 GO:0031347 GO:0031348 GO:0031976 GO:0031977 GO:0031984 GO:0032101 GO:0032102 GO:0032386 GO:0032387 GO:0032501 GO:0032502 GO:0032504 GO:0032642 GO:0032682 GO:0032879 GO:0032880 GO:0032934 GO:0032991 GO:0033157 GO:0033554 GO:0033993 GO:0034357 GO:0034442 GO:0034443 GO:0036094 GO:0036477 GO:0040007 GO:0040012 GO:0040013 GO:0042060 GO:0042127 GO:0042221 GO:0042246 GO:0042306 GO:0042308 GO:0042493 GO:0042651 GO:0042995 GO:0043005 GO:0043025 GO:0043178 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044087 GO:0044238 GO:0044281 GO:0044297 GO:0044421 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044445 GO:0044446 GO:0044463 GO:0044464 GO:0045833 GO:0045922 GO:0046320 GO:0046322 GO:0046822 GO:0046823 GO:0048316 GO:0048468 GO:0048471 GO:0048513 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0048608 GO:0048609 GO:0048660 GO:0048662 GO:0048666 GO:0048678 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050727 GO:0050728 GO:0050746 GO:0050748 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051223 GO:0051224 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051270 GO:0051271 GO:0051716 GO:0051893 GO:0051895 GO:0055035 GO:0060255 GO:0060322 GO:0060341 GO:0060587 GO:0060588 GO:0061458 GO:0061564 GO:0062012 GO:0062014 GO:0065007 GO:0070201 GO:0071637 GO:0071638 GO:0071695 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090087 GO:0090109 GO:0090317 GO:0097159 GO:0097305 GO:0097447 GO:0097458 GO:0120025 GO:0120036 GO:0120038 GO:1900015 GO:1900016 GO:1900180 GO:1900181 GO:1901562 GO:1901700 GO:1901888 GO:1901889 GO:1903391 GO:1903392 GO:1903827 GO:1903828 GO:1904589 GO:1904590 GO:1904950 GO:1990904 GO:2000097 GO:2000098 GO:2000145 GO:2000146 GO:2000401 GO:2000402 GO:2000404 GO:2000405
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipocalin_2

Protein Analysis

353

Amino Acids

39.12

Weight (kDa)

6.36

Isoelectric Point (pI)

