pycom06g15630

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Reverse (-)
20132506 .. 20135423
2918 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g15630.7

Sequence Viewer

Length: 1116 bp
ATGGCCATCCGAGGCGTCGATTTCAAGTGGTACGATGGGTTCTTCTTGTCGATGCTCGCGACGAGCGTAGTGATTGTTGGAATTAATTGGAAGCGGTACCATACTTGTGCATACCCGTTGCACATATGGATCGTGGTTGATTACACTACTGTGTTTGTTTTTCGGATGTTGATGGATTTTGGGTGGCAGCAAAGATATGCTCGTTTCTGCGGAAGAGTAGTGGTCCTTTCAATTCTTTCTCTGCTGCTTTATCCATTTCTTTGGACTTGGACACTGCTTGGTACACTGTGGTTTCACAAATCGAAGGACTGTTTGCCTGAAAGTGGTCAGAAGTGGGGTTTTCTCATTTGGTTACTTTTTAGCTACAGTGCTCTACTTTGCATTGCTTGCATGTCAATTGGGAAGTGGTTGACACGAAGGGAGGCACACTTACTGCGAGCTCAGCAAGGGATTCCTGTGTCAGAATTTGGGGTTTTGGTTGATATGATTCGGGTGCCAGATTGGGCATTTGAAGCTGCCGGTCAAGAAACAAGAGGGATGGGCCAAGATGCTGCTGCATTCCAACCTGGACTTTACTTGACTCAAGCACAGAGAGAAGCAGTTGAAGCACTCATTCAGGAGCTTCCAAAGTTCAGACTGAAGGCTGTTCCAACTGATTGCAGCGAATGTCCAATCTGCTTGGAAGAGTTTCATGTAGGCAATGAGGTTCGCGGCCTGCCTTGTGCTCACAATTTCCATGTAGAATGCATCGATGAGTGGCTTCGACTGAATGTGAAATGTCCCAGATGCCGTTGCTCAGTCTTCCCAAATCTCGACCTCAGTGCTATATCCAATCTCCGTCCTGACTCTGAGCGTTCACCTCTCAGTGTGTTGACAACCAACCGGTATGTGAGAACCCAACCTGATAGTCAGAGGCATTTGTTGAGGTTGCAGGGAGCATTCCGCCCAGTCCGTACAGAAAATGCAGGTGCAGGCAATGAGGCAGACGCTGCTTCGGAAACTGCTGAGGAAGGGGGTATTGCTCATTCATCTACTCGGGATCTTTCAAGCCCAGGGGCGGGACCTTCCATTGAACATATCGTCGTGGTCGAATCCGCCTCCCGGCAACAACAATAG

Protein Analysis

372

Amino Acids

41.97

Weight (kDa)

6.79

Isoelectric Point (pI)

