Prupe.5G174900_v2.0.a1

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
14882399 .. 14885986
3588 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G174900.1

Sequence Viewer

Length: 1155 bp
ATGGCCATCCGAGGCGTCGATTTCAAGTGGTACGATGGGTTCTTCTTGTCTATGCTCGCGACAAGTGTAGTCATTGTTGCAATTAATTGGAAACGGTACCATACCTGTACATACCCGTTGCACATATGGATCGTGGTTGATTACACTACTGTGTTTGTTTTTCGGATGTTGATGTTTGTGGATAATGGGCTTGCCTCTGGAATGGGTTTGGATTTTGGGTGGCAGCAGAGATATGCTCGTTTCTGCGGAAGAGTAGTGGTCCTTTCAATTCTTTCTCTGCTACTCTATCCATTTCTTTGGACTTGGACAGTAATTGGTACGCTGTGGTTTAGAAAATCGAAGGACTGTTTGCCTGAAGATGGTCAGAAATGGGGTTTTCTTATTTGGTTACTTTTTAGTTACTGTGCACTACTTTGTGTTGCTTGCATGTCGATTGGGAAGTGGTTGACACGAAGAGAGGCACACTTATTGCGTGCTCAACAAGGGATTCCTGTTTCAGAATATGGGGTTTTGGTTGATATGATTCGGGTGCCAGACTGGGCATTTGAAGCTGCTGGTCAAGAAACAAGAGGGATGGGCCAAGATGCTGCTGCATACCAACCTGGACTTTACTTGACTCCAGCACAGACAGAAGCAGTGGAAGCACTCATTCAGGAGCTTCCAAAGTTCAGACTGAAGGCTGTTCCAACTGATTGCAGTGAATGTCCAATCTGCTTAGAAGAGTTCCATGTAGGCAATGAGGTTCGTGGCCTGCCTTGCGCTCACAATTTCCATGTAGAATGCATCGATGAGTGGCTTCGACTGAATGTGAAATGTCCTCGGTGCCGTTGCTCAGTCTTCCCAAATCTCGACCTTAGTGCTATATCCAATCTTCGTCCTGAATCTGAGCGGTCATCTGTCAGCGTGTTGACAGCCAACCGGTACGTGAGAACCCAACCTTACAGTCAGAGCTATTTGTTGAGGTTACAGGGTCTGCTCCGCCCAGTCTGTACGGAAAATGCAGGTGTAGGTCCATCAGGCAATCAGGCAGACACTGCTCTGGAAACTGCTGAGTACGGAGGCGTTGCTCTGTCTACTCGGGATCCATCAAGCCCAAGGCCAGTCTCTTCCACCGGGCATATTGTTGTTGTTGACTCCACCGCACAACAACAATAG

Protein Analysis

385

Amino Acids

43.22

Weight (kDa)

6.65

Isoelectric Point (pI)

