Rw5G023920
ERF Family

Belongs to the calycin superfamily. Lipocalin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0009620
Physical Location & Seq
Forward (+)
33897149 .. 33900167
3019 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G023920.1

Sequence Viewer

Length: 936 bp
ATGGTTCATGCTCTTTTACAAACAGCACCACTTCTCCTCCAGTGTTCTCCTCATGTCTCTTCCTGTAGGGGAAAGCCTGGGAAAATAGTGAAGTGCTGTGCAGAGCAATCTATGAGCAACAAGCCAGTGACCAAACATGTATTATCTGGGTTTGCGGCATCTTTAGTACTTCTCTCTCAAATAAACCAGGAGCTGAGAGGCGCTATGATGATGATGAGAGGCATGACAGCAAACAATTTTGACCCCATTAGATATTCTGGTAGGTGGTATGAAGTTGCTTCACTTAACCGTGGATTTGCTGGGCAAGGTCGGACGAAGACAAGGTCAGGAAGACTGTCATTGCACCCAGGTAAATGGAAATGGTATGGTGTATATACCTTTGATATTGAGAAGAGGGCCATCCAGGTTGATACCTTCTGTGTTCATGGGTCTCCTGAAGGTTATATAACTGGCATAAGGGGAAACGTTCAATGCCTTTCAGATAAAGATTTGGAAAAGAATGAGTCAGATCTAGAAATGCAGGAGATGATCAAAGAGAAGTGTTTCCTCCGTTTTCCAACATTGCCATTTATCCCTAAGTTGCCGTATGATGTGATCGCAACTGATTATGACAATTTTGCTCTTGTTTCAGGAGCAAAAGATACAGGTTTCATACAGATCTACTCCAGGACACCAACTCCTGGTCCTGAATTCATAGAGAAGTACAAATCTTACTTGGCCAACTTTGGATATGACCCAACCAAAATCAAGGACACCCCACAAGACTGTGAAGTGATGTCGGACAGTCGGCTATCTGCAATGATGTCAATGTCCGGAATGCAAAAAATTTTAACAAATGAGTTTCCTGATCTAGAATTGAAGCGCCCTGTTCAATTCGACCCCTTTACTAGTGTATTTGACACTCTGAAGAAGCTTGTTCAGCTTTATTTCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000302 GO:0001101 GO:0001817 GO:0001818 GO:0001952 GO:0001953 GO:0002682 GO:0002683 GO:0002685 GO:0002686 GO:0003006 GO:0003674 GO:0005488 GO:0005496 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0005975 GO:0005996 GO:0006006 GO:0006629 GO:0006950 GO:0006979 GO:0007162 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0007568 GO:0008150 GO:0008152 GO:0008285 GO:0008289 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009611 GO:0009628 GO:0009635 GO:0009636 GO:0009642 GO:0009644 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009888 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010117 GO:0010154 GO:0010431 GO:0010565 GO:0010605 GO:0010640 GO:0010642 GO:0010646 GO:0010648 GO:0010810 GO:0010812 GO:0012505 GO:0014012 GO:0015485 GO:0016020 GO:0016043 GO:0019216 GO:0019217 GO:0019222 GO:0019318 GO:0021700 GO:0022008 GO:0022414 GO:0022626 GO:0023051 GO:0023057 GO:0030030 GO:0030154 GO:0030155 GO:0030182 GO:0030334 GO:0030336 GO:0030425 GO:0031099 GO:0031102 GO:0031103 GO:0031175 GO:0031323 GO:0031324 GO:0031347 GO:0031348 GO:0031976 GO:0031977 GO:0031984 GO:0032101 GO:0032102 GO:0032386 GO:0032387 GO:0032501 GO:0032502 GO:0032504 GO:0032642 GO:0032682 GO:0032879 GO:0032880 GO:0032934 GO:0032991 GO:0033157 GO:0033554 GO:0033993 GO:0034357 GO:0034442 GO:0034443 GO:0036094 GO:0036477 GO:0040007 GO:0040012 GO:0040013 GO:0042060 GO:0042127 GO:0042221 GO:0042246 GO:0042306 GO:0042308 GO:0042493 GO:0042651 GO:0042995 GO:0043005 GO:0043025 GO:0043178 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044087 GO:0044238 GO:0044281 GO:0044297 GO:0044421 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044445 GO:0044446 GO:0044463 GO:0044464 GO:0045833 GO:0045922 GO:0046320 GO:0046322 GO:0046822 GO:0046823 GO:0048316 GO:0048468 GO:0048471 GO:0048513 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0048608 GO:0048609 GO:0048660 GO:0048662 GO:0048666 GO:0048678 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050727 GO:0050728 GO:0050746 GO:0050748 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051223 GO:0051224 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051270 GO:0051271 GO:0051716 GO:0051893 GO:0051895 GO:0055035 GO:0060255 GO:0060322 GO:0060341 GO:0060587 GO:0060588 GO:0061458 GO:0061564 GO:0062012 GO:0062014 GO:0065007 GO:0070201 GO:0071637 GO:0071638 GO:0071695 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090087 GO:0090109 GO:0090317 GO:0097159 GO:0097305 GO:0097447 GO:0097458 GO:0120025 GO:0120036 GO:0120038 GO:1900015 GO:1900016 GO:1900180 GO:1900181 GO:1901562 GO:1901700 GO:1901888 GO:1901889 GO:1903391 GO:1903392 GO:1903827 GO:1903828 GO:1904589 GO:1904590 GO:1904950 GO:1990904 GO:2000097 GO:2000098 GO:2000145 GO:2000146 GO:2000401 GO:2000402 GO:2000404 GO:2000405
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipocalin_2