41.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipocalin_2 PF08212 137 - 297 1.3e-08 Lipocalin-like domain
Lipocalin PF00061 225 - 297 9.1e-06 Lipocalin / cytosolic fatty-acid binding protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 73
Acc36I ACCTGC 2 cut(s) 73, 452
AccB7I CCANNNNNTGG 2 cut(s) 344, 977
AccBSI CCGCTC 2 cut(s) 611, 1048
AccI GTMKAC 2 cut(s) 501, 789
AciI CCGC 2 cut(s) 611, 1046
AclWI GGATC 2 cut(s) 270, 998
AcyI GRCGYC 1 cut(s) 800
AfaI GTAC 3 cut(s) 416, 833, 1044
AfiI CCNNNNNNNGG 3 cut(s) 344, 809, 977
AflII CTTAAG 1 cut(s) 446
AflIII ACRYGT 1 cut(s) 504
AgsI TTSAA 8 cut(s) 78, 139, 179, 434, 599, 1025, 1033, 1057
AjnI CCWGG 4 cut(s) 183, 246, 808, 937
AleI CACNNNNGTG 1 cut(s) 1016
AluBI AGCT 5 cut(s) 54, 221, 328, 440, 916
AluI AGCT 5 cut(s) 54, 221, 328, 440, 916
Alw26I GTCTC 1 cut(s) 626
AlwI GGATC 2 cut(s) 270, 998
AlwNI CAGNNNCTG 1 cut(s) 815
Ama87I CYCGRG 1 cut(s) 620
AoxI GGCC 2 cut(s) 244, 469
ApeKI GCWGC 7 cut(s) 68, 114, 218, 305, 308, 558, 920
ArsI GACNNNNNNTTYG 2 cut(s) 761, 793
Asp700I GAANNNNTTC 1 cut(s) 671
AspS9I GGNCC 1 cut(s) 812
AsuC2I CCSGG 1 cut(s) 866
AsuHPI GGTGA 1 cut(s) 359
AsuNHI GCTAGC 1 cut(s) 916
AvaI CYCGRG 1 cut(s) 620
AvaII GGWCC 1 cut(s) 812
BbsI GAAGAC 2 cut(s) 483, 621
BbvI GCAGC 7 cut(s) 55, 101, 230, 292, 295, 570, 932
BccI CCATC 4 cut(s) 338, 346, 420, 560
BciT130I CCWGG 4 cut(s) 185, 248, 810, 939
BciVI GTATCC 1 cut(s) 874
BcnI CCSGG 1 cut(s) 866
BcoDI GTCTC 1 cut(s) 626
BfaI CTAG 2 cut(s) 296, 917
BfrI CTTAAG 1 cut(s) 446
BfuAI ACCTGC 2 cut(s) 73, 452
BfuI GTATCC 1 cut(s) 874
BglII AGATCT 2 cut(s) 86, 973
BisI GCNGC 7 cut(s) 69, 115, 219, 306, 309, 559, 921
BlpI GCTNAGC 1 cut(s) 912
BlsI GCNGC 7 cut(s) 70, 116, 220, 307, 310, 560, 922
Bme1390I CCNGG 5 cut(s) 185, 248, 810, 866, 939
Bme18I GGWCC 1 cut(s) 812
BmeT110I CYCGRG 1 cut(s) 620
BmgT120I GGNCC 1 cut(s) 812
BmiI GGNNCC 1 cut(s) 763
BmrFI CCNGG 5 cut(s) 185, 248, 810, 866, 939
BmsI GCATC 1 cut(s) 898
BmtI GCTAGC 1 cut(s) 920
BpiI GAAGAC 2 cut(s) 483, 621
BpmI CTGGAG 1 cut(s) 780
Bpu1102I GCTNAGC 1 cut(s) 912
BpuEI CTTGAG 2 cut(s) 16, 778
BpuMI CCSGG 1 cut(s) 866
BsaHI GRCGYC 1 cut(s) 800
BsaJI CCNNGG 2 cut(s) 162, 247
Bsc4I CCNNNNNNNGG 3 cut(s) 344, 809, 977
Bse1I ACTGG 3 cut(s) 38, 964, 997
Bse3DI GCAATG 1 cut(s) 484
BseBI CCWGG 4 cut(s) 185, 248, 810, 939
BseDI CCNNGG 2 cut(s) 162, 247
BseLI CCNNNNNNNGG 3 cut(s) 344, 809, 977
BseMI GCAATG 1 cut(s) 484
BseMII CTCAG 5 cut(s) 138, 251, 506, 807, 903
BseNI ACTGG 3 cut(s) 38, 964, 997
BseXI GCAGC 7 cut(s) 55, 101, 230, 292, 295, 570, 932
BshFI GGCC 2 cut(s) 246, 471
BsiHKCI CYCGRG 1 cut(s) 620
BsiSI CCGG 1 cut(s) 866
BslI CCNNNNNNNGG 3 cut(s) 344, 809, 977
BsmAI GTCTC 1 cut(s) 626
BsnI GGCC 2 cut(s) 246, 471
BsoBI CYCGRG 1 cut(s) 620
Bsp143I GATC 4 cut(s) 86, 262, 973, 1003
Bsp1720I GCTNAGC 1 cut(s) 912
BspACI CCGC 2 cut(s) 611, 1046
BspANI GGCC 2 cut(s) 246, 471
BspCNI CTCAG 5 cut(s) 139, 250, 505, 808, 904
BspLI GGNNCC 1 cut(s) 763
BspMI ACCTGC 2 cut(s) 73, 452
BspOI GCTAGC 1 cut(s) 920
