Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0012512

Physical Location & Seq

Genomic Coordinates Reverse (-)

11840930 .. 11844327

Gene Structure 3398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG139500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGTTTGTTGATAATGGGCTGGCAGCTGGAATGGGTTTGGATTTTGGGTGGCAGCAAAGATATGCTCGTTTCTGTGGGAGAGTAGTGGTTCTTTCAATTCTTTCTCTGCTACTCTATCCATTTCTTTGGGCTTGGACGGTCATTGGGACTCTGTGGTTTAGAAGCTCGAAGGACTGTTTGCCTGAAGATGGACAGAAATGGGGCTTTCTTATTTGGTTGCTTTTTAGTTACTGTGCACTACTTTGCATTTCGTGCATGTCACTTGGGAAGTGGTTGACACGAAGACAGGCACACTTAGTGCGTGCTCAACAAGGGATTCCTGTATCAGAGTATGGGGTTTTGGTTGATATGATACGGGTGCCAGATTGGGCATTTGAAGCTGCAGGTCAAGAGGCAAGAGGAATGGGTCAAGAAGCTGCATACCAACCTGGACTTTACTTGACAACAGCACAGAGAGAAGCAGTGGAGGCACTCATTCAGGAGCTTCCAAAGTTCAGGTTGAAGGCTGTTCCAACTGATTGCAGTGAATGTCCAATCTGCTTAGAAGAGTTCTATGAAGGCAATGAGGTTCGCGGCCTACCTTGCGCTCACAATTTCCATGTAGAATGCATCGATGAGTGGCTTCGATTGAATGTGAAATGTCCTCGGTGCCGTTGCTCAGTCTTTCCGAATCTCGACCTCAGTGCTATTTCCACTCTCCGAGCTGAGTCTGAACGGTCATCTGTCATGTTAACTGCCAACCGGTATGTGAGAACCCAACCGTCAAGTCAGAGCTATATGCTGAGATTGCAGGGTTTGCTCCACCCAGTCCATACAGAAACTGCAAGCAATGGGGCGGACACTGCTTTGGAAACTGCTGAGAATGGGGGTGTTGCCATGTCTATCCGGGATCCATCAAGCCCAGGACAGGTCCCTTCTGTTGGACATGTTAATAGTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009743 GO:0009756 GO:0009987 GO:0010033 GO:0010182 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023052 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

313

Amino Acids

34.92

Weight (kDa)

5.91

Isoelectric Point (pI)

