Rh5BG261100
ERF Family

Belongs to the calycin superfamily. Lipocalin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0009620
Physical Location & Seq
Forward (+)
32713213 .. 32717145
3933 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG261100.1

Sequence Viewer

Length: 930 bp
ATGGAGTTTTTGAAATTAGTCCACATTAGATTCCTGTACGGTAGTGATACAAGAAGATTAGATACTTGTTCCATTGCAGGAGCTAGAGGGTACCTGATGCCTTTTACTGCTTTTGGGCAGGCTGTTGCATCAGAAGTTTACTTTCAAAGAAATACTTATGAGCTTGCAAATGCTGCTGAGAAGACAGTGACTCTTCCTCTTGATAAGGGTTCTGATGAAGGAGCTGAGAGGCTAATGATGATGAGAGGCATGACAGCAAACAATTTTGACCCCATTAGATATTCTGGTAGGTGGTATGAAGTTGCTTCACTTAAACGTGGATTTGCTGGGCAAGGTCAGGAAGACTGTCATTGCACCCAGGGTGTATATACCTTTGATATTGAGAAGAGGGCCATCCAGGTTGATACCTTCTGTGTTCATGGGTCTCCTGAAGGTTATATAACTGGCATAAGGGGAAACGTTCAATGCCTTTCAGATAAAGATTTGGAAAAGAATGAGTCAGATCTAGAAATGCAGGAGATGATCAAAGAGAAGTGTTTCCTCCGTTTTCCAACATTGCCATTTATCCCTAAGTTGCCGTATGATGTGATCGCAACTGATTATGACAATTTTGCTCTTGTTTCAGGAGCAAAAGATACAGGTTTCATACAGATCTACTCCAGAACACCAACTCCTGGTCCTGAATTCATAGAGAAGTACAAATCATACTTGGCCAACTTTGGATATGACCCAACCAAAATCAAGGACACCCCACAAGACTGTGAAGTGATGTCGGACAGTCGGCTAGCTGCAATGATGTCAATGTCCGGAATGCAAAAATTTTTAACAAATGAGTTTCCTGATCTAGAATTGAAGCGCCCTGTTCAATTCGACCCCTTCACTAGTGTATTTGACACTCTGAAGAAGCTTGTTCAGCTTTATTTCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000302 GO:0001101 GO:0001817 GO:0001818 GO:0001952 GO:0001953 GO:0002682 GO:0002683 GO:0002685 GO:0002686 GO:0003006 GO:0003674 GO:0005488 GO:0005496 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0005975 GO:0005996 GO:0006006 GO:0006629 GO:0006950 GO:0006979 GO:0007162 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0007568 GO:0008150 GO:0008152 GO:0008285 GO:0008289 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009611 GO:0009628 GO:0009635 GO:0009636 GO:0009642 GO:0009644 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009888 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010117 GO:0010154 GO:0010431 GO:0010565 GO:0010605 GO:0010640 GO:0010642 GO:0010646 GO:0010648 GO:0010810 GO:0010812 GO:0012505 GO:0014012 GO:0015485 GO:0016020 GO:0016043 GO:0019216 GO:0019217 GO:0019222 GO:0019318 GO:0021700 GO:0022008 GO:0022414 GO:0022626 GO:0023051 GO:0023057 GO:0030030 GO:0030154 GO:0030155 GO:0030182 GO:0030334 GO:0030336 GO:0030425 GO:0031099 GO:0031102 GO:0031103 GO:0031175 GO:0031323 GO:0031324 GO:0031347 GO:0031348 GO:0031976 GO:0031977 GO:0031984 GO:0032101 GO:0032102 GO:0032386 GO:0032387 GO:0032501 GO:0032502 GO:0032504 GO:0032642 GO:0032682 GO:0032879 GO:0032880 GO:0032934 GO:0032991 GO:0033157 GO:0033554 GO:0033993 GO:0034357 GO:0034442 GO:0034443 GO:0036094 GO:0036477 GO:0040007 GO:0040012 GO:0040013 GO:0042060 GO:0042127 GO:0042221 GO:0042246 GO:0042306 GO:0042308 GO:0042493 GO:0042651 GO:0042995 GO:0043005 GO:0043025 GO:0043178 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044087 GO:0044238 GO:0044281 GO:0044297 GO:0044421 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044445 GO:0044446 GO:0044463 GO:0044464 GO:0045833 GO:0045922 GO:0046320 GO:0046322 GO:0046822 GO:0046823 GO:0048316 GO:0048468 GO:0048471 GO:0048513 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0048608 GO:0048609 GO:0048660 GO:0048662 GO:0048666 GO:0048678 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050727 GO:0050728 GO:0050746 GO:0050748 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051223 GO:0051224 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051270 GO:0051271 GO:0051716 GO:0051893 GO:0051895 GO:0055035 GO:0060255 GO:0060322 GO:0060341 GO:0060587 GO:0060588 GO:0061458 GO:0061564 GO:0062012 GO:0062014 GO:0065007 GO:0070201 GO:0071637 GO:0071638 GO:0071695 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090087 GO:0090109 GO:0090317 GO:0097159 GO:0097305 GO:0097447 GO:0097458 GO:0120025 GO:0120036 GO:0120038 GO:1900015 GO:1900016 GO:1900180 GO:1900181 GO:1901562 GO:1901700 GO:1901888 GO:1901889 GO:1903391 GO:1903392 GO:1903827 GO:1903828 GO:1904589 GO:1904590 GO:1904950 GO:1990904 GO:2000097 GO:2000098 GO:2000145 GO:2000146 GO:2000401 GO:2000402 GO:2000404 GO:2000405
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipocalin_2

