AT3G47990

RING-type zinc-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012512
Physical Location & Seq
Reverse (-)
17713094 .. 17716349
3256 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G47990.2

Sequence Viewer

Length: 1077 bp
ATGGCGATGAGAGGTGTCGATTTCAAGTGGTACGATGGGTTCTTCTTGTCGATGCTTGCGACTAGTGTAATCATTGTAGCTGTCAACTGGAACAGATATCGAGCTTGTGAATACCCGTTGCATATATGGATTGTGGTCGATTACACCACCGTCTTTATCTTCCGTGTCTTCATGTTTGTTGACAATGGTCTTGCTTCTGGACTTGGCTTGGATTTTGGAAGTCAACAGCGGAACGCCATGTTTTGTGGGAGAGTGGTTGTCCTGTCTGTCCTATCTCTGCTGCTGTATCCATTTCTGTGGGCTTGGACTGTAATTGGTACACAATGGTTTACAAAGTCGAAAACTTGTTTACCTGAAGAAGGCCAGAAATGGGGCTTTCTTATTTGGTTGATGTTTAGCTACTGTGGCCTCCTCTGCATTGCTTTCATCTGTGTCGGAAAGTGGTTGACACGAAGACAGGTACACTTATTACGTGCTCAGCAGGGAATTCCGATTTCAGAGTTCGGGATTTTAGTTGACATGATTAGGGTACCTGACTGGGCATTCGAAGCCGCAGGCCAAGAGATGAGAGGCATAAGTCAAGATGCTGCTACATATCATCCTGGACTTTACTTGACTCCAGCCCAGACAGAAGCTGTTGAGGCACTCATTCAAGAACTTCCTAAGTTCAGGTTAAAAGCTGTGCCAGATGACTGCGGTGAATGCTTAATCTGCTTAGAGGAGTTCCATATCGGCCATGAGGTTAGAGGTTTACCTTGCGCCCATAATTTCCATGTGGAGTGCATAGACCAGTGGCTGCGTTTAAACGTGAAATGTCCCCGTTGCCGGTGCTCGGTTTTCCCAGACCTCGATCTCAGTGCATTATCCAACCTCCAGAGCTCAGGAACCGAACAACATTCACAAGTAAACACAGAAACATCAGAAGCTCGGTACATAAGAAGCCAACCTCAGAGCGAGAGCTACTTCTTGAGAGTTCAATCCTTAATTCACCCAGTCCACACAGATACCGCTCTGGAGACTGCAGAGAACGGCGGGGTTCCTCCTGTCTTGACCGATCTATCTCCATCTCGGAGATGA

Protein Analysis

358

Amino Acids

40.69

Weight (kDa)

5.93

Isoelectric Point (pI)