BspPI GGATC 2 cut(s) 270, 998
BspTI CTTAAG 1 cut(s) 446
BsrBI CCGCTC 2 cut(s) 611, 1048
BsrDI GCAATG 1 cut(s) 484
BsrI ACTGG 3 cut(s) 38, 964, 997
BssECI CCNNGG 2 cut(s) 162, 247
BssMI GATC 4 cut(s) 86, 262, 973, 1003
BssNAI GTATAC 2 cut(s) 502, 790
BssNI GRCGYC 1 cut(s) 800
BssT1I CCWWGG 1 cut(s) 162
Bst1107I GTATAC 2 cut(s) 502, 790
Bst2UI CCWGG 4 cut(s) 185, 248, 810, 939
Bst4CI ACNGT 3 cut(s) 106, 482, 896
Bst6I CTCTTC 1 cut(s) 339
BstACI GRCGYC 1 cut(s) 800
BstAFI CTTAAG 1 cut(s) 446
BstC8I GCNNGC 2 cut(s) 244, 918
BstDEI CTNAG 7 cut(s) 147, 237, 393, 492, 640, 816, 912
BstKTI GATC 4 cut(s) 89, 265, 976, 1006
BstMAI GTCTC 1 cut(s) 626
BstMBI GATC 4 cut(s) 86, 262, 973, 1003
BstMWI GCNNNNNNNGC 1 cut(s) 917
BstNI CCWGG 4 cut(s) 185, 248, 810, 939
BstSCI CCNGG 5 cut(s) 183, 246, 808, 864, 937
BstV1I GCAGC 7 cut(s) 55, 101, 230, 292, 295, 570, 932
BstV2I GAAGAC 2 cut(s) 483, 621
BstX2I RGATCY 3 cut(s) 86, 262, 973
BstYI RGATCY 3 cut(s) 86, 262, 973
BstZ17I GTATAC 2 cut(s) 502, 790
BsuI GTATCC 1 cut(s) 874
BsuRI GGCC 2 cut(s) 246, 471
BtgZI GCGATG 1 cut(s) 808
BtsIMutI CAGTG 1 cut(s) 953
BveI ACCTGC 2 cut(s) 73, 452
Cac8I GCNNGC 2 cut(s) 244, 918
CaiI CAGNNNCTG 1 cut(s) 815
Cfr13I GGNCC 1 cut(s) 812
CseI GACGC 1 cut(s) 808
Csp6I GTAC 3 cut(s) 415, 832, 1043
CviAII CATG 4 cut(s) 385, 554, 925, 934
CviQI GTAC 3 cut(s) 415, 832, 1043
DdeI CTNAG 7 cut(s) 147, 237, 393, 492, 640, 816, 912
DpnI GATC 4 cut(s) 88, 264, 975, 1005
DpnII GATC 4 cut(s) 86, 262, 973, 1003
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
Eco130I CCWWGG 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 812
Eco88I CYCGRG 1 cut(s) 620
EcoO109I RGGNCCY 1 cut(s) 812
EcoRII CCWGG 4 cut(s) 183, 246, 808, 937
EcoT14I CCWWGG 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 4 cut(s) 388, 557, 928, 937
FalI AAGNNNNNCTT 2 cut(s) 827, 859
FatI CATG 4 cut(s) 384, 553, 924, 933
FblI GTMKAC 2 cut(s) 501, 789
Fnu4HI GCNGC 7 cut(s) 69, 115, 219, 306, 309, 559, 921
Fsp4HI GCNGC 7 cut(s) 69, 115, 219, 306, 309, 559, 921
FspBI CTAG 2 cut(s) 296, 917
GluI GCNGC 7 cut(s) 69, 115, 219, 306, 309, 559, 921
GsuI CTGGAG 1 cut(s) 780
HaeIII GGCC 2 cut(s) 246, 471
HapII CCGG 1 cut(s) 866
HgaI GACGC 1 cut(s) 808
Hin1I GRCGYC 1 cut(s) 800
Hin1II CATG 4 cut(s) 388, 557, 928, 937
HindIII AAGCTT 1 cut(s) 52
HinfI GANTC 7 cut(s) 142, 169, 331, 350, 356, 521, 582
HpaII CCGG 1 cut(s) 866
HphI GGTGA 1 cut(s) 359
Hpy166II GTNNAC 2 cut(s) 502, 790
Hpy188I TCNGA 4 cut(s) 282, 343, 355, 587
Hpy188III TCNNGA 7 cut(s) 33, 126, 146, 420, 622, 759, 971
Hpy8I GTNNAC 2 cut(s) 502, 790
HpyAV CCTTC 3 cut(s) 123, 511, 1018
HpyCH4III ACNGT 3 cut(s) 106, 482, 896
HpyCH4IV ACGT 1 cut(s) 506
HpyCH4V TGCA 3 cut(s) 218, 461, 489
HpyF10VI GCNNNNNNNGC 1 cut(s) 917
HpyF3I CTNAG 7 cut(s) 147, 237, 393, 492, 640, 816, 912
HpySE526I ACGT 1 cut(s) 506
Hsp92I GRCGYC 1 cut(s) 800
Hsp92II CATG 4 cut(s) 388, 557, 928, 937
Kzo9I GATC 4 cut(s) 86, 262, 973, 1003
LmnI GCTCC 3 cut(s) 608, 761, 946
Lsp1109I GCAGC 7 cut(s) 55, 101, 230, 292, 295, 570, 932
