E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G47990 AT3G47990 AT3G47990 AT3G47990 AT3G47990 |
| fragaria_vesca | FvH4_5g05210 FvH4_5g05210 |
| malus_domestica | MD06G1175600.v1.1 |
| prunus_persica | Prupe.5G174900_v2.0.a1 |
| pyrus_communis | pycom06g15630 pycom14g15130 |
| rosa_chinensis | RchiOBHm_Chr7g0193701 |
| rosa_laevigata | RLG00000004250 |
| rosa_multiflora | Rmu_sc0001436.1_g000009 |
| rosa_roxburghii | Rroxscaffold_3G00261890 |
| rosa_rugosa | Rorug07G0011400 |
| rosa_samantha | Rh7AG138200 Rh7DG139500 |
| rosa_wichuraiana | Rw7G011770 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 992 |
| Acc36I | ACCTGC | 1 cut(s) | 992 |
| Acc65I | GGTACC | 1 cut(s) | 96 |
| AccB1I | GGYRCC | 3 cut(s) | 96, 529, 822 |
| AccBSI | CCGCTC | 1 cut(s) | 889 |
| AccI | GTMKAC | 1 cut(s) | 1073 |
| AccII | CGCG | 1 cut(s) | 59 |
| AciI | CCGC | 4 cut(s) | 246, 889, 979, 1140 |
| AclWI | GGATC | 3 cut(s) | 137, 1076, 1089 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcuI | CTGAAG | 2 cut(s) | 375, 695 |
| AcyI | GRCGYC | 1 cut(s) | 15 |
| AfaI | GTAC | 7 cut(s) | 32, 98, 109, 319, 923, 991, 1055 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 359 |
| AgeI | ACCGGT | 1 cut(s) | 918 |
| AgsI | TTSAA | 3 cut(s) | 25, 267, 548 |
| AjnI | CCWGG | 1 cut(s) | 601 |
| AleI | CACNNNNGTG | 1 cut(s) | 149 |
| AluBI | AGCT | 3 cut(s) | 551, 658, 951 |
| AluI | AGCT | 3 cut(s) | 551, 658, 951 |
| Alw21I | GWGCWC | 2 cut(s) | 409, 478 |
| Alw26I | GTCTC | 1 cut(s) | 1108 |
| Alw44I | GTGCAC | 1 cut(s) | 405 |
| AlwI | GGATC | 3 cut(s) | 137, 1076, 1089 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 973, 1034 |
| Ama87I | CYCGRG | 1 cut(s) | 1077 |
| AoxI | GGCC | 4 cut(s) | 3, 577, 748, 1097 |
| ApaLI | GTGCAC | 1 cut(s) | 405 |
| ApeKI | GCWGC | 4 cut(s) | 223, 551, 587, 590 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 527, 559 |
| AseI | ATTAAT | 1 cut(s) | 84 |
| AsiGI | ACCGGT | 1 cut(s) | 918 |
| Asp718I | GGTACC | 1 cut(s) | 96 |
| AspLEI | GCGC | 1 cut(s) | 761 |
| AspS9I | GGNCC | 3 cut(s) | 259, 577, 1010 |
| AsuC2I | CCSGG | 1 cut(s) | 1114 |
| AvaI | CYCGRG | 1 cut(s) | 1077 |
| AvaII | GGWCC | 2 cut(s) | 259, 1010 |
| BaeGI | GKGCMC | 1 cut(s) | 409 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BamHI | GGATCC | 1 cut(s) | 1081 |
| BanI | GGYRCC | 3 cut(s) | 96, 529, 822 |
| BbsI | GAAGAC | 1 cut(s) | 829 |
| Bbv12I | GWGCWC | 2 cut(s) | 409, 478 |
| BbvI | GCAGC | 4 cut(s) | 235, 538, 574, 577 |
| BccI | CCATC | 6 cut(s) | 14, 29, 353, 568, 1021, 1093 |
| BceAI | ACGGC | 1 cut(s) | 810 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 839, 873 |
| BciT130I | CCWGG | 1 cut(s) | 603 |
| BcnI | CCSGG | 1 cut(s) | 1114 |
| BcoDI | GTCTC | 1 cut(s) | 1108 |
| BfuAI | ACCTGC | 1 cut(s) | 992 |
