Rmu_sc0008278.1_g000006
ERF Family

Belongs to the calycin superfamily. Lipocalin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008278.1
OG0009620
Physical Location & Seq
Reverse (-)
19740 .. 22741
3002 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008278.1_g000006.1.cds

Sequence Viewer

Length: 999 bp
atggttcatgctcttttacaaacagcaccacttctcctccagtgttctcctcatgtctcttcctgtaggggaaagcctgggaaaatagtgaagtgctgtgcagagcaatctatgagcaacaagccagtgaccaaacatgtattatctgggtttgcggcatctttagtacttctctctcaaataaaccaggctgttgcatcagaagtttactttcaaagaaatacttatgagcttgcaaatgctgctgagaagacagtgactcttcctcttgataagggttctgatgaaggagctgagaggctaatgatgatgagaggcatgacagcaaacaattttgaccccattagatattctggtaggtggtatgaagttgcttcacttaaacgtggatttgctgggcaaggtcaggaagactgtcattgcacccagggtgtatatacctttgatattgagaagagggccatccaggttgataccttctgtgttcatgggtctcctgaaggttatataactggcataaggggaaacgttcaatgcctttcagataaagatttggaaaagaatgagtcagatctagaaatgcaggagatgatcaaagagaagtgtttcctccgttttccaacattgccatttatccccaagttgccgtatgatgtgattgcaactgattatgacaattttgctcttgtttcaggagcaaaagatacaggtttcatacagatctactccaggacaccaactcctggtcctgaattcatagagaagtacaaatcatacttggccaactttggatatgacccaaccaaaatcaaggacaccccacaagactgtgaagtgatgtcggacagtcggctatctgcaatgatgtcaatgtccggaatgcaaaaatttttaacaaatgagtttcctgatctagaattgaagcgccctgttcaattcgaccccttcactagtgtatttgacactctgaagaagcttgttcagctttatttcaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000302 GO:0001101 GO:0001817 GO:0001818 GO:0001952 GO:0001953 GO:0002682 GO:0002683 GO:0002685 GO:0002686 GO:0003006 GO:0003674 GO:0005488 GO:0005496 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0005975 GO:0005996 GO:0006006 GO:0006629 GO:0006950 GO:0006979 GO:0007162 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0007568 GO:0008150 GO:0008152 GO:0008285 GO:0008289 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009611 GO:0009628 GO:0009635 GO:0009636 GO:0009642 GO:0009644 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009888 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010117 GO:0010154 GO:0010431 GO:0010565 GO:0010605 GO:0010640 GO:0010642 GO:0010646 GO:0010648 GO:0010810 GO:0010812 GO:0012505 GO:0014012 GO:0015485 GO:0016020 GO:0016043 GO:0019216 GO:0019217 GO:0019222 GO:0019318 GO:0021700 GO:0022008 GO:0022414 GO:0022626 GO:0023051 GO:0023057 GO:0030030 GO:0030154 GO:0030155 GO:0030182 GO:0030334 GO:0030336 GO:0030425 GO:0031099 GO:0031102 GO:0031103 GO:0031175 GO:0031323 GO:0031324 GO:0031347 GO:0031348 GO:0031976 GO:0031977 GO:0031984 GO:0032101 GO:0032102 GO:0032386 GO:0032387 GO:0032501 GO:0032502 GO:0032504 GO:0032642 GO:0032682 GO:0032879 GO:0032880 GO:0032934 GO:0032991 GO:0033157 GO:0033554 GO:0033993 GO:0034357 GO:0034442 GO:0034443 GO:0036094 GO:0036477 GO:0040007 GO:0040012 GO:0040013 GO:0042060 GO:0042127 GO:0042221 GO:0042246 GO:0042306 GO:0042308 GO:0042493 GO:0042651 GO:0042995 GO:0043005 GO:0043025 GO:0043178 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044087 GO:0044238 GO:0044281 GO:0044297 GO:0044421 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044445 GO:0044446 GO:0044463 GO:0044464 GO:0045833 GO:0045922 GO:0046320 GO:0046322 GO:0046822 GO:0046823 GO:0048316 GO:0048468 GO:0048471 GO:0048513 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0048608 GO:0048609 GO:0048660 GO:0048662 GO:0048666 GO:0048678 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050727 GO:0050728 GO:0050746 GO:0050748 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051223 GO:0051224 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051270 GO:0051271 GO:0051716 GO:0051893 GO:0051895 GO:0055035 GO:0060255 GO:0060322 GO:0060341 GO:0060587 GO:0060588 GO:0061458 GO:0061564 GO:0062012 GO:0062014 GO:0065007 GO:0070201 GO:0071637 GO:0071638 GO:0071695 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090087 GO:0090109 GO:0090317 GO:0097159 GO:0097305 GO:0097447 GO:0097458 GO:0120025 GO:0120036 GO:0120038 GO:1900015 GO:1900016 GO:1900180 GO:1900181 GO:1901562 GO:1901700 GO:1901888 GO:1901889 GO:1903391 GO:1903392 GO:1903827 GO:1903828 GO:1904589 GO:1904590 GO:1904950 GO:1990904 GO:2000097 GO:2000098 GO:2000145 GO:2000146 GO:2000401 GO:2000402 GO:2000404 GO:2000405
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipocalin_2