Protein Analysis

309

Amino Acids

35.2

Weight (kDa)

5.31

Isoelectric Point (pI)

31.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipocalin_2 PF08212 92 - 252 1.6e-09 Lipocalin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 90
AccB1I GGYRCC 1 cut(s) 90
AccB7I CCANNNNNTGG 1 cut(s) 674
AccIII TCCGGA 1 cut(s) 806
AclI AACGTT 1 cut(s) 459
AcoI YGGCCR 1 cut(s) 711
AcsI RAATTY 2 cut(s) 683, 818
AcuI CTGAAG 2 cut(s) 450, 920
AfaI GTAC 3 cut(s) 38, 92, 698
AfiI CCNNNNNNNGG 1 cut(s) 674
AgsI TTSAA 6 cut(s) 13, 146, 464, 853, 866, 925
AhlI ACTAGT 1 cut(s) 881
AjnI CCWGG 3 cut(s) 357, 396, 673
AloI GAACNNNNNNTCC 2 cut(s) 655, 687
AluBI AGCT 6 cut(s) 83, 163, 224, 788, 907, 916
AluI AGCT 6 cut(s) 83, 163, 224, 788, 907, 916
Alw26I GTCTC 1 cut(s) 429
Aor13HI TCCGGA 1 cut(s) 806
AoxI GGCC 2 cut(s) 390, 711
ApeKI GCWGC 2 cut(s) 173, 788
ApoI RAATTY 2 cut(s) 683, 818
Asp700I GAANNNNTTC 1 cut(s) 536
Asp718I GGTACC 1 cut(s) 90
AspLEI GCGC 1 cut(s) 858
AspS9I GGNCC 2 cut(s) 390, 677
AsuNHI GCTAGC 1 cut(s) 784
AvaII GGWCC 1 cut(s) 677
BalI TGGCCA 1 cut(s) 713
BanI GGYRCC 1 cut(s) 90
BarI GAAGNNNNNNTAC 2 cut(s) 46, 78
BbsI GAAGAC 2 cut(s) 188, 348
BbvI GCAGC 2 cut(s) 160, 775
BccI CCATC 1 cut(s) 401
BceAI ACGGC 1 cut(s) 562
BciT130I CCWGG 3 cut(s) 359, 398, 675
BclI TGATCA 1 cut(s) 522
BcoDI GTCTC 1 cut(s) 429
BcuI ACTAGT 1 cut(s) 881
BfaI CTAG 5 cut(s) 84, 506, 785, 845, 882
BfoI RGCGCY 1 cut(s) 859
BglII AGATCT 2 cut(s) 502, 651
BisI GCNGC 2 cut(s) 174, 789
BlsI GCNGC 2 cut(s) 175, 790
Bme1390I CCNGG 3 cut(s) 359, 398, 675
Bme18I GGWCC 1 cut(s) 677
BmgT120I GGNCC 2 cut(s) 390, 677
BmiI GGNNCC 1 cut(s) 92
BmrFI CCNGG 3 cut(s) 359, 398, 675
BmsI GCATC 2 cut(s) 87, 137
BmtI GCTAGC 1 cut(s) 788
BpiI GAAGAC 2 cut(s) 188, 348
BpmI CTGGAG 1 cut(s) 643
BsaI GGTCTC 1 cut(s) 429
BsaJI CCNNGG 2 cut(s) 357, 358
BsaWI WCCGGW 1 cut(s) 806
BsaXI ACNNNNNCTCC 2 cut(s) 655, 685
Bsc4I CCNNNNNNNGG 1 cut(s) 674
Bse1I ACTGG 1 cut(s) 448
Bse3DI GCAATG 4 cut(s) 72, 349, 554, 798
BseAI TCCGGA 1 cut(s) 806