49.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	176 - 218	9.9e-15	Ring finger domain
zf-RING_11	PF17123	176 - 204	3.1e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	176 - 217	3.8e-10	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	177 - 217	4e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	177 - 215	5.5e-08	RING-type zinc-finger
zf-rbx1	PF12678	177 - 218	1.8e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012512)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47990 AT3G47990 AT3G47990 AT3G47990 AT3G47990
fragaria_vesca	FvH4_5g05210 FvH4_5g05210
malus_domestica	MD06G1175600.v1.1
prunus_persica	Prupe.5G174900_v2.0.a1
pyrus_communis	pycom06g15630 pycom14g15130
rosa_chinensis	RchiOBHm_Chr7g0193701
rosa_laevigata	RLG00000004250
rosa_multiflora	Rmu_sc0001436.1_g000009
rosa_roxburghii	Rroxscaffold_3G00261890
rosa_rugosa	Rorug07G0011400
rosa_samantha	Rh7AG138200 Rh7DG139500
rosa_wichuraiana	Rw7G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	374
AccB1I	GGYRCC	2 cut(s)	358, 648
AccII	CGCG	1 cut(s)	573
AciI	CCGC	2 cut(s)	573, 836
AclWI	GGATC	2 cut(s)	884, 897
AcuI	CTGAAG	1 cut(s)	204
AdeI	CACNNNGTG	1 cut(s)	298
AfiI	CCNNNNNNNGG	3 cut(s)	188, 907, 920
AflIII	ACRYGT	1 cut(s)	925
AgeI	ACCGGT	1 cut(s)	741
AgsI	TTSAA	4 cut(s)	96, 377, 502, 631
AjnI	CCWGG	2 cut(s)	427, 901
AluBI	AGCT	7 cut(s)	26, 165, 380, 416, 484, 704, 774
AluI	AGCT	7 cut(s)	26, 165, 380, 416, 484, 704, 774
Alw21I	GWGCWC	2 cut(s)	238, 307
Alw44I	GTGCAC	1 cut(s)	234
AlwI	GGATC	2 cut(s)	884, 897
AlwNI	CAGNNNCTG	1 cut(s)	821
AoxI	GGCC	1 cut(s)	574
ApaLI	GTGCAC	1 cut(s)	234
ApeKI	GCWGC	4 cut(s)	23, 52, 380, 416
AsiGI	ACCGGT	1 cut(s)	741
AspLEI	GCGC	1 cut(s)	587
AspS9I	GGNCC	1 cut(s)	910
AsuC2I	CCSGG	1 cut(s)	887
AvaII	GGWCC	1 cut(s)	910
BaeGI	GKGCMC	1 cut(s)	238
BamHI	GGATCC	1 cut(s)	889
BanI	GGYRCC	2 cut(s)	358, 648
BbsI	GAAGAC	1 cut(s)	289
Bbv12I	GWGCWC	2 cut(s)	238, 307
BbvI	GCAGC	4 cut(s)	35, 64, 367, 403
BccI	CCATC	2 cut(s)	182, 901
BceAI	ACGGC	1 cut(s)	636
BcgI	CGANNNNNNTGC	2 cut(s)	665, 699
BciT130I	CCWGG	2 cut(s)	429, 903
BcnI	CCSGG	1 cut(s)	887
BfmI	CTRYAG	1 cut(s)	381
BfuAI	ACCTGC	1 cut(s)	374
BisI	GCNGC	5 cut(s)	24, 53, 381, 417, 574
BlsI	GCNGC	5 cut(s)	25, 54, 382, 418, 575
Bme1390I	CCNGG	3 cut(s)	429, 887, 903