Protein Analysis

332

Amino Acids

37.34

Weight (kDa)

6.02

Isoelectric Point (pI)

35.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 743
AccIII TCCGGA 1 cut(s) 875
AciI CCGC 1 cut(s) 155
AclI AACGTT 1 cut(s) 528
AcoI YGGCCR 1 cut(s) 780
AcsI RAATTY 2 cut(s) 752, 887
AcuI CTGAAG 2 cut(s) 519, 989
AfaI GTAC 2 cut(s) 168, 767
AfiI CCNNNNNNNGG 1 cut(s) 743
AflIII ACRYGT 1 cut(s) 136
AgsI TTSAA 5 cut(s) 215, 533, 922, 935, 994
AhlI ACTAGT 1 cut(s) 950
AjnI CCWGG 6 cut(s) 76, 186, 426, 465, 728, 742
AluBI AGCT 4 cut(s) 232, 293, 976, 985
AluI AGCT 4 cut(s) 232, 293, 976, 985
Alw26I GTCTC 2 cut(s) 61, 498
Aor13HI TCCGGA 1 cut(s) 875
AoxI GGCC 2 cut(s) 459, 780
ApeKI GCWGC 1 cut(s) 242
ApoI RAATTY 2 cut(s) 752, 887
Asp700I GAANNNNTTC 1 cut(s) 605
AspLEI GCGC 1 cut(s) 927
AspS9I GGNCC 2 cut(s) 459, 746
AvaII GGWCC 1 cut(s) 746
BalI TGGCCA 1 cut(s) 782
BbsI GAAGAC 2 cut(s) 257, 417
BbvI GCAGC 1 cut(s) 229
BccI CCATC 1 cut(s) 470
BceAI ACGGC 1 cut(s) 631
BciT130I CCWGG 6 cut(s) 78, 188, 428, 467, 730, 744
BclI TGATCA 1 cut(s) 591
BcoDI GTCTC 2 cut(s) 61, 498
BcuI ACTAGT 1 cut(s) 950
BfaI CTAG 3 cut(s) 575, 914, 951
BfmI CTRYAG 1 cut(s) 64
BfoI RGCGCY 1 cut(s) 928
BglII AGATCT 2 cut(s) 571, 720
BisI GCNGC 2 cut(s) 156, 243
BlsI GCNGC 2 cut(s) 157, 244
BmcAI AGTACT 1 cut(s) 168
Bme1390I CCNGG 6 cut(s) 78, 188, 428, 467, 730, 744
Bme18I GGWCC 1 cut(s) 746
BmgT120I GGNCC 2 cut(s) 459, 746
BmrFI CCNGG 6 cut(s) 78, 188, 428, 467, 730, 744
BmsI GCATC 2 cut(s) 167, 206
BpiI GAAGAC 2 cut(s) 257, 417
BpmI CTGGAG 2 cut(s) 23, 712
BsaI GGTCTC 1 cut(s) 498
BsaJI CCNNGG 3 cut(s) 77, 426, 427
BsaWI WCCGGW 1 cut(s) 875
BsaXI ACNNNNNCTCC 6 cut(s) 18, 21, 48, 51, 724, 754
Bsc4I CCNNNNNNNGG 1 cut(s) 743
Bse1I ACTGG 3 cut(s) 40, 125, 517
Bse3DI GCAATG 3 cut(s) 418, 623, 867
BseAI TCCGGA 1 cut(s) 875
BseBI CCWGG 6 cut(s) 78, 188, 428, 467, 730, 744
BseDI CCNNGG 3 cut(s) 77, 426, 427
BseGI GGATG 1 cut(s) 462
BseLI CCNNNNNNNGG 1 cut(s) 743
BseMI GCAATG 3 cut(s) 418, 623, 867
BseMII CTCAG 2 cut(s) 237, 285
