FvH4_3g22121
ERF Family

Belongs to the calycin superfamily. Lipocalin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0009620
Physical Location & Seq
Forward (+)
15177335 .. 15180791
3457 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g22121.t1

Sequence Viewer

Length: 1011 bp
ATGGTTCATGCTCTTTTACAAACTGCACCACTTCTCCTCCAGTTTTCTCGTCCAAATCCTCATGTCTCTTCCTGTAGGGGAAAGCCTGGGAACATAGTGATGAATTGCTCTCCAGAGAAATCTATGAGCAACAGGCCAGTGACCATACATGTATTATCTGGGTTTGCAGCGTCTTTAGTACTTCTCTCTCAAATAAACCAGGCTGTTGCATCAGAAATTTACTTTCAAAGAAATACTTATGAGCTTGCAAATGCTGCTGACAAGACGGTGACTCTTCCGCTGGATAAGGGTTCTGATGAAGGAACTGAGAAGCTAATGATGATGAGAGGCATGACAGCAAACAATTTTGACCCCATTAGATATTCTGGAAGGTGGTATGAAGTGGCTTCACTTAAACGTGGATTTGCTGGGCAAGGTCAGGAAGACTGTCACTGCACCCAGGGTGTATATACCTTTGATATTGAGAAGAAGGCCATCCAGGTTGATACCTTCTGTGTTCATGGGTCTCCTGACGGATATATAACTGGCATAAGAGGAAATGTTCAATGCGTTTCAGATAAAGATTTGGAAAAGAATGAGACAGATCTAGAAATGCAGGAGATGATCAAAGAGAAGTGTTTCCTCCGTTTTCCAACATTGCCATTTATCCCTAAGTTGCCGTATGATGTGATTGCAACTGATTATGACAATTTTGCTCTTGTTTCAGGAGCAAAAGATACAGGTTTCATACAGATATACTCCAGAACACCAACTCCTGGTCCTGAATTCATAGAGAAGTACAAATCATACTTGGCCAACTTTGGATATGACCCGACCAAAATCAAGGACACCCCACAAGACTGTGAAGTGATGTCGGACAGTCGGCTATCTGCAATGATGTCAATGACCGGAATGCAAAAAATTTTAACAAATGAGTTTCCTGATCTAGGATTGAAGCGCTCTGTTCAATTTGACCCCTTCACTAGTGTATTTGACACTCTGAAGAAGCTTGTTCAGCTTTACTTCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000302 GO:0001101 GO:0001817 GO:0001818 GO:0001952 GO:0001953 GO:0002682 GO:0002683 GO:0002685 GO:0002686 GO:0003006 GO:0003674 GO:0005488 GO:0005496 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0005975 GO:0005996 GO:0006006 GO:0006629 GO:0006950 GO:0006979 GO:0007162 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0007568 GO:0008150 GO:0008152 GO:0008285 GO:0008289 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009611 GO:0009628 GO:0009635 GO:0009636 GO:0009642 GO:0009644 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009888 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010117 GO:0010154 GO:0010431 GO:0010565 GO:0010605 GO:0010640 GO:0010642 GO:0010646 GO:0010648 GO:0010810 GO:0010812 GO:0012505 GO:0014012 GO:0015485 GO:0016020 GO:0016043 GO:0019216 GO:0019217 GO:0019222 GO:0019318 GO:0021700 GO:0022008 GO:0022414 GO:0022626 GO:0023051 GO:0023057 GO:0030030 GO:0030154 GO:0030155 GO:0030182 GO:0030334 GO:0030336 GO:0030425 GO:0031099 GO:0031102 GO:0031103 GO:0031175 GO:0031323 GO:0031324 GO:0031347 GO:0031348 GO:0031976 GO:0031977 GO:0031984 GO:0032101 GO:0032102 GO:0032386 GO:0032387 GO:0032501 GO:0032502 GO:0032504 GO:0032642 GO:0032682 GO:0032879 GO:0032880 GO:0032934 GO:0032991 GO:0033157 GO:0033554 GO:0033993 GO:0034357 GO:0034442 GO:0034443 GO:0036094 GO:0036477 GO:0040007 GO:0040012 GO:0040013 GO:0042060 GO:0042127 GO:0042221 GO:0042246 GO:0042306 GO:0042308 GO:0042493 GO:0042651 GO:0042995 GO:0043005 GO:0043025 GO:0043178 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044087 GO:0044238 GO:0044281 GO:0044297 GO:0044421 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044445 GO:0044446 GO:0044463 GO:0044464 GO:0045833 GO:0045922 GO:0046320 GO:0046322 GO:0046822 GO:0046823 GO:0048316 GO:0048468 GO:0048471 GO:0048513 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0048608 GO:0048609 GO:0048660 GO:0048662 GO:0048666 GO:0048678 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050727 GO:0050728 GO:0050746 GO:0050748 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051223 GO:0051224 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051270 GO:0051271 GO:0051716 GO:0051893 GO:0051895 GO:0055035 GO:0060255 GO:0060322 GO:0060341 GO:0060587 GO:0060588 GO:0061458 GO:0061564 GO:0062012 GO:0062014 GO:0065007 GO:0070201 GO:0071637 GO:0071638 GO:0071695 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090087 GO:0090109 GO:0090317 GO:0097159 GO:0097305 GO:0097447 GO:0097458 GO:0120025 GO:0120036 GO:0120038 GO:1900015 GO:1900016 GO:1900180 GO:1900181 GO:1901562 GO:1901700 GO:1901888 GO:1901889 GO:1903391 GO:1903392 GO:1903827 GO:1903828 GO:1904589 GO:1904590 GO:1904950 GO:1990904 GO:2000097 GO:2000098 GO:2000145 GO:2000146 GO:2000401 GO:2000402 GO:2000404 GO:2000405
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipocalin_2