43.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012512)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 992
Acc36I ACCTGC 1 cut(s) 992
Acc65I GGTACC 1 cut(s) 96
AccB1I GGYRCC 3 cut(s) 96, 529, 822
AccBSI CCGCTC 1 cut(s) 889
AccI GTMKAC 1 cut(s) 1073
AccII CGCG 1 cut(s) 59
AciI CCGC 4 cut(s) 246, 889, 979, 1140
AclWI GGATC 3 cut(s) 137, 1076, 1089
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 2 cut(s) 375, 695
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 7 cut(s) 32, 98, 109, 319, 923, 991, 1055
AfiI CCNNNNNNNGG 1 cut(s) 359
AgeI ACCGGT 1 cut(s) 918
AgsI TTSAA 3 cut(s) 25, 267, 548
AjnI CCWGG 1 cut(s) 601
AleI CACNNNNGTG 1 cut(s) 149
AluBI AGCT 3 cut(s) 551, 658, 951
AluI AGCT 3 cut(s) 551, 658, 951
Alw21I GWGCWC 2 cut(s) 409, 478
Alw26I GTCTC 1 cut(s) 1108
Alw44I GTGCAC 1 cut(s) 405
AlwI GGATC 3 cut(s) 137, 1076, 1089
AlwNI CAGNNNCTG 2 cut(s) 973, 1034
Ama87I CYCGRG 1 cut(s) 1077
AoxI GGCC 4 cut(s) 3, 577, 748, 1097
ApaLI GTGCAC 1 cut(s) 405
ApeKI GCWGC 4 cut(s) 223, 551, 587, 590
ArsI GACNNNNNNTTYG 2 cut(s) 527, 559
AseI ATTAAT 1 cut(s) 84
AsiGI ACCGGT 1 cut(s) 918
Asp718I GGTACC 1 cut(s) 96
AspLEI GCGC 1 cut(s) 761
AspS9I GGNCC 3 cut(s) 259, 577, 1010
AsuC2I CCSGG 1 cut(s) 1114
AvaI CYCGRG 1 cut(s) 1077
AvaII GGWCC 2 cut(s) 259, 1010
BaeGI GKGCMC 1 cut(s) 409
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 1081
BanI GGYRCC 3 cut(s) 96, 529, 822
BbsI GAAGAC 1 cut(s) 829
Bbv12I GWGCWC 2 cut(s) 409, 478
BbvI GCAGC 4 cut(s) 235, 538, 574, 577
BccI CCATC 6 cut(s) 14, 29, 353, 568, 1021, 1093
BceAI ACGGC 1 cut(s) 810
BcgI CGANNNNNNTGC 2 cut(s) 839, 873
BciT130I CCWGG 1 cut(s) 603
BcnI CCSGG 1 cut(s) 1114
BcoDI GTCTC 1 cut(s) 1108
BfuAI ACCTGC 1 cut(s) 992
BisI GCNGC 4 cut(s) 224, 552, 588, 591
BlsI GCNGC 4 cut(s) 225, 553, 589, 592
Bme1390I CCNGG 2 cut(s) 603, 1114
Bme18I GGWCC 2 cut(s) 259, 1010
BmeT110I CYCGRG 1 cut(s) 1077
BmgT120I GGNCC 3 cut(s) 259, 577, 1010
BmiI GGNNCC 4 cut(s) 98, 531, 824, 1083
BmrFI CCNGG 2 cut(s) 603, 1114
BmrI ACTGGG 2 cut(s) 547, 977
BmsI GCATC 2 cut(s) 574, 792
BmuI ACTGGG 2 cut(s) 547, 977
BpiI GAAGAC 1 cut(s) 829
BplI GAGNNNNNCTC 2 cut(s) 220, 252
BpmI CTGGAG 1 cut(s) 603
BpuMI CCSGG 1 cut(s) 1114
Bsa29I ATCGAT 1 cut(s) 786
BsaAI YACGTR 1 cut(s) 925
BsaHI GRCGYC 1 cut(s) 15
BsaJI CCNNGG 3 cut(s) 10, 818, 1094
BsaWI WCCGGW 1 cut(s) 918
Bsc4I CCNNNNNNNGG 1 cut(s) 359
Bse118I RCCGGY 1 cut(s) 918
Bse1I ACTGG 3 cut(s) 542, 983, 1100
Bse3DI GCAATG 1 cut(s) 742
BseBI CCWGG 1 cut(s) 603
BseCI ATCGAT 1 cut(s) 786
BseDI CCNNGG 3 cut(s) 10, 818, 1094