44.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012512)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 956
Acc36I ACCTGC 1 cut(s) 956
Acc65I GGTACC 1 cut(s) 96
AccB1I GGYRCC 2 cut(s) 96, 493
AccII CGCG 2 cut(s) 59, 711
AciI CCGC 6 cut(s) 94, 210, 711, 943, 1058, 1095
AclWI GGATC 2 cut(s) 137, 1047
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 464
AcuI CTGAAG 1 cut(s) 659
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 4 cut(s) 32, 98, 283, 955
AfiI CCNNNNNNNGG 4 cut(s) 323, 1057, 1058, 1101
AgeI ACCGGT 1 cut(s) 882
AgsI TTSAA 6 cut(s) 25, 231, 512, 605, 1047, 1073
AjnI CCWGG 2 cut(s) 565, 1051
AleI CACNNNNGTG 1 cut(s) 149
AluBI AGCT 4 cut(s) 363, 440, 515, 622
AluI AGCT 4 cut(s) 363, 440, 515, 622
Alw21I GWGCWC 3 cut(s) 373, 442, 727
AlwI GGATC 2 cut(s) 137, 1047
AlwNI CAGNNNCTG 1 cut(s) 989
Ama87I CYCGRG 1 cut(s) 1035
AoxI GGCC 3 cut(s) 3, 541, 712
ApeKI GCWGC 7 cut(s) 187, 244, 515, 551, 554, 660, 989
ApoI RAATTY 1 cut(s) 464
AseI ATTAAT 1 cut(s) 84
AsiGI ACCGGT 1 cut(s) 882
Asp700I GAANNNNTTC 1 cut(s) 687
Asp718I GGTACC 1 cut(s) 96
AspS9I GGNCC 3 cut(s) 223, 541, 1061
AsuC2I CCSGG 1 cut(s) 1102
AsuHPI GGTGA 1 cut(s) 849
AvaI CYCGRG 1 cut(s) 1035
AvaII GGWCC 2 cut(s) 223, 1061
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 96, 493
BanII GRGCYC 1 cut(s) 442
BbsI GAAGAC 1 cut(s) 793
Bbv12I GWGCWC 3 cut(s) 373, 442, 727
BbvCI CCTCAGC 1 cut(s) 1005
BbvI GCAGC 7 cut(s) 199, 231, 502, 538, 541, 672, 976
BccI CCATC 4 cut(s) 14, 29, 166, 532
BceAI ACGGC 1 cut(s) 774
BcgI CGANNNNNNTGC 2 cut(s) 803, 837
BciT130I CCWGG 2 cut(s) 567, 1053
BcnI CCSGG 1 cut(s) 1102
BfmI CTRYAG 1 cut(s) 364
BfuAI ACCTGC 1 cut(s) 956
BisI GCNGC 8 cut(s) 188, 245, 516, 552, 555, 661, 712, 990
BlpI GCTNAGC 1 cut(s) 441
BlsI GCNGC 8 cut(s) 189, 246, 517, 553, 556, 662, 713, 991
Bme1390I CCNGG 3 cut(s) 567, 1053, 1102
Bme18I GGWCC 2 cut(s) 223, 1061
BmeT110I CYCGRG 1 cut(s) 1035
BmgT120I GGNCC 3 cut(s) 223, 541, 1061
BmiI GGNNCC 3 cut(s) 98, 495, 1062
BmrFI CCNGG 3 cut(s) 567, 1053, 1102
BmrI ACTGGG 1 cut(s) 941
BmsI GCATC 4 cut(s) 42, 538, 756, 776
BmuI ACTGGG 1 cut(s) 941
BpiI GAAGAC 1 cut(s) 793
Bpu10I CCTNAGC 1 cut(s) 1005
Bpu1102I GCTNAGC 1 cut(s) 441
BpuEI CTTGAG 1 cut(s) 567
BpuMI CCSGG 1 cut(s) 1102
Bsa29I ATCGAT 1 cut(s) 750
BsaHI GRCGYC 1 cut(s) 15
BsaJI CCNNGG 3 cut(s) 10, 1051, 1052
BsaWI WCCGGW 1 cut(s) 882
Bsc4I CCNNNNNNNGG 4 cut(s) 323, 1057, 1058, 1101
Bse118I RCCGGY 2 cut(s) 518, 882
Bse1I ACTGG 1 cut(s) 947
Bse3DI GCAATG 3 cut(s) 381, 706, 982
BseBI CCWGG 2 cut(s) 567, 1053
BseCI ATCGAT 1 cut(s) 750