BseBI CCWGG 3 cut(s) 359, 398, 675
BseDI CCNNGG 2 cut(s) 357, 358
BseGI GGATG 1 cut(s) 393
BseLI CCNNNNNNNGG 1 cut(s) 674
BseMI GCAATG 4 cut(s) 72, 349, 554, 798
BseMII CTCAG 2 cut(s) 168, 216
BseNI ACTGG 1 cut(s) 448
BseXI GCAGC 2 cut(s) 160, 775
BseYI CCCAGC 1 cut(s) 326
BshFI GGCC 2 cut(s) 392, 713
BshNI GGYRCC 1 cut(s) 90
BsiSI CCGG 1 cut(s) 807
BslI CCNNNNNNNGG 1 cut(s) 674
BsmAI GTCTC 1 cut(s) 429
BsmI GAATGC 1 cut(s) 816
BsnI GGCC 2 cut(s) 392, 713
Bso31I GGTCTC 1 cut(s) 429
Bsp13I TCCGGA 1 cut(s) 806
Bsp143I GATC 5 cut(s) 502, 522, 588, 651, 841
BspANI GGCC 2 cut(s) 392, 713
BspCNI CTCAG 2 cut(s) 169, 217
BspEI TCCGGA 1 cut(s) 806
BspLI GGNNCC 1 cut(s) 92
BspOI GCTAGC 1 cut(s) 788
BspT107I GGYRCC 1 cut(s) 90
BspTNI GGTCTC 1 cut(s) 429
BsrDI GCAATG 4 cut(s) 72, 349, 554, 798
BsrI ACTGG 1 cut(s) 448
BssECI CCNNGG 2 cut(s) 357, 358
BssMI GATC 5 cut(s) 502, 522, 588, 651, 841
Bst2UI CCWGG 3 cut(s) 359, 398, 675
Bst4CI ACNGT 5 cut(s) 41, 187, 347, 761, 779
Bst6I CTCTTC 2 cut(s) 198, 380
BstAPI GCANNNNNTGC 1 cut(s) 173
BstC8I GCNNGC 3 cut(s) 120, 165, 786
BstDEI CTNAG 3 cut(s) 177, 225, 570
BstF5I GGATG 1 cut(s) 393
BstH2I RGCGCY 1 cut(s) 859
BstHHI GCGC 1 cut(s) 858
BstKTI GATC 5 cut(s) 505, 525, 591, 654, 844
BstMAI GTCTC 1 cut(s) 429
BstMBI GATC 5 cut(s) 502, 522, 588, 651, 841
BstMWI GCNNNNNNNGC 2 cut(s) 173, 913
BstNI CCWGG 3 cut(s) 359, 398, 675
BstSCI CCNGG 3 cut(s) 357, 396, 673
BstV1I GCAGC 2 cut(s) 160, 775
BstV2I GAAGAC 2 cut(s) 188, 348
BstX2I RGATCY 2 cut(s) 502, 651
BstYI RGATCY 2 cut(s) 502, 651
BsuRI GGCC 2 cut(s) 392, 713
BtsCI GGATG 1 cut(s) 393
BtsIMutI CAGTG 1 cut(s) 192
Cac8I GCNNGC 3 cut(s) 120, 165, 786
CfoI GCGC 1 cut(s) 858
Cfr13I GGNCC 2 cut(s) 390, 677
Csp6I GTAC 3 cut(s) 37, 91, 697
CviAII CATG 2 cut(s) 250, 419
CviQI GTAC 3 cut(s) 37, 91, 697
DdeI CTNAG 3 cut(s) 177, 225, 570
DpnI GATC 5 cut(s) 504, 524, 590, 653, 843
DpnII GATC 5 cut(s) 502, 522, 588, 651, 841
EaeI YGGCCR 1 cut(s) 711
Eam1104I CTCTTC 2 cut(s) 198, 380
EarI CTCTTC 2 cut(s) 198, 380