BseGI GGATG 3 cut(s) 6, 171, 579
BseLI CCNNNNNNNGG 1 cut(s) 359
BseMI GCAATG 1 cut(s) 742
BseMII CTCAG 3 cut(s) 846, 876, 1041
BseNI ACTGG 3 cut(s) 542, 983, 1100
BseSI GKGCMC 1 cut(s) 409
BseXI GCAGC 4 cut(s) 235, 538, 574, 577
Bsh1236I CGCG 1 cut(s) 59
BshFI GGCC 4 cut(s) 5, 579, 750, 1099
BshNI GGYRCC 3 cut(s) 96, 529, 822
BshTI ACCGGT 1 cut(s) 918
BshVI ATCGAT 1 cut(s) 786
BsiHKAI GWGCWC 2 cut(s) 409, 478
BsiHKCI CYCGRG 1 cut(s) 1077
BsiSI CCGG 2 cut(s) 919, 1113
BslI CCNNNNNNNGG 1 cut(s) 359
BsmAI GTCTC 1 cut(s) 1108
BsmI GAATGC 1 cut(s) 785
BsnI GGCC 4 cut(s) 5, 579, 750, 1099
BsoBI CYCGRG 1 cut(s) 1077
Bsp1286I GDGCHC 2 cut(s) 409, 478
Bsp1407I TGTACA 1 cut(s) 107
Bsp143I GATC 2 cut(s) 129, 1081
Bsp68I TCGCGA 1 cut(s) 59
BspACI CCGC 4 cut(s) 246, 889, 979, 1140
BspANI GGCC 4 cut(s) 5, 579, 750, 1099
BspCNI CTCAG 3 cut(s) 845, 877, 1042
BspDI ATCGAT 1 cut(s) 786
BspFNI CGCG 1 cut(s) 59
BspLI GGNNCC 4 cut(s) 98, 531, 824, 1083
BspMI ACCTGC 1 cut(s) 992
BspPI GGATC 3 cut(s) 137, 1076, 1089
BspT107I GGYRCC 3 cut(s) 96, 529, 822
BsrBI CCGCTC 1 cut(s) 889
BsrDI GCAATG 1 cut(s) 742
BsrFI RCCGGY 1 cut(s) 918
BsrGI TGTACA 1 cut(s) 107
BsrI ACTGG 3 cut(s) 542, 983, 1100
BssAI RCCGGY 1 cut(s) 918
BssECI CCNNGG 3 cut(s) 10, 818, 1094
BssMI GATC 2 cut(s) 129, 1081
BssNI GRCGYC 1 cut(s) 15
BssT1I CCWWGG 1 cut(s) 1094
Bst2UI CCWGG 1 cut(s) 603
Bst4CI ACNGT 6 cut(s) 96, 151, 310, 347, 404, 944
Bst6I CTCTTC 4 cut(s) 244, 448, 714, 1111
BstACI GRCGYC 1 cut(s) 15
BstAPI GCANNNNNTGC 1 cut(s) 1034
BstAUI TGTACA 1 cut(s) 107
BstBAI YACGTR 1 cut(s) 925
BstC8I GCNNGC 5 cut(s) 57, 192, 424, 474, 752
BstDEI CTNAG 5 cut(s) 715, 832, 854, 885, 1050
BstF5I GGATG 3 cut(s) 6, 171, 579
BstFNI CGCG 1 cut(s) 59
BstHHI GCGC 1 cut(s) 761
BstKTI GATC 2 cut(s) 132, 1084
BstMAI GTCTC 1 cut(s) 1108
BstMBI GATC 2 cut(s) 129, 1081
BstMWI GCNNNNNNNGC 4 cut(s) 548, 641, 756, 1034
BstNI CCWGG 1 cut(s) 603
BstNSI RCATGY 1 cut(s) 430
BstSCI CCNGG 2 cut(s) 601, 1112
BstSLI GKGCMC 1 cut(s) 409
BstUI CGCG 1 cut(s) 59
BstV1I GCAGC 4 cut(s) 235, 538, 574, 577
BstV2I GAAGAC 1 cut(s) 829
BstX2I RGATCY 1 cut(s) 1081
BstXI CCANNNNNNTGG 1 cut(s) 297
BstYI RGATCY 1 cut(s) 1081
Bsu15I ATCGAT 1 cut(s) 786
BsuRI GGCC 4 cut(s) 5, 579, 750, 1099
BsuTUI ATCGAT 1 cut(s) 786
BtsCI GGATG 3 cut(s) 6, 171, 579
BtsI GCAGTG 3 cut(s) 642, 703, 1032
BtsIMutI CAGTG 3 cut(s) 642, 703, 1032
BtuMI TCGCGA 1 cut(s) 59
BveI ACCTGC 1 cut(s) 992
Cac8I GCNNGC 5 cut(s) 57, 192, 424, 474, 752
CaiI CAGNNNCTG 2 cut(s) 973, 1034
CfoI GCGC 1 cut(s) 761
Cfr10I RCCGGY 1 cut(s) 918