| BisI | GCNGC | 4 cut(s) | 224, 552, 588, 591 |
| BlsI | GCNGC | 4 cut(s) | 225, 553, 589, 592 |
| Bme1390I | CCNGG | 2 cut(s) | 603, 1114 |
| Bme18I | GGWCC | 2 cut(s) | 259, 1010 |
| BmeT110I | CYCGRG | 1 cut(s) | 1077 |
| BmgT120I | GGNCC | 3 cut(s) | 259, 577, 1010 |
| BmiI | GGNNCC | 4 cut(s) | 98, 531, 824, 1083 |
| BmrFI | CCNGG | 2 cut(s) | 603, 1114 |
| BmrI | ACTGGG | 2 cut(s) | 547, 977 |
| BmsI | GCATC | 2 cut(s) | 574, 792 |
| BmuI | ACTGGG | 2 cut(s) | 547, 977 |
| BpiI | GAAGAC | 1 cut(s) | 829 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 220, 252 |
| BpmI | CTGGAG | 1 cut(s) | 603 |
| BpuMI | CCSGG | 1 cut(s) | 1114 |
| Bsa29I | ATCGAT | 1 cut(s) | 786 |
| BsaAI | YACGTR | 1 cut(s) | 925 |
| BsaHI | GRCGYC | 1 cut(s) | 15 |
| BsaJI | CCNNGG | 3 cut(s) | 10, 818, 1094 |
| BsaWI | WCCGGW | 1 cut(s) | 918 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 359 |
| Bse118I | RCCGGY | 1 cut(s) | 918 |
| Bse1I | ACTGG | 3 cut(s) | 542, 983, 1100 |
| Bse3DI | GCAATG | 1 cut(s) | 742 |
| BseBI | CCWGG | 1 cut(s) | 603 |
| BseCI | ATCGAT | 1 cut(s) | 786 |
| BseDI | CCNNGG | 3 cut(s) | 10, 818, 1094 |
| BseGI | GGATG | 3 cut(s) | 6, 171, 579 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 359 |
| BseMI | GCAATG | 1 cut(s) | 742 |
| BseMII | CTCAG | 3 cut(s) | 846, 876, 1041 |
| BseNI | ACTGG | 3 cut(s) | 542, 983, 1100 |
| BseSI | GKGCMC | 1 cut(s) | 409 |
| BseXI | GCAGC | 4 cut(s) | 235, 538, 574, 577 |
| Bsh1236I | CGCG | 1 cut(s) | 59 |
| BshFI | GGCC | 4 cut(s) | 5, 579, 750, 1099 |
| BshNI | GGYRCC | 3 cut(s) | 96, 529, 822 |
| BshTI | ACCGGT | 1 cut(s) | 918 |
| BshVI | ATCGAT | 1 cut(s) | 786 |
| BsiHKAI | GWGCWC | 2 cut(s) | 409, 478 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1077 |
| BsiSI | CCGG | 2 cut(s) | 919, 1113 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 359 |
| BsmAI | GTCTC | 1 cut(s) | 1108 |
| BsmI | GAATGC | 1 cut(s) | 785 |
| BsnI | GGCC | 4 cut(s) | 5, 579, 750, 1099 |
| BsoBI | CYCGRG | 1 cut(s) | 1077 |
| Bsp1286I | GDGCHC | 2 cut(s) | 409, 478 |
| Bsp1407I | TGTACA | 1 cut(s) | 107 |
| Bsp143I | GATC | 2 cut(s) | 129, 1081 |
| Bsp68I | TCGCGA | 1 cut(s) | 59 |
| BspACI | CCGC | 4 cut(s) | 246, 889, 979, 1140 |
| BspANI | GGCC | 4 cut(s) | 5, 579, 750, 1099 |
| BspCNI | CTCAG | 3 cut(s) | 845, 877, 1042 |
| BspDI | ATCGAT | 1 cut(s) | 786 |
| BspFNI | CGCG | 1 cut(s) | 59 |
| BspLI | GGNNCC | 4 cut(s) | 98, 531, 824, 1083 |
| BspMI | ACCTGC | 1 cut(s) | 992 |
| BspPI | GGATC | 3 cut(s) | 137, 1076, 1089 |
| BspT107I | GGYRCC | 3 cut(s) | 96, 529, 822 |
| BsrBI | CCGCTC | 1 cut(s) | 889 |
| BsrDI | GCAATG | 1 cut(s) | 742 |
| BsrFI | RCCGGY | 1 cut(s) | 918 |
| BsrGI | TGTACA | 1 cut(s) | 107 |
| BsrI | ACTGG | 3 cut(s) | 542, 983, 1100 |
| BssAI | RCCGGY | 1 cut(s) | 918 |