Eco31I GGTCTC 1 cut(s) 429
Eco47I GGWCC 1 cut(s) 677
Eco57I CTGAAG 2 cut(s) 450, 920
EcoRI GAATTC 1 cut(s) 683
EcoRII CCWGG 3 cut(s) 357, 396, 673
FaeI CATG 2 cut(s) 253, 422
FalI AAGNNNNNCTT 2 cut(s) 139, 171
FatI CATG 2 cut(s) 249, 418
FbaI TGATCA 1 cut(s) 522
Fnu4HI GCNGC 2 cut(s) 174, 789
FokI GGATG 1 cut(s) 380
Fsp4HI GCNGC 2 cut(s) 174, 789
FspBI CTAG 5 cut(s) 84, 506, 785, 845, 882
GlaI GCGC 1 cut(s) 857
GluI GCNGC 2 cut(s) 174, 789
GsaI CCCAGC 1 cut(s) 330
GsuI CTGGAG 1 cut(s) 643
HaeII RGCGCY 1 cut(s) 859
HaeIII GGCC 2 cut(s) 392, 713
HapII CCGG 1 cut(s) 807
HhaI GCGC 1 cut(s) 858
Hin1II CATG 2 cut(s) 253, 422
Hin6I GCGC 1 cut(s) 856
HinP1I GCGC 1 cut(s) 856
HindIII AAGCTT 1 cut(s) 905
HinfI GANTC 3 cut(s) 30, 190, 497
HpaII CCGG 1 cut(s) 807
Hpy166II GTNNAC 2 cut(s) 22, 139
Hpy188I TCNGA 6 cut(s) 133, 214, 475, 502, 775, 900
Hpy8I GTNNAC 2 cut(s) 22, 139
HpyAV CCTTC 4 cut(s) 212, 418, 425, 886
HpyCH4III ACNGT 5 cut(s) 41, 187, 347, 761, 779
HpyCH4IV ACGT 2 cut(s) 316, 459
HpyCH4V TGCA 7 cut(s) 77, 128, 167, 354, 514, 791, 814
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 913
HpyF3I CTNAG 3 cut(s) 177, 225, 570
HpySE526I ACGT 2 cut(s) 316, 459
Hsp92II CATG 2 cut(s) 253, 422
HspAI GCGC 1 cut(s) 856
Kpn2I TCCGGA 1 cut(s) 806
KpnI GGTACC 1 cut(s) 94
Ksp22I TGATCA 1 cut(s) 522
Kzo9I GATC 5 cut(s) 502, 522, 588, 651, 841
LmnI GCTCC 3 cut(s) 80, 221, 626
Lsp1109I GCAGC 2 cut(s) 160, 775
LweI GCATC 2 cut(s) 87, 137
MaeI CTAG 5 cut(s) 84, 506, 785, 845, 882
MaeII ACGT 2 cut(s) 316, 459
MaeIII GTNAC 1 cut(s) 187
MalI GATC 5 cut(s) 504, 524, 590, 653, 843
MboI GATC 5 cut(s) 502, 522, 588, 651, 841
MboII GAAGA 6 cut(s) 66, 185, 193, 353, 397, 913
MflI RGATCY 2 cut(s) 502, 651
MlsI TGGCCA 1 cut(s) 713
MluCI AATT 7 cut(s) 14, 262, 607, 683, 818, 848, 866
MluNI TGGCCA 1 cut(s) 713
MlyI GAGTC 2 cut(s) 184, 506
MmeI TCCRAC 2 cut(s) 575, 753
MnlI CCTC 6 cut(s) 80, 207, 222, 239, 381, 551
Mox20I TGGCCA 1 cut(s) 713
MroI TCCGGA 1 cut(s) 806
MroXI GAANNNNTTC 1 cut(s) 536