43.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 218 - 260 1.8e-13 Ring finger domain
zf-RING_11 PF17123 218 - 246 3.2e-08 RING-like zinc finger
zf-C3HC4_2 PF13923 218 - 259 4.6e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 219 - 257 2.8e-06 RING-type zinc-finger
zf-C3HC4 PF00097 219 - 259 5.3e-06 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 236 - 260 4.8e-06 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012512)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G47990 AT3G47990 AT3G47990 AT3G47990 AT3G47990
fragaria_vesca FvH4_5g05210 FvH4_5g05210
malus_domestica MD06G1175600.v1.1
prunus_persica Prupe.5G174900_v2.0.a1
pyrus_communis pycom06g15630 pycom14g15130
rosa_chinensis RchiOBHm_Chr7g0193701
rosa_laevigata RLG00000004250
rosa_multiflora Rmu_sc0001436.1_g000009
rosa_roxburghii Rroxscaffold_3G00261890
rosa_rugosa Rorug07G0011400
rosa_samantha Rh7AG138200 Rh7DG139500
rosa_wichuraiana Rw7G011770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 529
AccB1I GGYRCC 1 cut(s) 529
AccBSI CCGCTC 1 cut(s) 1010
AciI CCGC 5 cut(s) 229, 552, 696, 1008, 1032
AcoI YGGCCR 1 cut(s) 733
AcsI RAATTY 1 cut(s) 486
AcuI CTGAAG 1 cut(s) 375
AfaI GTAC 5 cut(s) 32, 319, 462, 531, 932
AfiI CCNNNNNNNGG 4 cut(s) 359, 370, 825, 832
AgsI TTSAA 3 cut(s) 25, 653, 977
AhlI ACTAGT 1 cut(s) 62
AjnI CCWGG 1 cut(s) 601
AluBI AGCT 8 cut(s) 80, 104, 399, 635, 680, 879, 926, 960
AluI AGCT 8 cut(s) 80, 104, 399, 635, 680, 879, 926, 960
Alw21I GWGCWC 3 cut(s) 478, 833, 881
Alw26I GTCTC 1 cut(s) 1010
AlwNI CAGNNNCTG 2 cut(s) 635, 796
AoxI GGCC 4 cut(s) 361, 406, 556, 733
ApeKI GCWGC 3 cut(s) 280, 587, 796
ApoI RAATTY 1 cut(s) 486
ArsI GACNNNNNNTTYG 2 cut(s) 527, 559
Asp718I GGTACC 1 cut(s) 529
AspLEI GCGC 1 cut(s) 761
AsuHPI GGTGA 2 cut(s) 710, 980
AsuII TTCGAA 1 cut(s) 546
BanI GGYRCC 1 cut(s) 529
BanII GRGCYC 1 cut(s) 881
BbsI GAAGAC 2 cut(s) 160, 460
Bbv12I GWGCWC 3 cut(s) 478, 833, 881
BbvI GCAGC 3 cut(s) 267, 574, 783
BccI CCATC 2 cut(s) 29, 1072
BceAI ACGGC 1 cut(s) 1045
BcgI CGANNNNNNTGC 2 cut(s) 839, 873
BciT130I CCWGG 1 cut(s) 603
BciVI GTATCC 1 cut(s) 297
BcoDI GTCTC 1 cut(s) 1010
BcuI ACTAGT 1 cut(s) 62
BfaI CTAG 1 cut(s) 63
BfmI CTRYAG 1 cut(s) 1020
BfuI GTATCC 1 cut(s) 297
BisI GCNGC 4 cut(s) 281, 552, 588, 797
BlpI GCTNAGC 1 cut(s) 477
BlsI GCNGC 4 cut(s) 282, 553, 589, 798