BseNI ACTGG 3 cut(s) 40, 125, 517
BseRI GAGGAG 2 cut(s) 26, 39
BseXI GCAGC 1 cut(s) 229
BseYI CCCAGC 1 cut(s) 395
BsgI GTGCAG 1 cut(s) 120
BshFI GGCC 2 cut(s) 461, 782
BsiSI CCGG 1 cut(s) 876
BslI CCNNNNNNNGG 1 cut(s) 743
BsmAI GTCTC 2 cut(s) 61, 498
BsmI GAATGC 1 cut(s) 885
BsnI GGCC 2 cut(s) 461, 782
Bso31I GGTCTC 1 cut(s) 498
Bsp13I TCCGGA 1 cut(s) 875
Bsp143I GATC 4 cut(s) 571, 591, 720, 910
BspACI CCGC 1 cut(s) 155
BspANI GGCC 2 cut(s) 461, 782
BspCNI CTCAG 2 cut(s) 238, 286
BspEI TCCGGA 1 cut(s) 875
BspTNI GGTCTC 1 cut(s) 498
BsrDI GCAATG 3 cut(s) 418, 623, 867
BsrI ACTGG 3 cut(s) 40, 125, 517
BssECI CCNNGG 3 cut(s) 77, 426, 427
BssMI GATC 4 cut(s) 571, 591, 720, 910
Bst2UI CCWGG 6 cut(s) 78, 188, 428, 467, 730, 744
Bst4CI ACNGT 4 cut(s) 256, 416, 830, 848
Bst6I CTCTTC 3 cut(s) 64, 267, 449
BstAPI GCANNNNNTGC 1 cut(s) 242
BstC8I GCNNGC 1 cut(s) 234
BstDEI CTNAG 2 cut(s) 246, 294
BstF5I GGATG 1 cut(s) 462
BstH2I RGCGCY 1 cut(s) 928
BstHHI GCGC 1 cut(s) 927
BstKTI GATC 4 cut(s) 574, 594, 723, 913
BstMAI GTCTC 2 cut(s) 61, 498
BstMBI GATC 4 cut(s) 571, 591, 720, 910
BstMWI GCNNNNNNNGC 2 cut(s) 242, 982
BstNI CCWGG 6 cut(s) 78, 188, 428, 467, 730, 744
BstNSI RCATGY 1 cut(s) 140
BstSCI CCNGG 6 cut(s) 76, 186, 426, 465, 728, 742
BstSFI CTRYAG 1 cut(s) 64
BstV1I GCAGC 1 cut(s) 229
BstV2I GAAGAC 2 cut(s) 257, 417
BstX2I RGATCY 2 cut(s) 571, 720
BstYI RGATCY 2 cut(s) 571, 720
BsuRI GGCC 2 cut(s) 461, 782
BtsCI GGATG 1 cut(s) 462
BtsIMutI CAGTG 3 cut(s) 47, 132, 261
Cac8I GCNNGC 1 cut(s) 234
CfoI GCGC 1 cut(s) 927
Cfr13I GGNCC 2 cut(s) 459, 746
Csp6I GTAC 2 cut(s) 167, 766
CviAII CATG 5 cut(s) 8, 53, 137, 319, 488
CviQI GTAC 2 cut(s) 167, 766
DdeI CTNAG 2 cut(s) 246, 294
DpnI GATC 4 cut(s) 573, 593, 722, 912
DpnII GATC 4 cut(s) 571, 591, 720, 910
EaeI YGGCCR 1 cut(s) 780
Eam1104I CTCTTC 3 cut(s) 64, 267, 449
EarI CTCTTC 3 cut(s) 64, 267, 449
Eco31I GGTCTC 1 cut(s) 498
Eco47I GGWCC 1 cut(s) 746
Eco57I CTGAAG 2 cut(s) 519, 989
EcoRI GAATTC 1 cut(s) 752
EcoRII CCWGG 6 cut(s) 76, 186, 426, 465, 728, 742