Protein Analysis

311

Amino Acids

35.2

Weight (kDa)

8.88

Isoelectric Point (pI)

35.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 680
AccIII TCCGGA 1 cut(s) 812
AciI CCGC 1 cut(s) 155
AclI AACGTT 1 cut(s) 465
AcoI YGGCCR 1 cut(s) 717
AcsI RAATTY 2 cut(s) 689, 825
AcuI CTGAAG 2 cut(s) 456, 926
AfaI GTAC 2 cut(s) 168, 704
AfiI CCNNNNNNNGG 1 cut(s) 680
AflIII ACRYGT 1 cut(s) 136
AgsI TTSAA 4 cut(s) 470, 859, 872, 931
AhlI ACTAGT 1 cut(s) 887
AjnI CCWGG 6 cut(s) 76, 186, 346, 402, 665, 679
AluBI AGCT 3 cut(s) 193, 913, 922
AluI AGCT 3 cut(s) 193, 913, 922
Alw26I GTCTC 2 cut(s) 61, 435
AlwNI CAGNNNCTG 1 cut(s) 193
Aor13HI TCCGGA 1 cut(s) 812
AoxI GGCC 2 cut(s) 396, 717
ApoI RAATTY 2 cut(s) 689, 825
ArsI GACNNNNNNTTYG 2 cut(s) 308, 340
Asp700I GAANNNNTTC 1 cut(s) 542
AspLEI GCGC 2 cut(s) 203, 864
AspS9I GGNCC 2 cut(s) 396, 683
AvaII GGWCC 1 cut(s) 683
BalI TGGCCA 1 cut(s) 719
BbsI GAAGAC 2 cut(s) 323, 337
BccI CCATC 1 cut(s) 407
BceAI ACGGC 1 cut(s) 568
BciT130I CCWGG 6 cut(s) 78, 188, 348, 404, 667, 681
BclI TGATCA 1 cut(s) 528
BcoDI GTCTC 2 cut(s) 61, 435
BcuI ACTAGT 1 cut(s) 887
BfaI CTAG 3 cut(s) 512, 851, 888
BfmI CTRYAG 1 cut(s) 64
BfoI RGCGCY 2 cut(s) 204, 865
BglII AGATCT 2 cut(s) 508, 657
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
BmcAI AGTACT 1 cut(s) 168
Bme1390I CCNGG 6 cut(s) 78, 188, 348, 404, 667, 681
Bme18I GGWCC 1 cut(s) 683
BmgT120I GGNCC 2 cut(s) 396, 683
BmrFI CCNGG 6 cut(s) 78, 188, 348, 404, 667, 681
BmsI GCATC 1 cut(s) 167
BpiI GAAGAC 2 cut(s) 323, 337
BpmI CTGGAG 2 cut(s) 23, 649
BsaI GGTCTC 1 cut(s) 435
BsaJI CCNNGG 3 cut(s) 77, 289, 346
BsaWI WCCGGW 1 cut(s) 812
BsaXI ACNNNNNCTCC 6 cut(s) 18, 21, 48, 51, 661, 691
Bsc4I CCNNNNNNNGG 1 cut(s) 680
Bse1I ACTGG 3 cut(s) 40, 125, 454
Bse3DI GCAATG 3 cut(s) 338, 560, 804
BseAI TCCGGA 1 cut(s) 812
BseBI CCWGG 6 cut(s) 78, 188, 348, 404, 667, 681
BseDI CCNNGG 3 cut(s) 77, 289, 346
BseGI GGATG 1 cut(s) 399
BseLI CCNNNNNNNGG 1 cut(s) 680
BseMI GCAATG 3 cut(s) 338, 560, 804
BseMII CTCAG 1 cut(s) 185