Cfr13I GGNCC 3 cut(s) 259, 577, 1010
ClaI ATCGAT 1 cut(s) 786
CseI GACGC 1 cut(s) 4
Csp6I GTAC 7 cut(s) 31, 97, 108, 318, 922, 990, 1054
CspAI ACCGGT 1 cut(s) 918
CviAII CATG 3 cut(s) 427, 728, 773
CviQI GTAC 7 cut(s) 31, 97, 108, 318, 922, 990, 1054
DdeI CTNAG 5 cut(s) 715, 832, 854, 885, 1050
DpnI GATC 2 cut(s) 131, 1083
DpnII GATC 2 cut(s) 129, 1081
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 4 cut(s) 244, 448, 714, 1111
EarI CTCTTC 4 cut(s) 244, 448, 714, 1111
EciI GGCGGA 1 cut(s) 968
Eco130I CCWWGG 1 cut(s) 1094
Eco47I GGWCC 2 cut(s) 259, 1010
Eco57I CTGAAG 2 cut(s) 375, 695
Eco88I CYCGRG 1 cut(s) 1077
EcoRII CCWGG 1 cut(s) 601
EcoT14I CCWWGG 1 cut(s) 1094
EcoT22I ATGCAT 1 cut(s) 785
ErhI CCWWGG 1 cut(s) 1094
FaeI CATG 3 cut(s) 430, 731, 776
FatI CATG 3 cut(s) 426, 727, 772
FauNDI CATATG 1 cut(s) 125
FblI GTMKAC 1 cut(s) 1073
Fnu4HI GCNGC 4 cut(s) 224, 552, 588, 591
FokI GGATG 2 cut(s) 178, 586
Fsp4HI GCNGC 4 cut(s) 224, 552, 588, 591
GlaI GCGC 1 cut(s) 760
GluI GCNGC 4 cut(s) 224, 552, 588, 591
GsuI CTGGAG 1 cut(s) 603
HaeIII GGCC 4 cut(s) 5, 579, 750, 1099
HapII CCGG 2 cut(s) 919, 1113
HgaI GACGC 1 cut(s) 4
HhaI GCGC 1 cut(s) 761
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 3 cut(s) 430, 731, 776
Hin6I GCGC 1 cut(s) 759
HinP1I GCGC 1 cut(s) 759
HincII GTYRAC 3 cut(s) 447, 909, 1132
HindII GTYRAC 3 cut(s) 447, 909, 1132
HinfI GANTC 5 cut(s) 487, 523, 616, 881, 1133
HpaII CCGG 2 cut(s) 919, 1113
Hpy166II GTNNAC 5 cut(s) 407, 447, 909, 1074, 1132
Hpy188I TCNGA 7 cut(s) 11, 165, 366, 499, 671, 886, 948
Hpy188III TCNNGA 8 cut(s) 58, 198, 560, 653, 848, 878, 1040, 1079
Hpy8I GTNNAC 5 cut(s) 407, 447, 909, 1074, 1132
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 2 cut(s) 334, 670
HpyCH4III ACNGT 6 cut(s) 96, 151, 310, 347, 404, 944
HpyCH4IV ACGT 1 cut(s) 924
HpyCH4V TGCA 8 cut(s) 80, 121, 407, 426, 593, 696, 783, 1001
HpyF10VI GCNNNNNNNGC 4 cut(s) 548, 641, 756, 1034
HpyF3I CTNAG 5 cut(s) 715, 832, 854, 885, 1050
HpySE526I ACGT 1 cut(s) 924
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 3 cut(s) 430, 731, 776
HspAI GCGC 1 cut(s) 759
KpnI GGTACC 1 cut(s) 100
Kzo9I GATC 2 cut(s) 129, 1081
LmnI GCTCC 2 cut(s) 655, 981
Lsp1109I GCAGC 4 cut(s) 235, 538, 574, 577
LweI GCATC 2 cut(s) 574, 792
MaeII ACGT 1 cut(s) 924
MaeIII GTNAC 3 cut(s) 387, 398, 963
MalI GATC 2 cut(s) 131, 1083
MbiI CCGCTC 1 cut(s) 889
MboI GATC 2 cut(s) 129, 1081
MboII GAAGA 8 cut(s) 34, 261, 368, 465, 731, 829, 863, 1098
MflI RGATCY 1 cut(s) 1081
MhlI GDGCHC 2 cut(s) 409, 478