FaeI CATG 5 cut(s) 11, 56, 140, 322, 491
FalI AAGNNNNNCTT 2 cut(s) 208, 240
FatI CATG 5 cut(s) 7, 52, 136, 318, 487
FbaI TGATCA 1 cut(s) 591
Fnu4HI GCNGC 2 cut(s) 156, 243
FokI GGATG 1 cut(s) 449
Fsp4HI GCNGC 2 cut(s) 156, 243
FspBI CTAG 3 cut(s) 575, 914, 951
GlaI GCGC 1 cut(s) 926
GluI GCNGC 2 cut(s) 156, 243
GsaI CCCAGC 1 cut(s) 399
GsuI CTGGAG 2 cut(s) 23, 712
HaeII RGCGCY 1 cut(s) 928
HaeIII GGCC 2 cut(s) 461, 782
HapII CCGG 1 cut(s) 876
HhaI GCGC 1 cut(s) 927
Hin1II CATG 5 cut(s) 11, 56, 140, 322, 491
Hin6I GCGC 1 cut(s) 925
HinP1I GCGC 1 cut(s) 925
HindIII AAGCTT 1 cut(s) 974
HinfI GANTC 2 cut(s) 259, 566
HpaII CCGG 1 cut(s) 876
Hpy166II GTNNAC 1 cut(s) 208
Hpy188I TCNGA 6 cut(s) 202, 283, 544, 571, 844, 969
Hpy188III TCNNGA 9 cut(s) 269, 407, 497, 575, 693, 749, 876, 908, 914
Hpy8I GTNNAC 1 cut(s) 208
HpyAV CCTTC 4 cut(s) 281, 487, 494, 955
HpyCH4III ACNGT 4 cut(s) 256, 416, 830, 848
HpyCH4IV ACGT 2 cut(s) 385, 528
HpyCH4V TGCA 8 cut(s) 101, 197, 236, 423, 583, 662, 860, 883
HpyF10VI GCNNNNNNNGC 2 cut(s) 242, 982
HpyF3I CTNAG 2 cut(s) 246, 294
HpySE526I ACGT 2 cut(s) 385, 528
Hsp92II CATG 5 cut(s) 11, 56, 140, 322, 491
HspAI GCGC 1 cut(s) 925
Kpn2I TCCGGA 1 cut(s) 875
Ksp22I TGATCA 1 cut(s) 591
Kzo9I GATC 4 cut(s) 571, 591, 720, 910
LmnI GCTCC 2 cut(s) 290, 695
Lsp1109I GCAGC 1 cut(s) 229
LweI GCATC 2 cut(s) 167, 206
MaeI CTAG 3 cut(s) 575, 914, 951
MaeII ACGT 2 cut(s) 385, 528
MaeIII GTNAC 2 cut(s) 127, 256
MalI GATC 4 cut(s) 573, 593, 722, 912
MboI GATC 4 cut(s) 571, 591, 720, 910
MboII GAAGA 6 cut(s) 51, 254, 262, 422, 466, 982
MflI RGATCY 2 cut(s) 571, 720
MlsI TGGCCA 1 cut(s) 782
MluCI AATT 6 cut(s) 331, 676, 752, 887, 917, 935
MluNI TGGCCA 1 cut(s) 782
MlyI GAGTC 2 cut(s) 253, 575
MmeI TCCRAC 2 cut(s) 644, 822
MnlI CCTC 7 cut(s) 47, 60, 276, 291, 308, 450, 620
Mox20I TGGCCA 1 cut(s) 782
MroI TCCGGA 1 cut(s) 875
MroXI GAANNNNTTC 1 cut(s) 605
MscI TGGCCA 1 cut(s) 782
MseI TTAA 2 cut(s) 381, 893
Msp20I TGGCCA 1 cut(s) 782
MspI CCGG 1 cut(s) 876
MspR9I CCNGG 6 cut(s) 78, 188, 428, 467, 730, 744