| BssECI | CCNNGG | 3 cut(s) | 10, 818, 1094 |
| BssMI | GATC | 2 cut(s) | 129, 1081 |
| BssNI | GRCGYC | 1 cut(s) | 15 |
| BssT1I | CCWWGG | 1 cut(s) | 1094 |
| Bst2UI | CCWGG | 1 cut(s) | 603 |
| Bst4CI | ACNGT | 6 cut(s) | 96, 151, 310, 347, 404, 944 |
| Bst6I | CTCTTC | 4 cut(s) | 244, 448, 714, 1111 |
| BstACI | GRCGYC | 1 cut(s) | 15 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1034 |
| BstAUI | TGTACA | 1 cut(s) | 107 |
| BstBAI | YACGTR | 1 cut(s) | 925 |
| BstC8I | GCNNGC | 5 cut(s) | 57, 192, 424, 474, 752 |
| BstDEI | CTNAG | 5 cut(s) | 715, 832, 854, 885, 1050 |
| BstF5I | GGATG | 3 cut(s) | 6, 171, 579 |
| BstFNI | CGCG | 1 cut(s) | 59 |
| BstHHI | GCGC | 1 cut(s) | 761 |
| BstKTI | GATC | 2 cut(s) | 132, 1084 |
| BstMAI | GTCTC | 1 cut(s) | 1108 |
| BstMBI | GATC | 2 cut(s) | 129, 1081 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 548, 641, 756, 1034 |
| BstNI | CCWGG | 1 cut(s) | 603 |
| BstNSI | RCATGY | 1 cut(s) | 430 |
| BstSCI | CCNGG | 2 cut(s) | 601, 1112 |
| BstSLI | GKGCMC | 1 cut(s) | 409 |
| BstUI | CGCG | 1 cut(s) | 59 |
| BstV1I | GCAGC | 4 cut(s) | 235, 538, 574, 577 |
| BstV2I | GAAGAC | 1 cut(s) | 829 |
| BstX2I | RGATCY | 1 cut(s) | 1081 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 297 |
| BstYI | RGATCY | 1 cut(s) | 1081 |
| Bsu15I | ATCGAT | 1 cut(s) | 786 |
| BsuRI | GGCC | 4 cut(s) | 5, 579, 750, 1099 |
| BsuTUI | ATCGAT | 1 cut(s) | 786 |
| BtsCI | GGATG | 3 cut(s) | 6, 171, 579 |
| BtsI | GCAGTG | 3 cut(s) | 642, 703, 1032 |
| BtsIMutI | CAGTG | 3 cut(s) | 642, 703, 1032 |
| BtuMI | TCGCGA | 1 cut(s) | 59 |
| BveI | ACCTGC | 1 cut(s) | 992 |
| Cac8I | GCNNGC | 5 cut(s) | 57, 192, 424, 474, 752 |
| CaiI | CAGNNNCTG | 2 cut(s) | 973, 1034 |
| CfoI | GCGC | 1 cut(s) | 761 |
| Cfr10I | RCCGGY | 1 cut(s) | 918 |
| Cfr13I | GGNCC | 3 cut(s) | 259, 577, 1010 |
| ClaI | ATCGAT | 1 cut(s) | 786 |
| CseI | GACGC | 1 cut(s) | 4 |
| Csp6I | GTAC | 7 cut(s) | 31, 97, 108, 318, 922, 990, 1054 |
| CspAI | ACCGGT | 1 cut(s) | 918 |
| CviAII | CATG | 3 cut(s) | 427, 728, 773 |
| CviQI | GTAC | 7 cut(s) | 31, 97, 108, 318, 922, 990, 1054 |
| DdeI | CTNAG | 5 cut(s) | 715, 832, 854, 885, 1050 |
| DpnI | GATC | 2 cut(s) | 131, 1083 |
| DpnII | GATC | 2 cut(s) | 129, 1081 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eam1104I | CTCTTC | 4 cut(s) | 244, 448, 714, 1111 |
| EarI | CTCTTC | 4 cut(s) | 244, 448, 714, 1111 |
| EciI | GGCGGA | 1 cut(s) | 968 |
| Eco130I | CCWWGG | 1 cut(s) | 1094 |
| Eco47I | GGWCC | 2 cut(s) | 259, 1010 |
| Eco57I | CTGAAG | 2 cut(s) | 375, 695 |
| Eco88I | CYCGRG | 1 cut(s) | 1077 |
| EcoRII | CCWGG | 1 cut(s) | 601 |
| EcoT14I | CCWWGG | 1 cut(s) | 1094 |
| EcoT22I | ATGCAT | 1 cut(s) | 785 |
| ErhI | CCWWGG | 1 cut(s) | 1094 |
| FaeI | CATG | 3 cut(s) | 430, 731, 776 |