Bme1390I CCNGG 1 cut(s) 603
BmiI GGNNCC 3 cut(s) 531, 886, 1038
BmrFI CCNGG 1 cut(s) 603
BmrI ACTGGG 2 cut(s) 547, 986
BmsI GCATC 2 cut(s) 42, 574
BmuI ACTGGG 2 cut(s) 547, 986
BoxI GACNNNNGTC 1 cut(s) 186
BpiI GAAGAC 2 cut(s) 160, 460
BpmI CTGGAG 3 cut(s) 603, 857, 1034
Bpu10I CCTNAGC 1 cut(s) 880
Bpu1102I GCTNAGC 1 cut(s) 477
Bpu14I TTCGAA 1 cut(s) 546
BpuEI CTTGAG 1 cut(s) 988
BsaAI YACGTR 1 cut(s) 473
Bsc4I CCNNNNNNNGG 4 cut(s) 359, 370, 825, 832
Bse118I RCCGGY 1 cut(s) 825
Bse1I ACTGG 4 cut(s) 92, 542, 790, 992
Bse3DI GCAATG 1 cut(s) 417
BseBI CCWGG 1 cut(s) 603
BseGI GGATG 1 cut(s) 598
BseLI CCNNNNNNNGG 4 cut(s) 359, 370, 825, 832
BseMI GCAATG 1 cut(s) 417
BseMII CTCAG 4 cut(s) 491, 868, 894, 962
BseNI ACTGG 4 cut(s) 92, 542, 790, 992
BseRI GAGGAG 2 cut(s) 401, 734
BseXI GCAGC 3 cut(s) 267, 574, 783
BshFI GGCC 4 cut(s) 363, 408, 558, 735
BshNI GGYRCC 1 cut(s) 529
BsiHKAI GWGCWC 3 cut(s) 478, 833, 881
BsiSI CCGG 1 cut(s) 826
BslFI GGGAC 1 cut(s) 801
BslI CCNNNNNNNGG 4 cut(s) 359, 370, 825, 832
BsmAI GTCTC 1 cut(s) 1010
BsmFI GGGAC 1 cut(s) 801
BsmI GAATGC 2 cut(s) 542, 707
BsnI GGCC 4 cut(s) 363, 408, 558, 735
Bsp119I TTCGAA 1 cut(s) 546
Bsp1286I GDGCHC 3 cut(s) 478, 833, 881
Bsp143I GATC 2 cut(s) 850, 1054
Bsp1720I GCTNAGC 1 cut(s) 477
BspACI CCGC 5 cut(s) 229, 552, 696, 1008, 1032
BspANI GGCC 4 cut(s) 363, 408, 558, 735
BspCNI CTCAG 4 cut(s) 490, 867, 893, 961
BspLI GGNNCC 3 cut(s) 531, 886, 1038
BspMAI CTGCAG 1 cut(s) 1024
BspT104I TTCGAA 1 cut(s) 546
BspT107I GGYRCC 1 cut(s) 529
BsrBI CCGCTC 1 cut(s) 1010
BsrDI GCAATG 1 cut(s) 417
BsrFI RCCGGY 1 cut(s) 825
BsrI ACTGG 4 cut(s) 92, 542, 790, 992
BssAI RCCGGY 1 cut(s) 825
BssMI GATC 2 cut(s) 850, 1054
Bst2UI CCWGG 1 cut(s) 603
Bst4CI ACNGT 3 cut(s) 151, 310, 404
BstBAI YACGTR 1 cut(s) 473
BstBI TTCGAA 1 cut(s) 546
BstC8I GCNNGC 2 cut(s) 57, 556
BstDEI CTNAG 6 cut(s) 477, 663, 715, 854, 880, 948
BstENI CCTNNNNNAGG 1 cut(s) 357
BstF5I GGATG 1 cut(s) 598
BstHHI GCGC 1 cut(s) 761
BstKTI GATC 2 cut(s) 853, 1057
BstMAI GTCTC 1 cut(s) 1010
BstMBI GATC 2 cut(s) 850, 1054
BstMWI GCNNNNNNNGC 6 cut(s) 405, 414, 548, 641, 702, 711
BstNI CCWGG 1 cut(s) 603
BstPAI GACNNNNGTC 1 cut(s) 186
BstSCI CCNGG 1 cut(s) 601
BstSFI CTRYAG 1 cut(s) 1020
BstV1I GCAGC 3 cut(s) 267, 574, 783
BstV2I GAAGAC 2 cut(s) 160, 460
BstXI CCANNNNNNTGG 1 cut(s) 297