BseNI ACTGG 3 cut(s) 40, 125, 454
BseRI GAGGAG 2 cut(s) 26, 39
BseYI CCCAGC 1 cut(s) 299
BsgI GTGCAG 1 cut(s) 120
BshFI GGCC 2 cut(s) 398, 719
BsiSI CCGG 1 cut(s) 813
BslI CCNNNNNNNGG 1 cut(s) 680
BsmAI GTCTC 2 cut(s) 61, 435
BsmI GAATGC 1 cut(s) 822
BsnI GGCC 2 cut(s) 398, 719
Bso31I GGTCTC 1 cut(s) 435
Bsp13I TCCGGA 1 cut(s) 812
Bsp143I GATC 5 cut(s) 508, 528, 594, 657, 847
BspACI CCGC 1 cut(s) 155
BspANI GGCC 2 cut(s) 398, 719
BspCNI CTCAG 1 cut(s) 186
BspEI TCCGGA 1 cut(s) 812
BspTNI GGTCTC 1 cut(s) 435
BsrDI GCAATG 3 cut(s) 338, 560, 804
BsrI ACTGG 3 cut(s) 40, 125, 454
BssECI CCNNGG 3 cut(s) 77, 289, 346
BssMI GATC 5 cut(s) 508, 528, 594, 657, 847
Bst2UI CCWGG 6 cut(s) 78, 188, 348, 404, 667, 681
Bst4CI ACNGT 4 cut(s) 290, 336, 767, 785
Bst6I CTCTTC 2 cut(s) 64, 386
BstDEI CTNAG 2 cut(s) 194, 576
BstDSI CCRYGG 1 cut(s) 289
BstF5I GGATG 1 cut(s) 399
BstH2I RGCGCY 2 cut(s) 204, 865
BstHHI GCGC 2 cut(s) 203, 864
BstKTI GATC 5 cut(s) 511, 531, 597, 660, 850
BstMAI GTCTC 2 cut(s) 61, 435
BstMBI GATC 5 cut(s) 508, 528, 594, 657, 847
BstMWI GCNNNNNNNGC 1 cut(s) 919
BstNI CCWGG 6 cut(s) 78, 188, 348, 404, 667, 681
BstNSI RCATGY 1 cut(s) 140
BstSCI CCNGG 6 cut(s) 76, 186, 346, 402, 665, 679
BstSFI CTRYAG 1 cut(s) 64
BstV2I GAAGAC 2 cut(s) 323, 337
BstX2I RGATCY 2 cut(s) 508, 657
BstXI CCANNNNNNTGG 1 cut(s) 354
BstYI RGATCY 2 cut(s) 508, 657
BsuRI GGCC 2 cut(s) 398, 719
BtgI CCRYGG 1 cut(s) 289
BtsCI GGATG 1 cut(s) 399
BtsIMutI CAGTG 2 cut(s) 47, 132
CaiI CAGNNNCTG 1 cut(s) 193
CfoI GCGC 2 cut(s) 203, 864
Cfr13I GGNCC 2 cut(s) 396, 683
Csp6I GTAC 2 cut(s) 167, 703
CviAII CATG 5 cut(s) 8, 53, 137, 223, 425
CviJI RGCY 8 cut(s) 76, 124, 193, 398, 719, 790, 913, 922
CviKI_1 RGCY 8 cut(s) 76, 124, 193, 398, 719, 790, 913, 922
CviQI GTAC 2 cut(s) 167, 703
DdeI CTNAG 2 cut(s) 194, 576
DpnI GATC 5 cut(s) 510, 530, 596, 659, 849
DpnII GATC 5 cut(s) 508, 528, 594, 657, 847
EaeI YGGCCR 1 cut(s) 717
Eam1104I CTCTTC 2 cut(s) 64, 386
EarI CTCTTC 2 cut(s) 64, 386
Eco31I GGTCTC 1 cut(s) 435
Eco47I GGWCC 1 cut(s) 683