BseDI CCNNGG 3 cut(s) 10, 1051, 1052
BseGI GGATG 3 cut(s) 6, 171, 543
BseLI CCNNNNNNNGG 4 cut(s) 323, 1057, 1058, 1101
BseMI GCAATG 3 cut(s) 381, 706, 982
BseMII CTCAG 6 cut(s) 455, 810, 832, 840, 877, 996
BseNI ACTGG 1 cut(s) 947
BseXI GCAGC 7 cut(s) 199, 231, 502, 538, 541, 672, 976
BsgI GTGCAG 1 cut(s) 990
Bsh1236I CGCG 2 cut(s) 59, 711
BshFI GGCC 3 cut(s) 5, 543, 714
BshNI GGYRCC 2 cut(s) 96, 493
BshTI ACCGGT 1 cut(s) 882
BshVI ATCGAT 1 cut(s) 750
BsiHKAI GWGCWC 3 cut(s) 373, 442, 727
BsiHKCI CYCGRG 1 cut(s) 1035
BsiSI CCGG 3 cut(s) 519, 883, 1102
BslFI GGGAC 2 cut(s) 765, 1074
BslI CCNNNNNNNGG 4 cut(s) 323, 1057, 1058, 1101
BsmFI GGGAC 2 cut(s) 765, 1074
BsmI GAATGC 3 cut(s) 557, 749, 938
BsnI GGCC 3 cut(s) 5, 543, 714
BsoBI CYCGRG 1 cut(s) 1035
Bsp1286I GDGCHC 3 cut(s) 373, 442, 727
Bsp143I GATC 2 cut(s) 129, 1039
Bsp1720I GCTNAGC 1 cut(s) 441
Bsp68I TCGCGA 1 cut(s) 59
BspACI CCGC 6 cut(s) 94, 210, 711, 943, 1058, 1095
BspANI GGCC 3 cut(s) 5, 543, 714
BspCNI CTCAG 6 cut(s) 454, 809, 831, 841, 876, 997
BspDI ATCGAT 1 cut(s) 750
BspFNI CGCG 2 cut(s) 59, 711
BspLI GGNNCC 3 cut(s) 98, 495, 1062
BspMI ACCTGC 1 cut(s) 956
BspPI GGATC 2 cut(s) 137, 1047
BspT107I GGYRCC 2 cut(s) 96, 493
BsrDI GCAATG 3 cut(s) 381, 706, 982
BsrFI RCCGGY 2 cut(s) 518, 882
BsrI ACTGG 1 cut(s) 947
BssAI RCCGGY 2 cut(s) 518, 882
BssECI CCNNGG 3 cut(s) 10, 1051, 1052
BssMI GATC 2 cut(s) 129, 1039
BssNI GRCGYC 1 cut(s) 15
Bst2UI CCWGG 2 cut(s) 567, 1053
Bst4CI ACNGT 4 cut(s) 151, 288, 311, 368
Bst6I CTCTTC 2 cut(s) 208, 678
BstACI GRCGYC 1 cut(s) 15
BstAPI GCANNNNNTGC 2 cut(s) 387, 989
BstC8I GCNNGC 5 cut(s) 57, 388, 438, 716, 973
BstDEI CTNAG 6 cut(s) 441, 796, 818, 849, 863, 1005
BstF5I GGATG 3 cut(s) 6, 171, 543
BstFNI CGCG 2 cut(s) 59, 711
BstKTI GATC 2 cut(s) 132, 1042
BstMBI GATC 2 cut(s) 129, 1039
BstMWI GCNNNNNNNGC 5 cut(s) 387, 442, 512, 605, 989
BstNI CCWGG 2 cut(s) 567, 1053
BstNSI RCATGY 1 cut(s) 394
BstSCI CCNGG 3 cut(s) 565, 1051, 1100
BstSFI CTRYAG 1 cut(s) 364
BstUI CGCG 2 cut(s) 59, 711
BstV1I GCAGC 7 cut(s) 199, 231, 502, 538, 541, 672, 976
BstV2I GAAGAC 1 cut(s) 793
BstX2I RGATCY 1 cut(s) 1039
BstXI CCANNNNNNTGG 1 cut(s) 261
BstYI RGATCY 1 cut(s) 1039
Bsu15I ATCGAT 1 cut(s) 750
BsuRI GGCC 3 cut(s) 5, 543, 714
BsuTUI ATCGAT 1 cut(s) 750
BtsCI GGATG 3 cut(s) 6, 171, 543
BtsI GCAGTG 1 cut(s) 272
BtsIMutI CAGTG 5 cut(s) 272, 284, 373, 826, 871
BtuMI TCGCGA 1 cut(s) 59
BveI ACCTGC 1 cut(s) 956
Cac8I GCNNGC 5 cut(s) 57, 388, 438, 716, 973
CaiI CAGNNNCTG 1 cut(s) 989
Cfr10I RCCGGY 2 cut(s) 518, 882
Cfr13I GGNCC 3 cut(s) 223, 541, 1061
ClaI ATCGAT 1 cut(s) 750