Protein Analysis

337

Amino Acids

37.73

Weight (kDa)

6.01

Isoelectric Point (pI)

33.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipocalin_2 PF08212 119 - 279 7.8e-10 Lipocalin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 755
AciI CCGC 1 cut(s) 278
AcoI YGGCCR 1 cut(s) 792
AcsI RAATTY 3 cut(s) 216, 764, 900
AcuI CTGAAG 1 cut(s) 1001
AfaI GTAC 2 cut(s) 180, 779
AfeI AGCGCT 1 cut(s) 938
AfiI CCNNNNNNNGG 2 cut(s) 755, 926
AflIII ACRYGT 1 cut(s) 148
AgsI TTSAA 5 cut(s) 227, 545, 934, 947, 1006
AhlI ACTAGT 1 cut(s) 962
AjnI CCWGG 5 cut(s) 85, 198, 438, 477, 754
AloI GAACNNNNNNTCC 2 cut(s) 736, 768
AluBI AGCT 4 cut(s) 244, 313, 988, 997
AluI AGCT 4 cut(s) 244, 313, 988, 997
Alw26I GTCTC 3 cut(s) 70, 510, 572
Aor51HI AGCGCT 1 cut(s) 938
AoxI GGCC 3 cut(s) 134, 471, 792
ApeKI GCWGC 2 cut(s) 167, 254
ApoI RAATTY 3 cut(s) 216, 764, 900
Asp700I GAANNNNTTC 1 cut(s) 617
AspLEI GCGC 1 cut(s) 939
AspS9I GGNCC 1 cut(s) 758
AsuHPI GGTGA 1 cut(s) 280
AvaII GGWCC 1 cut(s) 758
BalI TGGCCA 1 cut(s) 794
BbsI GAAGAC 1 cut(s) 429
BbvI GCAGC 2 cut(s) 179, 241
BccI CCATC 1 cut(s) 482
BceAI ACGGC 1 cut(s) 643
BciT130I CCWGG 5 cut(s) 87, 200, 440, 479, 756
BclI TGATCA 1 cut(s) 603
BcoDI GTCTC 3 cut(s) 70, 510, 572
BcuI ACTAGT 1 cut(s) 962
BfaI CTAG 3 cut(s) 587, 926, 963
BfmI CTRYAG 1 cut(s) 73
BfoI RGCGCY 1 cut(s) 940
BglII AGATCT 1 cut(s) 583
BisI GCNGC 2 cut(s) 168, 255
BlsI GCNGC 2 cut(s) 169, 256
BmcAI AGTACT 1 cut(s) 180
Bme1390I CCNGG 5 cut(s) 87, 200, 440, 479, 756
Bme18I GGWCC 1 cut(s) 758
BmgT120I GGNCC 1 cut(s) 758
BmrFI CCNGG 5 cut(s) 87, 200, 440, 479, 756
BmsI GCATC 1 cut(s) 218
BpiI GAAGAC 1 cut(s) 429
BpmI CTGGAG 3 cut(s) 23, 96, 724
BsaI GGTCTC 1 cut(s) 510
BsaJI CCNNGG 3 cut(s) 86, 438, 439
BsaWI WCCGGW 1 cut(s) 887
BsaXI ACNNNNNCTCC 6 cut(s) 18, 21, 48, 51, 736, 766
Bsc4I CCNNNNNNNGG 2 cut(s) 755, 926
Bse1I ACTGG 3 cut(s) 40, 137, 529
Bse3DI GCAATG 2 cut(s) 635, 879
BseBI CCWGG 5 cut(s) 87, 200, 440, 479, 756
BseDI CCNNGG 3 cut(s) 86, 438, 439
BseGI GGATG 1 cut(s) 474