Eco57I CTGAAG 2 cut(s) 456, 926
EcoRI GAATTC 1 cut(s) 689
EcoRII CCWGG 6 cut(s) 76, 186, 346, 402, 665, 679
FaeI CATG 5 cut(s) 11, 56, 140, 226, 428
FatI CATG 5 cut(s) 7, 52, 136, 222, 424
FbaI TGATCA 1 cut(s) 528
Fnu4HI GCNGC 1 cut(s) 156
FokI GGATG 1 cut(s) 386
Fsp4HI GCNGC 1 cut(s) 156
FspBI CTAG 3 cut(s) 512, 851, 888
GlaI GCGC 2 cut(s) 202, 863
GluI GCNGC 1 cut(s) 156
GsaI CCCAGC 1 cut(s) 303
GsuI CTGGAG 2 cut(s) 23, 649
HaeII RGCGCY 2 cut(s) 204, 865
HaeIII GGCC 2 cut(s) 398, 719
HapII CCGG 1 cut(s) 813
HhaI GCGC 2 cut(s) 203, 864
Hin1II CATG 5 cut(s) 11, 56, 140, 226, 428
Hin6I GCGC 2 cut(s) 201, 862
HinP1I GCGC 2 cut(s) 201, 862
HindIII AAGCTT 1 cut(s) 911
HinfI GANTC 1 cut(s) 503
HpaII CCGG 1 cut(s) 813
Hpy188I TCNGA 5 cut(s) 312, 481, 508, 781, 906
Hpy188III TCNNGA 8 cut(s) 327, 434, 512, 630, 686, 813, 845, 851
HpyAV CCTTC 2 cut(s) 424, 431
HpyCH4III ACNGT 4 cut(s) 290, 336, 767, 785
HpyCH4IV ACGT 1 cut(s) 465
HpyCH4V TGCA 5 cut(s) 101, 343, 520, 797, 820
HpyF10VI GCNNNNNNNGC 1 cut(s) 919
HpyF3I CTNAG 2 cut(s) 194, 576
HpySE526I ACGT 1 cut(s) 465
Hsp92II CATG 5 cut(s) 11, 56, 140, 226, 428
HspAI GCGC 2 cut(s) 201, 862
Kpn2I TCCGGA 1 cut(s) 812
Ksp22I TGATCA 1 cut(s) 528
Kzo9I GATC 5 cut(s) 508, 528, 594, 657, 847
LmnI GCTCC 2 cut(s) 190, 632
LweI GCATC 1 cut(s) 167
MaeI CTAG 3 cut(s) 512, 851, 888
MaeII ACGT 1 cut(s) 465
MaeIII GTNAC 1 cut(s) 127
MalI GATC 5 cut(s) 510, 530, 596, 659, 849
MboI GATC 5 cut(s) 508, 528, 594, 657, 847
MboII GAAGA 5 cut(s) 51, 328, 342, 403, 919
MflI RGATCY 2 cut(s) 508, 657
MlsI TGGCCA 1 cut(s) 719
MluCI AATT 6 cut(s) 235, 613, 689, 825, 854, 872
MluNI TGGCCA 1 cut(s) 719
MlyI GAGTC 1 cut(s) 512
MmeI TCCRAC 3 cut(s) 290, 581, 759
MnlI CCTC 6 cut(s) 47, 60, 191, 212, 387, 557
Mox20I TGGCCA 1 cut(s) 719
MroI TCCGGA 1 cut(s) 812
MroXI GAANNNNTTC 1 cut(s) 542
MscI TGGCCA 1 cut(s) 719
MseI TTAA 2 cut(s) 285, 830
Msp20I TGGCCA 1 cut(s) 719
MspI CCGG 1 cut(s) 813
MspR9I CCNGG 6 cut(s) 78, 188, 348, 404, 667, 681
Mva1269I GAATGC 1 cut(s) 822