Mva1269I GAATGC 1 cut(s) 885
MvaI CCWGG 6 cut(s) 78, 188, 428, 467, 730, 744
MwoI GCNNNNNNNGC 2 cut(s) 242, 982
NdeII GATC 4 cut(s) 571, 591, 720, 910
NlaIII CATG 5 cut(s) 11, 56, 140, 322, 491
NmuCI GTSAC 2 cut(s) 127, 256
NspI RCATGY 1 cut(s) 140
PasI CCCWGGG 1 cut(s) 427
PciI ACATGT 1 cut(s) 136
PctI GAATGC 1 cut(s) 885
PdmI GAANNNNTTC 1 cut(s) 605
PflMI CCANNNNNTGG 1 cut(s) 743
PfoI TCCNGGA 1 cut(s) 728
PkrI GCNGC 2 cut(s) 157, 244
PleI GAGTC 2 cut(s) 253, 574
PpsI GAGTC 2 cut(s) 253, 574
PscI ACATGT 1 cut(s) 136
Psp1406I AACGTT 1 cut(s) 528
Psp6I CCWGG 6 cut(s) 76, 186, 426, 465, 728, 742
PspFI CCCAGC 1 cut(s) 395
PspGI CCWGG 6 cut(s) 76, 186, 426, 465, 728, 742
PspPI GGNCC 2 cut(s) 459, 746
PsuI RGATCY 2 cut(s) 571, 720
RsaI GTAC 2 cut(s) 168, 767
RsaNI GTAC 2 cut(s) 167, 766
SaqAI TTAA 2 cut(s) 381, 893
SatI GCNGC 2 cut(s) 156, 243
Sau3AI GATC 4 cut(s) 571, 591, 720, 910
Sau96I GGNCC 2 cut(s) 459, 746
ScaI AGTACT 1 cut(s) 168
SchI GAGTC 2 cut(s) 253, 575
ScrFI CCNGG 6 cut(s) 78, 188, 428, 467, 730, 744
SfaNI GCATC 2 cut(s) 167, 206
SfcI CTRYAG 1 cut(s) 64
SinI GGWCC 1 cut(s) 746
SpeI ACTAGT 1 cut(s) 950
Sse9I AATT 6 cut(s) 331, 676, 752, 887, 917, 935
SsiI CCGC 1 cut(s) 155
SspMI CTAG 3 cut(s) 575, 914, 951
StyD4I CCNGG 6 cut(s) 76, 186, 426, 465, 728, 742
TaaI ACNGT 4 cut(s) 256, 416, 830, 848
TaiI ACGT 2 cut(s) 388, 531
TaqI TCGA 1 cut(s) 939
TasI AATT 6 cut(s) 331, 676, 752, 887, 917, 935
TatI WGTACW 2 cut(s) 166, 765
TauI GCSGC 1 cut(s) 158
Tru1I TTAA 2 cut(s) 381, 893
Tru9I TTAA 2 cut(s) 381, 893
TscAI CASTG 3 cut(s) 47, 132, 261
TseFI GTSAC 2 cut(s) 127, 256
TseI GCWGC 1 cut(s) 242
Tsp45I GTSAC 2 cut(s) 127, 256
TspDTI ATGAA 5 cut(s) 300, 381, 476, 703, 745
TspGWI ACGGA 1 cut(s) 602
TspRI CASTG 3 cut(s) 47, 132, 261
Van91I CCANNNNNTGG 1 cut(s) 743
VpaK11BI GGWCC 1 cut(s) 746
XapI RAATTY 2 cut(s) 752, 887
XbaI TCTAGA 2 cut(s) 574, 913
XceI RCATGY 1 cut(s) 140
XmnI GAANNNNTTC 1 cut(s) 605
XspI CTAG 3 cut(s) 575, 914, 951
ZrmI AGTACT 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.