| FatI | CATG | 3 cut(s) | 426, 727, 772 |
| FauNDI | CATATG | 1 cut(s) | 125 |
| FblI | GTMKAC | 1 cut(s) | 1073 |
| Fnu4HI | GCNGC | 4 cut(s) | 224, 552, 588, 591 |
| FokI | GGATG | 2 cut(s) | 178, 586 |
| Fsp4HI | GCNGC | 4 cut(s) | 224, 552, 588, 591 |
| GlaI | GCGC | 1 cut(s) | 760 |
| GluI | GCNGC | 4 cut(s) | 224, 552, 588, 591 |
| GsuI | CTGGAG | 1 cut(s) | 603 |
| HaeIII | GGCC | 4 cut(s) | 5, 579, 750, 1099 |
| HapII | CCGG | 2 cut(s) | 919, 1113 |
| HgaI | GACGC | 1 cut(s) | 4 |
| HhaI | GCGC | 1 cut(s) | 761 |
| Hin1I | GRCGYC | 1 cut(s) | 15 |
| Hin1II | CATG | 3 cut(s) | 430, 731, 776 |
| Hin6I | GCGC | 1 cut(s) | 759 |
| HinP1I | GCGC | 1 cut(s) | 759 |
| HincII | GTYRAC | 3 cut(s) | 447, 909, 1132 |
| HindII | GTYRAC | 3 cut(s) | 447, 909, 1132 |
| HinfI | GANTC | 5 cut(s) | 487, 523, 616, 881, 1133 |
| HpaII | CCGG | 2 cut(s) | 919, 1113 |
| Hpy166II | GTNNAC | 5 cut(s) | 407, 447, 909, 1074, 1132 |
| Hpy188I | TCNGA | 7 cut(s) | 11, 165, 366, 499, 671, 886, 948 |
| Hpy188III | TCNNGA | 8 cut(s) | 58, 198, 560, 653, 848, 878, 1040, 1079 |
| Hpy8I | GTNNAC | 5 cut(s) | 407, 447, 909, 1074, 1132 |
| Hpy99I | CGWCG | 1 cut(s) | 20 |
| HpyAV | CCTTC | 2 cut(s) | 334, 670 |
| HpyCH4III | ACNGT | 6 cut(s) | 96, 151, 310, 347, 404, 944 |
| HpyCH4IV | ACGT | 1 cut(s) | 924 |
| HpyCH4V | TGCA | 8 cut(s) | 80, 121, 407, 426, 593, 696, 783, 1001 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 548, 641, 756, 1034 |
| HpyF3I | CTNAG | 5 cut(s) | 715, 832, 854, 885, 1050 |
| HpySE526I | ACGT | 1 cut(s) | 924 |
| Hsp92I | GRCGYC | 1 cut(s) | 15 |
| Hsp92II | CATG | 3 cut(s) | 430, 731, 776 |
| HspAI | GCGC | 1 cut(s) | 759 |
| KpnI | GGTACC | 1 cut(s) | 100 |
| Kzo9I | GATC | 2 cut(s) | 129, 1081 |
| LmnI | GCTCC | 2 cut(s) | 655, 981 |
| Lsp1109I | GCAGC | 4 cut(s) | 235, 538, 574, 577 |
| LweI | GCATC | 2 cut(s) | 574, 792 |
| MaeII | ACGT | 1 cut(s) | 924 |
| MaeIII | GTNAC | 3 cut(s) | 387, 398, 963 |
| MalI | GATC | 2 cut(s) | 131, 1083 |
| MbiI | CCGCTC | 1 cut(s) | 889 |
| MboI | GATC | 2 cut(s) | 129, 1081 |
| MboII | GAAGA | 8 cut(s) | 34, 261, 368, 465, 731, 829, 863, 1098 |
| MflI | RGATCY | 1 cut(s) | 1081 |
| MhlI | GDGCHC | 2 cut(s) | 409, 478 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 5 cut(s) | 81, 85, 267, 312, 766 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MlyI | GAGTC | 2 cut(s) | 610, 1127 |
| MmeI | TCCRAC | 1 cut(s) | 710 |
| MnlI | CCTC | 8 cut(s) | 5, 205, 451, 563, 733, 828, 954, 1052 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| Mph1103I | ATGCAT | 1 cut(s) | 785 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 1 cut(s) | 84 |
| MslI | CAYNNNNRTG | 1 cut(s) | 149 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MspI | CCGG | 2 cut(s) | 919, 1113 |