MvaI CCWGG 6 cut(s) 78, 188, 348, 404, 667, 681
MwoI GCNNNNNNNGC 1 cut(s) 919
NdeII GATC 5 cut(s) 508, 528, 594, 657, 847
NlaIII CATG 5 cut(s) 11, 56, 140, 226, 428
NmuCI GTSAC 1 cut(s) 127
NspI RCATGY 1 cut(s) 140
PciI ACATGT 1 cut(s) 136
PctI GAATGC 1 cut(s) 822
PdmI GAANNNNTTC 1 cut(s) 542
PflFI GACNNNGTC 1 cut(s) 322
PflMI CCANNNNNTGG 1 cut(s) 680
PfoI TCCNGGA 1 cut(s) 665
PkrI GCNGC 1 cut(s) 157
PleI GAGTC 1 cut(s) 511
PpsI GAGTC 1 cut(s) 511
PscI ACATGT 1 cut(s) 136
Psp1406I AACGTT 1 cut(s) 465
Psp6I CCWGG 6 cut(s) 76, 186, 346, 402, 665, 679
PspFI CCCAGC 1 cut(s) 299
PspGI CCWGG 6 cut(s) 76, 186, 346, 402, 665, 679
PspPI GGNCC 2 cut(s) 396, 683
PstNI CAGNNNCTG 1 cut(s) 193
PsuI RGATCY 2 cut(s) 508, 657
PsyI GACNNNGTC 1 cut(s) 322
RsaI GTAC 2 cut(s) 168, 704
RsaNI GTAC 2 cut(s) 167, 703
SaqAI TTAA 2 cut(s) 285, 830
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 5 cut(s) 508, 528, 594, 657, 847
Sau96I GGNCC 2 cut(s) 396, 683
ScaI AGTACT 1 cut(s) 168
SchI GAGTC 1 cut(s) 512
ScrFI CCNGG 6 cut(s) 78, 188, 348, 404, 667, 681
SfaNI GCATC 1 cut(s) 167
SfcI CTRYAG 1 cut(s) 64
SinI GGWCC 1 cut(s) 683
SpeI ACTAGT 1 cut(s) 887
Sse9I AATT 6 cut(s) 235, 613, 689, 825, 854, 872
SsiI CCGC 1 cut(s) 155
SspMI CTAG 3 cut(s) 512, 851, 888
StyD4I CCNGG 6 cut(s) 76, 186, 346, 402, 665, 679
TaaI ACNGT 4 cut(s) 290, 336, 767, 785
TaiI ACGT 1 cut(s) 468
TaqI TCGA 1 cut(s) 876
TasI AATT 6 cut(s) 235, 613, 689, 825, 854, 872
TatI WGTACW 2 cut(s) 166, 702
TauI GCSGC 1 cut(s) 158
Tru1I TTAA 2 cut(s) 285, 830
Tru9I TTAA 2 cut(s) 285, 830
TscAI CASTG 2 cut(s) 47, 132
TseFI GTSAC 1 cut(s) 127
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 4 cut(s) 285, 413, 640, 682
TspGWI ACGGA 1 cut(s) 539
TspRI CASTG 2 cut(s) 47, 132
Tth111I GACNNNGTC 1 cut(s) 322
Van91I CCANNNNNTGG 1 cut(s) 680
VpaK11BI GGWCC 1 cut(s) 683
XapI RAATTY 2 cut(s) 689, 825
XbaI TCTAGA 2 cut(s) 511, 850
XceI RCATGY 1 cut(s) 140
XmnI GAANNNNTTC 1 cut(s) 542
XspI CTAG 3 cut(s) 512, 851, 888
ZrmI AGTACT 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.