Bme18I	GGWCC	1 cut(s)	910
BmgT120I	GGNCC	1 cut(s)	910
BmiI	GGNNCC	4 cut(s)	360, 650, 891, 912
BmrFI	CCNGG	3 cut(s)	429, 887, 903
BmrI	ACTGGG	1 cut(s)	800
BmsI	GCATC	1 cut(s)	618
BmuI	ACTGGG	1 cut(s)	800
BpiI	GAAGAC	1 cut(s)	289
BpuMI	CCSGG	1 cut(s)	887
Bsa29I	ATCGAT	1 cut(s)	612
BsaJI	CCNNGG	2 cut(s)	644, 901
BsaWI	WCCGGW	1 cut(s)	741
Bsc4I	CCNNNNNNNGG	3 cut(s)	188, 907, 920
Bse118I	RCCGGY	1 cut(s)	741
Bse1I	ACTGG	1 cut(s)	806
Bse3DI	GCAATG	2 cut(s)	568, 835
BseBI	CCWGG	2 cut(s)	429, 903
BseCI	ATCGAT	1 cut(s)	612
BseDI	CCNNGG	2 cut(s)	644, 901
BseLI	CCNNNNNNNGG	3 cut(s)	188, 907, 920
BseMI	GCAATG	2 cut(s)	568, 835
BseMII	CTCAG	5 cut(s)	672, 694, 696, 773, 849
BseNI	ACTGG	1 cut(s)	806
BseSI	GKGCMC	1 cut(s)	238
BseXI	GCAGC	4 cut(s)	35, 64, 367, 403
Bsh1236I	CGCG	1 cut(s)	573
BshFI	GGCC	1 cut(s)	576
BshNI	GGYRCC	2 cut(s)	358, 648
BshTI	ACCGGT	1 cut(s)	741
BshVI	ATCGAT	1 cut(s)	612
BsiHKAI	GWGCWC	2 cut(s)	238, 307
BsiSI	CCGG	2 cut(s)	742, 886
BslFI	GGGAC	2 cut(s)	160, 896
BslI	CCNNNNNNNGG	3 cut(s)	188, 907, 920
BsmFI	GGGAC	2 cut(s)	160, 896
BsmI	GAATGC	1 cut(s)	611
BsnI	GGCC	1 cut(s)	576
Bsp1286I	GDGCHC	2 cut(s)	238, 307
Bsp143I	GATC	1 cut(s)	889
BspACI	CCGC	2 cut(s)	573, 836
BspANI	GGCC	1 cut(s)	576
BspCNI	CTCAG	5 cut(s)	671, 693, 697, 774, 850
BspDI	ATCGAT	1 cut(s)	612
BspFNI	CGCG	1 cut(s)	573
BspLI	GGNNCC	4 cut(s)	360, 650, 891, 912
BspMAI	CTGCAG	1 cut(s)	385
BspMI	ACCTGC	1 cut(s)	374
BspPI	GGATC	2 cut(s)	884, 897
BspT107I	GGYRCC	2 cut(s)	358, 648
BsrDI	GCAATG	2 cut(s)	568, 835
BsrFI	RCCGGY	1 cut(s)	741
BsrI	ACTGG	1 cut(s)	806
BssAI	RCCGGY	1 cut(s)	741
BssECI	CCNNGG	2 cut(s)	644, 901
BssMI	GATC	1 cut(s)	889
Bst2UI	CCWGG	2 cut(s)	429, 903
Bst4CI	ACNGT	5 cut(s)	139, 176, 233, 717, 762
Bst6I	CTCTTC	1 cut(s)	540
BstAPI	GCANNNNNTGC	2 cut(s)	252, 796
BstC8I	GCNNGC	3 cut(s)	21, 303, 826
BstDEI	CTNAG	7 cut(s)	295, 541, 658, 680, 705, 782, 858
BstFNI	CGCG	1 cut(s)	573
BstHHI	GCGC	1 cut(s)	587
BstKTI	GATC	1 cut(s)	892
BstMBI	GATC	1 cut(s)	889
BstMWI	GCNNNNNNNGC	7 cut(s)	252, 377, 467, 582, 787, 796, 842
BstNI	CCWGG	2 cut(s)	429, 903
BstNSI	RCATGY	2 cut(s)	259, 929
BstSCI	CCNGG	3 cut(s)	427, 885, 901
BstSFI	CTRYAG	1 cut(s)	381
BstSLI	GKGCMC	1 cut(s)	238
BstUI	CGCG	1 cut(s)	573
BstV1I	GCAGC	4 cut(s)	35, 64, 367, 403