CseI GACGC 2 cut(s) 4, 995
Csp6I GTAC 4 cut(s) 31, 97, 282, 954
CspAI ACCGGT 1 cut(s) 882
CviAII CATG 3 cut(s) 391, 692, 737
CviQI GTAC 4 cut(s) 31, 97, 282, 954
DdeI CTNAG 6 cut(s) 441, 796, 818, 849, 863, 1005
DpnI GATC 2 cut(s) 131, 1041
DpnII GATC 2 cut(s) 129, 1039
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 208, 678
EarI CTCTTC 2 cut(s) 208, 678
EciI GGCGGA 2 cut(s) 932, 1084
Ecl136II GAGCTC 1 cut(s) 440
Eco24I GRGCYC 1 cut(s) 442
Eco47I GGWCC 2 cut(s) 223, 1061
Eco53kI GAGCTC 1 cut(s) 440
Eco57I CTGAAG 1 cut(s) 659
Eco88I CYCGRG 1 cut(s) 1035
EcoICRI GAGCTC 1 cut(s) 440
EcoO109I RGGNCCY 1 cut(s) 1061
EcoRII CCWGG 2 cut(s) 565, 1051
EcoT22I ATGCAT 1 cut(s) 749
EcoT38I GRGCYC 1 cut(s) 442
FaeI CATG 3 cut(s) 394, 695, 740
FaqI GGGAC 2 cut(s) 765, 1074
FatI CATG 3 cut(s) 390, 691, 736
FauI CCCGC 1 cut(s) 1051
FauNDI CATATG 1 cut(s) 125
Fnu4HI GCNGC 8 cut(s) 188, 245, 516, 552, 555, 661, 712, 990
FokI GGATG 2 cut(s) 178, 550
FriOI GRGCYC 1 cut(s) 442
Fsp4HI GCNGC 8 cut(s) 188, 245, 516, 552, 555, 661, 712, 990
GluI GCNGC 8 cut(s) 188, 245, 516, 552, 555, 661, 712, 990
HaeIII GGCC 3 cut(s) 5, 543, 714
HapII CCGG 3 cut(s) 519, 883, 1102
HgaI GACGC 2 cut(s) 4, 995
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 3 cut(s) 394, 695, 740
HincII GTYRAC 2 cut(s) 411, 873
HindII GTYRAC 2 cut(s) 411, 873
HinfI GANTC 5 cut(s) 451, 487, 580, 845, 1091
HpaII CCGG 3 cut(s) 519, 883, 1102
HphI GGTGA 1 cut(s) 849
Hpy166II GTNNAC 4 cut(s) 284, 411, 857, 873
Hpy188I TCNGA 8 cut(s) 11, 165, 330, 463, 635, 850, 912, 997
Hpy188III TCNNGA 6 cut(s) 58, 524, 617, 812, 842, 1037
Hpy8I GTNNAC 4 cut(s) 284, 411, 857, 873
Hpy99I CGWCG 3 cut(s) 20, 64, 1085
HpyAV CCTTC 5 cut(s) 298, 411, 634, 1004, 1074
HpyCH4III ACNGT 4 cut(s) 151, 288, 311, 368
HpyF10VI GCNNNNNNNGC 5 cut(s) 387, 442, 512, 605, 989
HpyF3I CTNAG 6 cut(s) 441, 796, 818, 849, 863, 1005
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 3 cut(s) 394, 695, 740
KpnI GGTACC 1 cut(s) 100
Kzo9I GATC 2 cut(s) 129, 1039
LmnI GCTCC 2 cut(s) 619, 935
Lsp1109I GCAGC 7 cut(s) 199, 231, 502, 538, 541, 672, 976
LweI GCATC 4 cut(s) 42, 538, 756, 776
MaeIII GTNAC 1 cut(s) 351
MalI GATC 2 cut(s) 131, 1041
MboI GATC 2 cut(s) 129, 1039
MboII GAAGA 4 cut(s) 34, 225, 695, 793
MfeI CAATTG 1 cut(s) 396
MflI RGATCY 1 cut(s) 1039
MhlI GDGCHC 3 cut(s) 373, 442, 727
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 6 cut(s) 81, 85, 231, 396, 464, 730
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 574, 839
MmeI TCCRAC 3 cut(s) 58, 586, 674
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 749