BseLI CCNNNNNNNGG 2 cut(s) 755, 926
BseMI GCAATG 2 cut(s) 635, 879
BseMII CTCAG 1 cut(s) 297
BseNI ACTGG 3 cut(s) 40, 137, 529
BseRI GAGGAG 1 cut(s) 26
BseXI GCAGC 2 cut(s) 179, 241
BseYI CCCAGC 1 cut(s) 407
BsgI GTGCAG 2 cut(s) 9, 418
BshFI GGCC 3 cut(s) 136, 473, 794
BsiSI CCGG 1 cut(s) 888
BslI CCNNNNNNNGG 2 cut(s) 755, 926
BsmAI GTCTC 3 cut(s) 70, 510, 572
BsmI GAATGC 1 cut(s) 897
BsnI GGCC 3 cut(s) 136, 473, 794
Bso31I GGTCTC 1 cut(s) 510
Bsp143I GATC 3 cut(s) 583, 603, 922
BspACI CCGC 1 cut(s) 278
BspANI GGCC 3 cut(s) 136, 473, 794
BspCNI CTCAG 1 cut(s) 298
BspTNI GGTCTC 1 cut(s) 510
BsrDI GCAATG 2 cut(s) 635, 879
BsrI ACTGG 3 cut(s) 40, 137, 529
BssECI CCNNGG 3 cut(s) 86, 438, 439
BssMI GATC 3 cut(s) 583, 603, 922
Bst2UI CCWGG 5 cut(s) 87, 200, 440, 479, 756
Bst4CI ACNGT 4 cut(s) 268, 428, 842, 860
Bst6I CTCTTC 2 cut(s) 73, 279
BstAPI GCANNNNNTGC 1 cut(s) 254
BstC8I GCNNGC 1 cut(s) 246
BstDEI CTNAG 2 cut(s) 306, 651
BstENI CCTNNNNNAGG 1 cut(s) 924
BstF5I GGATG 1 cut(s) 474
BstH2I RGCGCY 1 cut(s) 940
BstHHI GCGC 1 cut(s) 939
BstKTI GATC 3 cut(s) 586, 606, 925
BstMAI GTCTC 3 cut(s) 70, 510, 572
BstMBI GATC 3 cut(s) 583, 603, 922
BstMWI GCNNNNNNNGC 2 cut(s) 254, 994
BstNI CCWGG 5 cut(s) 87, 200, 440, 479, 756
BstNSI RCATGY 1 cut(s) 152
BstSCI CCNGG 5 cut(s) 85, 198, 438, 477, 754
BstSFI CTRYAG 1 cut(s) 73
BstV1I GCAGC 2 cut(s) 179, 241
BstV2I GAAGAC 1 cut(s) 429
BstX2I RGATCY 1 cut(s) 583
BstYI RGATCY 1 cut(s) 583
BsuRI GGCC 3 cut(s) 136, 473, 794
BtsCI GGATG 1 cut(s) 474
BtsI GCAGTG 1 cut(s) 430
BtsIMutI CAGTG 2 cut(s) 144, 430
Cac8I GCNNGC 1 cut(s) 246
CfoI GCGC 1 cut(s) 939
Cfr13I GGNCC 1 cut(s) 758
CseI GACGC 1 cut(s) 159
Csp6I GTAC 2 cut(s) 179, 778
CviAII CATG 5 cut(s) 8, 62, 149, 331, 500
CviQI GTAC 2 cut(s) 179, 778
DdeI CTNAG 2 cut(s) 306, 651
DpnI GATC 3 cut(s) 585, 605, 924
DpnII GATC 3 cut(s) 583, 603, 922
EaeI YGGCCR 1 cut(s) 792
Eam1104I CTCTTC 2 cut(s) 73, 279
EarI CTCTTC 2 cut(s) 73, 279
Eco31I GGTCTC 1 cut(s) 510
Eco47I GGWCC 1 cut(s) 758
Eco47III AGCGCT 1 cut(s) 938
Eco57I CTGAAG 1 cut(s) 1001