BsuI GTATCC 1 cut(s) 297
BsuRI GGCC 4 cut(s) 363, 408, 558, 735
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 1 cut(s) 598
BtsIMutI CAGTG 2 cut(s) 797, 862
Cac8I GCNNGC 2 cut(s) 57, 556
CaiI CAGNNNCTG 2 cut(s) 635, 796
CfoI GCGC 1 cut(s) 761
Cfr10I RCCGGY 1 cut(s) 825
Csp6I GTAC 5 cut(s) 31, 318, 461, 530, 931
CviAII CATG 5 cut(s) 172, 238, 520, 737, 773
CviQI GTAC 5 cut(s) 31, 318, 461, 530, 931
DdeI CTNAG 6 cut(s) 477, 663, 715, 854, 880, 948
DpnI GATC 2 cut(s) 852, 1056
DpnII GATC 2 cut(s) 850, 1054
DraI TTTAAA 1 cut(s) 804
EaeI YGGCCR 1 cut(s) 733
Ecl136II GAGCTC 1 cut(s) 879
Eco24I GRGCYC 1 cut(s) 881
Eco32I GATATC 1 cut(s) 98
Eco53kI GAGCTC 1 cut(s) 879
Eco57I CTGAAG 1 cut(s) 375
EcoICRI GAGCTC 1 cut(s) 879
EcoNI CCTNNNNNAGG 1 cut(s) 357
EcoRI GAATTC 1 cut(s) 486
EcoRII CCWGG 1 cut(s) 601
EcoRV GATATC 1 cut(s) 98
EcoT38I GRGCYC 1 cut(s) 881
FaeI CATG 5 cut(s) 175, 241, 523, 740, 776
FaqI GGGAC 1 cut(s) 801
FatI CATG 5 cut(s) 171, 237, 519, 736, 772
FauI CCCGC 1 cut(s) 1025
Fnu4HI GCNGC 4 cut(s) 281, 552, 588, 797
FokI GGATG 1 cut(s) 585
FriOI GRGCYC 1 cut(s) 881
Fsp4HI GCNGC 4 cut(s) 281, 552, 588, 797
FspBI CTAG 1 cut(s) 63
GlaI GCGC 1 cut(s) 760
GluI GCNGC 4 cut(s) 281, 552, 588, 797
GsuI CTGGAG 3 cut(s) 603, 857, 1034
HaeIII GGCC 4 cut(s) 363, 408, 558, 735
HapII CCGG 1 cut(s) 826
HhaI GCGC 1 cut(s) 761
Hin1II CATG 5 cut(s) 175, 241, 523, 740, 776
Hin6I GCGC 1 cut(s) 759
HinP1I GCGC 1 cut(s) 759
HincII GTYRAC 5 cut(s) 85, 181, 224, 447, 517
HindII GTYRAC 5 cut(s) 85, 181, 224, 447, 517
HinfI GANTC 1 cut(s) 616
HpaII CCGG 1 cut(s) 826
HphI GGTGA 2 cut(s) 710, 980
Hpy188I TCNGA 6 cut(s) 437, 492, 499, 922, 951, 1071
Hpy188III TCNNGA 9 cut(s) 198, 505, 581, 653, 874, 882, 967, 1013, 1048
HpyAV CCTTC 1 cut(s) 353
HpyCH4III ACNGT 3 cut(s) 151, 310, 404
HpyCH4IV ACGT 2 cut(s) 472, 807
HpyCH4V TGCA 5 cut(s) 121, 417, 783, 860, 1022
HpyF10VI GCNNNNNNNGC 6 cut(s) 405, 414, 548, 641, 702, 711
HpyF3I CTNAG 6 cut(s) 477, 663, 715, 854, 880, 948
HpySE526I ACGT 2 cut(s) 472, 807
Hsp92II CATG 5 cut(s) 175, 241, 523, 740, 776
HspAI GCGC 1 cut(s) 759
KpnI GGTACC 1 cut(s) 533
Kzo9I GATC 2 cut(s) 850, 1054
Lsp1109I GCAGC 3 cut(s) 267, 574, 783
LweI GCATC 2 cut(s) 42, 574
MaeI CTAG 1 cut(s) 63
MaeII ACGT 2 cut(s) 472, 807
MalI GATC 2 cut(s) 852, 1056
MbiI CCGCTC 1 cut(s) 1010