MscI TGGCCA 1 cut(s) 713
MseI TTAA 2 cut(s) 312, 824
Msp20I TGGCCA 1 cut(s) 713
MspI CCGG 1 cut(s) 807
MspR9I CCNGG 3 cut(s) 359, 398, 675
Mva1269I GAATGC 1 cut(s) 816
MvaI CCWGG 3 cut(s) 359, 398, 675
MwoI GCNNNNNNNGC 2 cut(s) 173, 913
NdeII GATC 5 cut(s) 502, 522, 588, 651, 841
NheI GCTAGC 1 cut(s) 784
NlaIII CATG 2 cut(s) 253, 422
NlaIV GGNNCC 1 cut(s) 92
NmuCI GTSAC 1 cut(s) 187
PasI CCCWGGG 1 cut(s) 358
PctI GAATGC 1 cut(s) 816
PdmI GAANNNNTTC 1 cut(s) 536
PfeI GAWTC 1 cut(s) 30
PflMI CCANNNNNTGG 1 cut(s) 674
PkrI GCNGC 2 cut(s) 175, 790
PleI GAGTC 2 cut(s) 184, 505
PpsI GAGTC 2 cut(s) 184, 505
Psp1406I AACGTT 1 cut(s) 459
Psp6I CCWGG 3 cut(s) 357, 396, 673
PspFI CCCAGC 1 cut(s) 326
PspGI CCWGG 3 cut(s) 357, 396, 673
PspN4I GGNNCC 1 cut(s) 92
PspPI GGNCC 2 cut(s) 390, 677
PsuI RGATCY 2 cut(s) 502, 651
RsaI GTAC 3 cut(s) 38, 92, 698
RsaNI GTAC 3 cut(s) 37, 91, 697
SaqAI TTAA 2 cut(s) 312, 824
SatI GCNGC 2 cut(s) 174, 789
Sau3AI GATC 5 cut(s) 502, 522, 588, 651, 841
Sau96I GGNCC 2 cut(s) 390, 677
SchI GAGTC 2 cut(s) 184, 506
ScrFI CCNGG 3 cut(s) 359, 398, 675
SfaNI GCATC 2 cut(s) 87, 137
SinI GGWCC 1 cut(s) 677
SpeI ACTAGT 1 cut(s) 881
Sse9I AATT 7 cut(s) 14, 262, 607, 683, 818, 848, 866
SspMI CTAG 5 cut(s) 84, 506, 785, 845, 882
StyD4I CCNGG 3 cut(s) 357, 396, 673
TaaI ACNGT 5 cut(s) 41, 187, 347, 761, 779
TaiI ACGT 2 cut(s) 319, 462
TaqI TCGA 1 cut(s) 870
TasI AATT 7 cut(s) 14, 262, 607, 683, 818, 848, 866
TatI WGTACW 1 cut(s) 696
TfiI GAWTC 1 cut(s) 30
Tru1I TTAA 2 cut(s) 312, 824
Tru9I TTAA 2 cut(s) 312, 824
TscAI CASTG 1 cut(s) 192
TseFI GTSAC 1 cut(s) 187
TseI GCWGC 2 cut(s) 173, 788
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 5 cut(s) 231, 312, 407, 634, 676
TspGWI ACGGA 1 cut(s) 533
TspRI CASTG 1 cut(s) 192
Van91I CCANNNNNTGG 1 cut(s) 674
VpaK11BI GGWCC 1 cut(s) 677
XapI RAATTY 2 cut(s) 683, 818
XbaI TCTAGA 2 cut(s) 505, 844
XmnI GAANNNNTTC 1 cut(s) 536
XspI CTAG 5 cut(s) 84, 506, 785, 845, 882
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.