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 81, 85, 267, 312, 766
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 610, 1127
MmeI TCCRAC 1 cut(s) 710
MnlI CCTC 8 cut(s) 5, 205, 451, 563, 733, 828, 954, 1052
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 785
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 84
MslI CAYNNNNRTG 1 cut(s) 149
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 919, 1113
MspR9I CCNGG 2 cut(s) 603, 1114
Mva1269I GAATGC 1 cut(s) 785
MvaI CCWGG 1 cut(s) 603
MvnI CGCG 1 cut(s) 59
MwoI GCNNNNNNNGC 4 cut(s) 548, 641, 756, 1034
NciI CCSGG 1 cut(s) 1114
NdeI CATATG 1 cut(s) 125
NdeII GATC 2 cut(s) 129, 1081
NlaIII CATG 3 cut(s) 430, 731, 776
NlaIV GGNNCC 4 cut(s) 98, 531, 824, 1083
NruI TCGCGA 1 cut(s) 59
NsiI ATGCAT 1 cut(s) 785
NspI RCATGY 1 cut(s) 430
OliI CACNNNNGTG 1 cut(s) 149
PaqCI CACCTGC 1 cut(s) 992
PctI GAATGC 1 cut(s) 785
PfeI GAWTC 3 cut(s) 487, 523, 881
PinAI ACCGGT 1 cut(s) 918
PkrI GCNGC 4 cut(s) 225, 553, 589, 592
PleI GAGTC 2 cut(s) 610, 1127
PpsI GAGTC 2 cut(s) 610, 1127
Ppu21I YACGTR 1 cut(s) 925
PshBI ATTAAT 1 cut(s) 84
Psp6I CCWGG 1 cut(s) 601
PspGI CCWGG 1 cut(s) 601
PspN4I GGNNCC 4 cut(s) 98, 531, 824, 1083
PspPI GGNCC 3 cut(s) 259, 577, 1010
PsrI GAACNNNNNNTAC 2 cut(s) 23, 55
PstNI CAGNNNCTG 2 cut(s) 973, 1034
PsuI RGATCY 1 cut(s) 1081
RruI TCGCGA 1 cut(s) 59
RsaI GTAC 7 cut(s) 32, 98, 109, 319, 923, 991, 1055
RsaNI GTAC 7 cut(s) 31, 97, 108, 318, 922, 990, 1054
RseI CAYNNNNRTG 1 cut(s) 149
SaqAI TTAA 1 cut(s) 84
SatI GCNGC 4 cut(s) 224, 552, 588, 591
Sau3AI GATC 2 cut(s) 129, 1081
Sau96I GGNCC 3 cut(s) 259, 577, 1010
SchI GAGTC 2 cut(s) 610, 1127
ScrFI CCNGG 2 cut(s) 603, 1114
SduI GDGCHC 2 cut(s) 409, 478
SfaNI GCATC 2 cut(s) 574, 792
SinI GGWCC 2 cut(s) 259, 1010
SmiMI CAYNNNNRTG 1 cut(s) 149
Sse9I AATT 5 cut(s) 81, 85, 267, 312, 766
SsiI CCGC 4 cut(s) 246, 889, 979, 1140
StyD4I CCNGG 2 cut(s) 601, 1112
StyI CCWWGG 1 cut(s) 1094
TaaI ACNGT 6 cut(s) 96, 151, 310, 347, 404, 944
TaiI ACGT 1 cut(s) 927
TaqI TCGA 6 cut(s) 18, 338, 431, 786, 799, 849
TasI AATT 5 cut(s) 81, 85, 267, 312, 766
TatI WGTACW 1 cut(s) 107
TfiI GAWTC 3 cut(s) 487, 523, 881
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TscAI CASTG 3 cut(s) 642, 703, 1039
TseI GCWGC 4 cut(s) 223, 551, 587, 590
TspGWI ACGGA 2 cut(s) 1007, 1071
TspRI CASTG 3 cut(s) 642, 703, 1039
VneI GTGCAC 1 cut(s) 405
VpaK11BI GGWCC 2 cut(s) 259, 1010
VspI ATTAAT 1 cut(s) 84
XceI RCATGY 1 cut(s) 430
XmiI GTMKAC 1 cut(s) 1073
Zsp2I ATGCAT 1 cut(s) 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.