EcoNI CCTNNNNNAGG 1 cut(s) 924
EcoRI GAATTC 1 cut(s) 764
EcoRII CCWGG 5 cut(s) 85, 198, 438, 477, 754
FaeI CATG 5 cut(s) 11, 65, 152, 334, 503
FalI AAGNNNNNCTT 2 cut(s) 220, 252
FatI CATG 5 cut(s) 7, 61, 148, 330, 499
FbaI TGATCA 1 cut(s) 603
Fnu4HI GCNGC 2 cut(s) 168, 255
FokI GGATG 1 cut(s) 461
Fsp4HI GCNGC 2 cut(s) 168, 255
FspBI CTAG 3 cut(s) 587, 926, 963
GlaI GCGC 1 cut(s) 938
GluI GCNGC 2 cut(s) 168, 255
GsaI CCCAGC 1 cut(s) 411
GsuI CTGGAG 3 cut(s) 23, 96, 724
HaeII RGCGCY 1 cut(s) 940
HaeIII GGCC 3 cut(s) 136, 473, 794
HapII CCGG 1 cut(s) 888
HgaI GACGC 1 cut(s) 159
HhaI GCGC 1 cut(s) 939
Hin1II CATG 5 cut(s) 11, 65, 152, 334, 503
Hin6I GCGC 1 cut(s) 937
HinP1I GCGC 1 cut(s) 937
HindIII AAGCTT 1 cut(s) 986
HinfI GANTC 1 cut(s) 271
HpaII CCGG 1 cut(s) 888
HphI GGTGA 1 cut(s) 280
Hpy188I TCNGA 5 cut(s) 214, 295, 556, 856, 981
Hpy188III TCNNGA 9 cut(s) 113, 366, 419, 509, 587, 705, 741, 761, 920
HpyAV CCTTC 5 cut(s) 293, 363, 463, 499, 967
HpyCH4III ACNGT 4 cut(s) 268, 428, 842, 860
HpyCH4IV ACGT 1 cut(s) 397
HpyCH4V TGCA 9 cut(s) 26, 167, 209, 248, 435, 595, 674, 872, 895
HpyF10VI GCNNNNNNNGC 2 cut(s) 254, 994
HpyF3I CTNAG 2 cut(s) 306, 651
HpySE526I ACGT 1 cut(s) 397
Hsp92II CATG 5 cut(s) 11, 65, 152, 334, 503
HspAI GCGC 1 cut(s) 937
Ksp22I TGATCA 1 cut(s) 603
Kzo9I GATC 3 cut(s) 583, 603, 922
LmnI GCTCC 1 cut(s) 707
Lsp1109I GCAGC 2 cut(s) 179, 241
LweI GCATC 1 cut(s) 218
MaeI CTAG 3 cut(s) 587, 926, 963
MaeII ACGT 1 cut(s) 397
MaeIII GTNAC 3 cut(s) 139, 268, 428
MalI GATC 3 cut(s) 585, 605, 924
MboI GATC 3 cut(s) 583, 603, 922
MboII GAAGA 5 cut(s) 60, 266, 434, 478, 994
MflI RGATCY 1 cut(s) 583
MlsI TGGCCA 1 cut(s) 794
MluCI AATT 7 cut(s) 103, 216, 343, 688, 764, 900, 947
MluNI TGGCCA 1 cut(s) 794
MlyI GAGTC 1 cut(s) 265
MmeI TCCRAC 2 cut(s) 656, 834
MnlI CCTC 5 cut(s) 47, 69, 320, 527, 632
Mox20I TGGCCA 1 cut(s) 794
MroXI GAANNNNTTC 1 cut(s) 617
MscI TGGCCA 1 cut(s) 794
MseI TTAA 2 cut(s) 393, 905
MslI CAYNNNNRTG 1 cut(s) 98
Msp20I TGGCCA 1 cut(s) 794
MspA1I CMGCKG 1 cut(s) 280