BstV2I	GAAGAC	1 cut(s)	289
BstX2I	RGATCY	1 cut(s)	889
BstXI	CCANNNNNNTGG	1 cut(s)	126
BstYI	RGATCY	1 cut(s)	889
Bsu15I	ATCGAT	1 cut(s)	612
BsuRI	GGCC	1 cut(s)	576
BsuTUI	ATCGAT	1 cut(s)	612
BtsI	GCAGTG	3 cut(s)	468, 529, 840
BtsIMutI	CAGTG	4 cut(s)	468, 529, 688, 840
BveI	ACCTGC	1 cut(s)	374
Cac8I	GCNNGC	3 cut(s)	21, 303, 826
CaiI	CAGNNNCTG	1 cut(s)	821
CfoI	GCGC	1 cut(s)	587
Cfr10I	RCCGGY	1 cut(s)	741
Cfr13I	GGNCC	1 cut(s)	910
ClaI	ATCGAT	1 cut(s)	612
CspAI	ACCGGT	1 cut(s)	741
CviAII	CATG	5 cut(s)	256, 599, 727, 877, 926
DdeI	CTNAG	7 cut(s)	295, 541, 658, 680, 705, 782, 858
DpnI	GATC	1 cut(s)	891
DpnII	GATC	1 cut(s)	889
DraIII	CACNNNGTG	1 cut(s)	298
Eam1104I	CTCTTC	1 cut(s)	540
EarI	CTCTTC	1 cut(s)	540
EciI	GGCGGA	1 cut(s)	851
Eco47I	GGWCC	1 cut(s)	910
Eco57I	CTGAAG	1 cut(s)	204
EcoO109I	RGGNCCY	1 cut(s)	910
EcoRII	CCWGG	2 cut(s)	427, 901
EcoT22I	ATGCAT	1 cut(s)	611
FaeI	CATG	5 cut(s)	259, 602, 730, 880, 929
FaqI	GGGAC	2 cut(s)	160, 896
FatI	CATG	5 cut(s)	255, 598, 726, 876, 925
Fnu4HI	GCNGC	5 cut(s)	24, 53, 381, 417, 574
Fsp4HI	GCNGC	5 cut(s)	24, 53, 381, 417, 574
GlaI	GCGC	1 cut(s)	586
GluI	GCNGC	5 cut(s)	24, 53, 381, 417, 574
HaeIII	GGCC	1 cut(s)	576
HapII	CCGG	2 cut(s)	742, 886
HhaI	GCGC	1 cut(s)	587
Hin1II	CATG	5 cut(s)	259, 602, 730, 880, 929
Hin6I	GCGC	1 cut(s)	585
HinP1I	GCGC	1 cut(s)	585
HincII	GTYRAC	2 cut(s)	276, 732
HindII	GTYRAC	2 cut(s)	276, 732
HinfI	GANTC	4 cut(s)	148, 316, 670, 707
HpaI	GTTAAC	1 cut(s)	732
HpaII	CCGG	2 cut(s)	742, 886
Hpy166II	GTNNAC	3 cut(s)	236, 276, 732
Hpy188I	TCNGA	5 cut(s)	328, 669, 701, 712, 771
Hpy188III	TCNNGA	4 cut(s)	389, 410, 479, 674
Hpy8I	GTNNAC	3 cut(s)	236, 276, 732
HpyAV	CCTTC	4 cut(s)	163, 496, 551, 924
HpyCH4III	ACNGT	5 cut(s)	139, 176, 233, 717, 762
HpyCH4V	TGCA	9 cut(s)	236, 246, 255, 383, 419, 522, 609, 790, 824
HpyF10VI	GCNNNNNNNGC	7 cut(s)	252, 377, 467, 582, 787, 796, 842
HpyF3I	CTNAG	7 cut(s)	295, 541, 658, 680, 705, 782, 858
Hsp92II	CATG	5 cut(s)	259, 602, 730, 880, 929
HspAI	GCGC	1 cut(s)	585
KspAI	GTTAAC	1 cut(s)	732
Kzo9I	GATC	1 cut(s)	889
LmnI	GCTCC	2 cut(s)	481, 804
Lsp1109I	GCAGC	4 cut(s)	35, 64, 367, 403
LweI	GCATC	1 cut(s)	618
MaeIII	GTNAC	2 cut(s)	227, 258
MalI	GATC	1 cut(s)	891
MboI	GATC	1 cut(s)	889