LweI GCATC 1 cut(s) 898
MaeI CTAG 2 cut(s) 296, 917
MaeII ACGT 1 cut(s) 506
MaeIII GTNAC 3 cut(s) 100, 347, 901
MalI GATC 4 cut(s) 88, 264, 975, 1005
MbiI CCGCTC 2 cut(s) 611, 1048
MboI GATC 4 cut(s) 86, 262, 973, 1003
MboII GAAGA 8 cut(s) 36, 114, 151, 326, 435, 488, 626, 1045
MflI RGATCY 3 cut(s) 86, 262, 973
MluCI AATT 1 cut(s) 851
MlyI GAGTC 2 cut(s) 325, 344
MmeI TCCRAC 1 cut(s) 240
MnlI CCTC 6 cut(s) 38, 106, 186, 374, 581, 629
MroXI GAANNNNTTC 1 cut(s) 671
MseI TTAA 5 cut(s) 11, 152, 447, 660, 983
MslI CAYNNNNRTG 1 cut(s) 1016
MspCI CTTAAG 1 cut(s) 446
MspI CCGG 1 cut(s) 866
MspR9I CCNGG 5 cut(s) 185, 248, 810, 866, 939
MvaI CCWGG 4 cut(s) 185, 248, 810, 939
MwoI GCNNNNNNNGC 1 cut(s) 917
NciI CCSGG 1 cut(s) 866
NdeII GATC 4 cut(s) 86, 262, 973, 1003
NheI GCTAGC 1 cut(s) 916
NlaIII CATG 4 cut(s) 388, 557, 928, 937
NlaIV GGNNCC 1 cut(s) 763
NmuCI GTSAC 3 cut(s) 100, 347, 901
OliI CACNNNNGTG 1 cut(s) 1016
PaeR7I CTCGAG 1 cut(s) 620
PaqCI CACCTGC 1 cut(s) 73
PcsI WCGNNNNNNNCGW 1 cut(s) 627
PdmI GAANNNNTTC 1 cut(s) 671
PfeI GAWTC 5 cut(s) 142, 169, 356, 521, 582
PflMI CCANNNNNTGG 2 cut(s) 344, 977
PfoI TCCNGGA 1 cut(s) 808
PkrI GCNGC 7 cut(s) 70, 116, 220, 307, 310, 560, 922
PleI GAGTC 2 cut(s) 325, 344
PpsI GAGTC 2 cut(s) 325, 344
PpuMI RGGWCCY 1 cut(s) 812
Psp5II RGGWCCY 1 cut(s) 812
Psp6I CCWGG 4 cut(s) 183, 246, 808, 937
PspGI CCWGG 4 cut(s) 183, 246, 808, 937
PspN4I GGNNCC 1 cut(s) 763
PspPI GGNCC 1 cut(s) 812
PspPPI RGGWCCY 1 cut(s) 812
PstNI CAGNNNCTG 1 cut(s) 815
PsuI RGATCY 3 cut(s) 86, 262, 973
RsaI GTAC 3 cut(s) 416, 833, 1044
RsaNI GTAC 3 cut(s) 415, 832, 1043
RseI CAYNNNNRTG 1 cut(s) 1016
SaqAI TTAA 5 cut(s) 11, 152, 447, 660, 983
SatI GCNGC 7 cut(s) 69, 115, 219, 306, 309, 559, 921
Sau3AI GATC 4 cut(s) 86, 262, 973, 1003
Sau96I GGNCC 1 cut(s) 812
SchI GAGTC 2 cut(s) 325, 344
ScrFI CCNGG 5 cut(s) 185, 248, 810, 866, 939
SfaNI GCATC 1 cut(s) 898
Sfr274I CTCGAG 1 cut(s) 620
SinI GGWCC 1 cut(s) 812
SlaI CTCGAG 1 cut(s) 620
SmiMI CAYNNNNRTG 1 cut(s) 1016
SmlI CTYRAG 4 cut(s) 31, 446, 620, 793
SmoI CTYRAG 4 cut(s) 31, 446, 620, 793
Sse9I AATT 1 cut(s) 851
SsiI CCGC 2 cut(s) 611, 1046
SspMI CTAG 2 cut(s) 296, 917
StyD4I CCNGG 5 cut(s) 183, 246, 808, 864, 937
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 3 cut(s) 106, 482, 896
TaiI ACGT 1 cut(s) 509
TaqI TCGA 1 cut(s) 621
TasI AATT 1 cut(s) 851
TatI WGTACW 1 cut(s) 831
TfiI GAWTC 5 cut(s) 142, 169, 356, 521, 582
Tru1I TTAA 5 cut(s) 11, 152, 447, 660, 983
Tru9I TTAA 5 cut(s) 11, 152, 447, 660, 983
TscAI CASTG 1 cut(s) 960
TseFI GTSAC 3 cut(s) 100, 347, 901
TseI GCWGC 7 cut(s) 68, 114, 218, 305, 308, 558, 920
Tsp45I GTSAC 3 cut(s) 100, 347, 901
TspDTI ATGAA 3 cut(s) 530, 542, 811
TspRI CASTG 1 cut(s) 960
Van91I CCANNNNNTGG 2 cut(s) 344, 977
Vha464I CTTAAG 1 cut(s) 446
VpaK11BI GGWCC 1 cut(s) 812
XcmI CCANNNNNNNNNTGG 1 cut(s) 940
XhoI CTCGAG 1 cut(s) 620
XmiI GTMKAC 2 cut(s) 501, 789
XmnI GAANNNNTTC 1 cut(s) 671
XspI CTAG 2 cut(s) 296, 917
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.