MspI CCGG 1 cut(s) 888
MspR9I CCNGG 5 cut(s) 87, 200, 440, 479, 756
Mva1269I GAATGC 1 cut(s) 897
MvaI CCWGG 5 cut(s) 87, 200, 440, 479, 756
MwoI GCNNNNNNNGC 2 cut(s) 254, 994
NdeII GATC 3 cut(s) 583, 603, 922
NlaIII CATG 5 cut(s) 11, 65, 152, 334, 503
NmuCI GTSAC 3 cut(s) 139, 268, 428
NspI RCATGY 1 cut(s) 152
PasI CCCWGGG 1 cut(s) 439
PciI ACATGT 1 cut(s) 148
PctI GAATGC 1 cut(s) 897
PdmI GAANNNNTTC 1 cut(s) 617
PflMI CCANNNNNTGG 1 cut(s) 755
PkrI GCNGC 2 cut(s) 169, 256
PleI GAGTC 1 cut(s) 265
PpsI GAGTC 1 cut(s) 265
PscI ACATGT 1 cut(s) 148
Psp6I CCWGG 5 cut(s) 85, 198, 438, 477, 754
PspFI CCCAGC 1 cut(s) 407
PspGI CCWGG 5 cut(s) 85, 198, 438, 477, 754
PspPI GGNCC 1 cut(s) 758
PsuI RGATCY 1 cut(s) 583
RsaI GTAC 2 cut(s) 180, 779
RsaNI GTAC 2 cut(s) 179, 778
RseI CAYNNNNRTG 1 cut(s) 98
SaqAI TTAA 2 cut(s) 393, 905
SatI GCNGC 2 cut(s) 168, 255
Sau3AI GATC 3 cut(s) 583, 603, 922
Sau96I GGNCC 1 cut(s) 758
ScaI AGTACT 1 cut(s) 180
SchI GAGTC 1 cut(s) 265
ScrFI CCNGG 5 cut(s) 87, 200, 440, 479, 756
SfaNI GCATC 1 cut(s) 218
SfcI CTRYAG 1 cut(s) 73
SinI GGWCC 1 cut(s) 758
SmiMI CAYNNNNRTG 1 cut(s) 98
SpeI ACTAGT 1 cut(s) 962
Sse9I AATT 7 cut(s) 103, 216, 343, 688, 764, 900, 947
SsiI CCGC 1 cut(s) 278
SspMI CTAG 3 cut(s) 587, 926, 963
StyD4I CCNGG 5 cut(s) 85, 198, 438, 477, 754
TaaI ACNGT 4 cut(s) 268, 428, 842, 860
TaiI ACGT 1 cut(s) 400
TasI AATT 7 cut(s) 103, 216, 343, 688, 764, 900, 947
TatI WGTACW 2 cut(s) 178, 777
Tru1I TTAA 2 cut(s) 393, 905
Tru9I TTAA 2 cut(s) 393, 905
TscAI CASTG 2 cut(s) 144, 437
TseFI GTSAC 3 cut(s) 139, 268, 428
TseI GCWGC 2 cut(s) 167, 254
Tsp45I GTSAC 3 cut(s) 139, 268, 428
TspDTI ATGAA 6 cut(s) 116, 312, 393, 488, 715, 757
TspGWI ACGGA 2 cut(s) 528, 614
TspRI CASTG 2 cut(s) 144, 437
Van91I CCANNNNNTGG 1 cut(s) 755
VpaK11BI GGWCC 1 cut(s) 758
XagI CCTNNNNNAGG 1 cut(s) 924
XapI RAATTY 3 cut(s) 216, 764, 900
XbaI TCTAGA 1 cut(s) 586
XceI RCATGY 1 cut(s) 152
XmnI GAANNNNTTC 1 cut(s) 617
XspI CTAG 3 cut(s) 587, 926, 963
ZrmI AGTACT 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.