| MspR9I | CCNGG | 2 cut(s) | 603, 1114 |
| Mva1269I | GAATGC | 1 cut(s) | 785 |
| MvaI | CCWGG | 1 cut(s) | 603 |
| MvnI | CGCG | 1 cut(s) | 59 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 548, 641, 756, 1034 |
| NciI | CCSGG | 1 cut(s) | 1114 |
| NdeI | CATATG | 1 cut(s) | 125 |
| NdeII | GATC | 2 cut(s) | 129, 1081 |
| NlaIII | CATG | 3 cut(s) | 430, 731, 776 |
| NlaIV | GGNNCC | 4 cut(s) | 98, 531, 824, 1083 |
| NruI | TCGCGA | 1 cut(s) | 59 |
| NsiI | ATGCAT | 1 cut(s) | 785 |
| NspI | RCATGY | 1 cut(s) | 430 |
| OliI | CACNNNNGTG | 1 cut(s) | 149 |
| PaqCI | CACCTGC | 1 cut(s) | 992 |
| PctI | GAATGC | 1 cut(s) | 785 |
| PfeI | GAWTC | 3 cut(s) | 487, 523, 881 |
| PinAI | ACCGGT | 1 cut(s) | 918 |
| PkrI | GCNGC | 4 cut(s) | 225, 553, 589, 592 |
| PleI | GAGTC | 2 cut(s) | 610, 1127 |
| PpsI | GAGTC | 2 cut(s) | 610, 1127 |
| Ppu21I | YACGTR | 1 cut(s) | 925 |
| PshBI | ATTAAT | 1 cut(s) | 84 |
| Psp6I | CCWGG | 1 cut(s) | 601 |
| PspGI | CCWGG | 1 cut(s) | 601 |
| PspN4I | GGNNCC | 4 cut(s) | 98, 531, 824, 1083 |
| PspPI | GGNCC | 3 cut(s) | 259, 577, 1010 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 23, 55 |
| PstNI | CAGNNNCTG | 2 cut(s) | 973, 1034 |
| PsuI | RGATCY | 1 cut(s) | 1081 |
| RruI | TCGCGA | 1 cut(s) | 59 |
| RsaI | GTAC | 7 cut(s) | 32, 98, 109, 319, 923, 991, 1055 |
| RsaNI | GTAC | 7 cut(s) | 31, 97, 108, 318, 922, 990, 1054 |
| RseI | CAYNNNNRTG | 1 cut(s) | 149 |
| SaqAI | TTAA | 1 cut(s) | 84 |
| SatI | GCNGC | 4 cut(s) | 224, 552, 588, 591 |
| Sau3AI | GATC | 2 cut(s) | 129, 1081 |
| Sau96I | GGNCC | 3 cut(s) | 259, 577, 1010 |
| SchI | GAGTC | 2 cut(s) | 610, 1127 |
| ScrFI | CCNGG | 2 cut(s) | 603, 1114 |
| SduI | GDGCHC | 2 cut(s) | 409, 478 |
| SfaNI | GCATC | 2 cut(s) | 574, 792 |
| SinI | GGWCC | 2 cut(s) | 259, 1010 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 149 |
| Sse9I | AATT | 5 cut(s) | 81, 85, 267, 312, 766 |
| SsiI | CCGC | 4 cut(s) | 246, 889, 979, 1140 |
| StyD4I | CCNGG | 2 cut(s) | 601, 1112 |
| StyI | CCWWGG | 1 cut(s) | 1094 |
| TaaI | ACNGT | 6 cut(s) | 96, 151, 310, 347, 404, 944 |
| TaiI | ACGT | 1 cut(s) | 927 |
| TaqI | TCGA | 6 cut(s) | 18, 338, 431, 786, 799, 849 |
| TasI | AATT | 5 cut(s) | 81, 85, 267, 312, 766 |
| TatI | WGTACW | 1 cut(s) | 107 |
| TfiI | GAWTC | 3 cut(s) | 487, 523, 881 |
| Tru1I | TTAA | 1 cut(s) | 84 |
| Tru9I | TTAA | 1 cut(s) | 84 |
| TscAI | CASTG | 3 cut(s) | 642, 703, 1039 |
| TseI | GCWGC | 4 cut(s) | 223, 551, 587, 590 |
| TspGWI | ACGGA | 2 cut(s) | 1007, 1071 |
| TspRI | CASTG | 3 cut(s) | 642, 703, 1039 |
| VneI | GTGCAC | 1 cut(s) | 405 |
| VpaK11BI | GGWCC | 2 cut(s) | 259, 1010 |
| VspI | ATTAAT | 1 cut(s) | 84 |
| XceI | RCATGY | 1 cut(s) | 430 |
| XmiI | GTMKAC | 1 cut(s) | 1073 |
| Zsp2I | ATGCAT | 1 cut(s) | 785 |