MboII	GAAGA	3 cut(s)	197, 294, 557
MflI	RGATCY	1 cut(s)	889
MhlI	GDGCHC	2 cut(s)	238, 307
MluCI	AATT	2 cut(s)	96, 592
MlyI	GAGTC	2 cut(s)	142, 716
MmeI	TCCRAC	2 cut(s)	536, 901
MnlI	CCTC	6 cut(s)	385, 392, 460, 559, 654, 689
Mph1103I	ATGCAT	1 cut(s)	611
MseI	TTAA	2 cut(s)	731, 930
MspA1I	CMGCKG	1 cut(s)	26
MspI	CCGG	2 cut(s)	742, 886
MspR9I	CCNGG	3 cut(s)	429, 887, 903
Mva1269I	GAATGC	1 cut(s)	611
MvaI	CCWGG	2 cut(s)	429, 903
MvnI	CGCG	1 cut(s)	573
MwoI	GCNNNNNNNGC	7 cut(s)	252, 377, 467, 582, 787, 796, 842
NciI	CCSGG	1 cut(s)	887
NdeII	GATC	1 cut(s)	889
NlaIII	CATG	5 cut(s)	259, 602, 730, 880, 929
NlaIV	GGNNCC	4 cut(s)	360, 650, 891, 912
NmuCI	GTSAC	1 cut(s)	258
NsiI	ATGCAT	1 cut(s)	611
NspI	RCATGY	2 cut(s)	259, 929
PciI	ACATGT	1 cut(s)	925
PctI	GAATGC	1 cut(s)	611
PfeI	GAWTC	2 cut(s)	316, 670
PfoI	TCCNGGA	1 cut(s)	885
PinAI	ACCGGT	1 cut(s)	741
PkrI	GCNGC	5 cut(s)	25, 54, 382, 418, 575
PleI	GAGTC	2 cut(s)	142, 715
PpsI	GAGTC	2 cut(s)	142, 715
PpuMI	RGGWCCY	1 cut(s)	910
PscI	ACATGT	1 cut(s)	925
Psp5II	RGGWCCY	1 cut(s)	910
Psp6I	CCWGG	2 cut(s)	427, 901
PspGI	CCWGG	2 cut(s)	427, 901
PspN4I	GGNNCC	4 cut(s)	360, 650, 891, 912
PspPI	GGNCC	1 cut(s)	910
PspPPI	RGGWCCY	1 cut(s)	910
PstI	CTGCAG	1 cut(s)	385
PstNI	CAGNNNCTG	1 cut(s)	821
PsuI	RGATCY	1 cut(s)	889
PvuII	CAGCTG	1 cut(s)	26
SaqAI	TTAA	2 cut(s)	731, 930
SatI	GCNGC	5 cut(s)	24, 53, 381, 417, 574
Sau3AI	GATC	1 cut(s)	889
Sau96I	GGNCC	1 cut(s)	910
SchI	GAGTC	2 cut(s)	142, 716
ScrFI	CCNGG	3 cut(s)	429, 887, 903
SduI	GDGCHC	2 cut(s)	238, 307
SfaNI	GCATC	1 cut(s)	618
SfcI	CTRYAG	1 cut(s)	381
SinI	GGWCC	1 cut(s)	910
Sse9I	AATT	2 cut(s)	96, 592
SsiI	CCGC	2 cut(s)	573, 836
StyD4I	CCNGG	3 cut(s)	427, 885, 901
TaaI	ACNGT	5 cut(s)	139, 176, 233, 717, 762
TaqI	TCGA	4 cut(s)	167, 612, 625, 675
TasI	AATT	2 cut(s)	96, 592
TauI	GCSGC	1 cut(s)	576
TfiI	GAWTC	2 cut(s)	316, 670
Tru1I	TTAA	2 cut(s)	731, 930
Tru9I	TTAA	2 cut(s)	731, 930
TscAI	CASTG	4 cut(s)	468, 529, 688, 847
TseFI	GTSAC	1 cut(s)	258
TseI	GCWGC	4 cut(s)	23, 52, 380, 416
Tsp45I	GTSAC	1 cut(s)	258
TspDTI	ATGAA	1 cut(s)	570
TspRI	CASTG	4 cut(s)	468, 529, 688, 847
VneI	GTGCAC	1 cut(s)	234
VpaK11BI	GGWCC	1 cut(s)	910
XceI	RCATGY	2 cut(s)	259, 929
Zsp2I	ATGCAT	1 cut(s)	611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.