MboI GATC 2 cut(s) 850, 1054
MboII GAAGA 5 cut(s) 34, 151, 160, 368, 465
MhlI GDGCHC 3 cut(s) 478, 833, 881
MluCI AATT 4 cut(s) 312, 486, 766, 984
MlyI GAGTC 1 cut(s) 610
MmeI TCCRAC 2 cut(s) 415, 891
MseI TTAA 4 cut(s) 674, 707, 803, 983
MslI CAYNNNNRTG 1 cut(s) 295
MspA1I CMGCKG 1 cut(s) 229
MspI CCGG 1 cut(s) 826
MspR9I CCNGG 1 cut(s) 603
MssI GTTTAAAC 1 cut(s) 804
Mva1269I GAATGC 2 cut(s) 542, 707
MvaI CCWGG 1 cut(s) 603
MwoI GCNNNNNNNGC 6 cut(s) 405, 414, 548, 641, 702, 711
NdeII GATC 2 cut(s) 850, 1054
NlaIII CATG 5 cut(s) 175, 241, 523, 740, 776
NlaIV GGNNCC 3 cut(s) 531, 886, 1038
NspV TTCGAA 1 cut(s) 546
PcsI WCGNNNNNNNCGW 1 cut(s) 56
PctI GAATGC 2 cut(s) 542, 707
PfoI TCCNGGA 1 cut(s) 601
PkrI GCNGC 4 cut(s) 282, 553, 589, 798
PleI GAGTC 1 cut(s) 610
PmeI GTTTAAAC 1 cut(s) 804
PpsI GAGTC 1 cut(s) 610
Ppu21I YACGTR 1 cut(s) 473
PshAI GACNNNNGTC 1 cut(s) 186
Psp124BI GAGCTC 1 cut(s) 881
Psp6I CCWGG 1 cut(s) 601
PspGI CCWGG 1 cut(s) 601
PspN4I GGNNCC 3 cut(s) 531, 886, 1038
PsrI GAACNNNNNNTAC 2 cut(s) 23, 55
PstI CTGCAG 1 cut(s) 1024
PstNI CAGNNNCTG 2 cut(s) 635, 796
RsaI GTAC 5 cut(s) 32, 319, 462, 531, 932
RsaNI GTAC 5 cut(s) 31, 318, 461, 530, 931
RseI CAYNNNNRTG 1 cut(s) 295
SacI GAGCTC 1 cut(s) 881
SaqAI TTAA 4 cut(s) 674, 707, 803, 983
SatI GCNGC 4 cut(s) 281, 552, 588, 797
Sau3AI GATC 2 cut(s) 850, 1054
SchI GAGTC 1 cut(s) 610
ScrFI CCNGG 1 cut(s) 603
SduI GDGCHC 3 cut(s) 478, 833, 881
SfaNI GCATC 2 cut(s) 42, 574
SfcI CTRYAG 1 cut(s) 1020
SfuI TTCGAA 1 cut(s) 546
SmiMI CAYNNNNRTG 1 cut(s) 295
SmlI CTYRAG 1 cut(s) 967
SmoI CTYRAG 1 cut(s) 967
SpeI ACTAGT 1 cut(s) 62
Sse9I AATT 4 cut(s) 312, 486, 766, 984
SsiI CCGC 5 cut(s) 229, 552, 696, 1008, 1032
SspMI CTAG 1 cut(s) 63
SstI GAGCTC 1 cut(s) 881
StyD4I CCNGG 1 cut(s) 601
TaaI ACNGT 3 cut(s) 151, 310, 404
TaiI ACGT 2 cut(s) 475, 810
TaqI TCGA 7 cut(s) 18, 50, 100, 138, 338, 546, 849
TaqII GACCGA 1 cut(s) 1067
TasI AATT 4 cut(s) 312, 486, 766, 984
TauI GCSGC 1 cut(s) 554
Tru1I TTAA 4 cut(s) 674, 707, 803, 983
Tru9I TTAA 4 cut(s) 674, 707, 803, 983
TscAI CASTG 2 cut(s) 797, 862
TseI GCWGC 3 cut(s) 280, 587, 796
TspDTI ATGAA 2 cut(s) 160, 415
TspGWI ACGGA 1 cut(s) 152
TspRI CASTG 2 cut(s) 797, 862
XagI CCTNNNNNAGG 1 cut(s) 357
XapI RAATTY 1 cut(s) 486
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.