MroXI GAANNNNTTC 1 cut(s) 687
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 84
MslI CAYNNNNRTG 2 cut(s) 105, 149
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 3 cut(s) 519, 883, 1102
MspR9I CCNGG 3 cut(s) 567, 1053, 1102
MunI CAATTG 1 cut(s) 396
Mva1269I GAATGC 3 cut(s) 557, 749, 938
MvaI CCWGG 2 cut(s) 567, 1053
MvnI CGCG 2 cut(s) 59, 711
MwoI GCNNNNNNNGC 5 cut(s) 387, 442, 512, 605, 989
NciI CCSGG 1 cut(s) 1102
NdeI CATATG 1 cut(s) 125
NdeII GATC 2 cut(s) 129, 1039
NlaIII CATG 3 cut(s) 394, 695, 740
NlaIV GGNNCC 3 cut(s) 98, 495, 1062
NruI TCGCGA 1 cut(s) 59
NsiI ATGCAT 1 cut(s) 749
NspI RCATGY 1 cut(s) 394
OliI CACNNNNGTG 1 cut(s) 149
PaqCI CACCTGC 1 cut(s) 956
PasI CCCWGGG 1 cut(s) 1052
PcsI WCGNNNNNNNCGW 3 cut(s) 56, 63, 1086
PctI GAATGC 3 cut(s) 557, 749, 938
PdmI GAANNNNTTC 1 cut(s) 687
PfeI GAWTC 3 cut(s) 451, 487, 1091
PinAI ACCGGT 1 cut(s) 882
PkrI GCNGC 8 cut(s) 189, 246, 517, 553, 556, 662, 713, 991
PleI GAGTC 2 cut(s) 574, 839
PpsI GAGTC 2 cut(s) 574, 839
PpuMI RGGWCCY 1 cut(s) 1061
PshBI ATTAAT 1 cut(s) 84
Psp124BI GAGCTC 1 cut(s) 442
Psp5II RGGWCCY 1 cut(s) 1061
Psp6I CCWGG 2 cut(s) 565, 1051
PspGI CCWGG 2 cut(s) 565, 1051
PspN4I GGNNCC 3 cut(s) 98, 495, 1062
PspPI GGNCC 3 cut(s) 223, 541, 1061
PspPPI RGGWCCY 1 cut(s) 1061
PsrI GAACNNNNNNTAC 2 cut(s) 23, 55
PstNI CAGNNNCTG 1 cut(s) 989
PsuI RGATCY 1 cut(s) 1039
RruI TCGCGA 1 cut(s) 59
RsaI GTAC 4 cut(s) 32, 98, 283, 955
RsaNI GTAC 4 cut(s) 31, 97, 282, 954
RseI CAYNNNNRTG 2 cut(s) 105, 149
SacI GAGCTC 1 cut(s) 442
SaqAI TTAA 1 cut(s) 84
SatI GCNGC 8 cut(s) 188, 245, 516, 552, 555, 661, 712, 990
Sau3AI GATC 2 cut(s) 129, 1039
Sau96I GGNCC 3 cut(s) 223, 541, 1061
SchI GAGTC 2 cut(s) 574, 839
ScrFI CCNGG 3 cut(s) 567, 1053, 1102
SduI GDGCHC 3 cut(s) 373, 442, 727
SfaNI GCATC 4 cut(s) 42, 538, 756, 776
SfcI CTRYAG 1 cut(s) 364
SinI GGWCC 2 cut(s) 223, 1061
SmiMI CAYNNNNRTG 2 cut(s) 105, 149
SmlI CTYRAG 1 cut(s) 582
SmoI CTYRAG 1 cut(s) 582
Sse9I AATT 6 cut(s) 81, 85, 231, 396, 464, 730
SsiI CCGC 6 cut(s) 94, 210, 711, 943, 1058, 1095
SstI GAGCTC 1 cut(s) 442
StyD4I CCNGG 3 cut(s) 565, 1051, 1100
TaaI ACNGT 4 cut(s) 151, 288, 311, 368
TaqI TCGA 7 cut(s) 18, 50, 302, 750, 763, 813, 1089
TasI AATT 6 cut(s) 81, 85, 231, 396, 464, 730
TauI GCSGC 1 cut(s) 714
TfiI GAWTC 3 cut(s) 451, 487, 1091
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TscAI CASTG 5 cut(s) 279, 291, 373, 826, 871
TseI GCWGC 7 cut(s) 187, 244, 515, 551, 554, 660, 989
TspDTI ATGAA 2 cut(s) 680, 1017
TspGWI ACGGA 2 cut(s) 827, 941
TspRI CASTG 5 cut(s) 279, 291, 373, 826, 871
VpaK11BI GGWCC 2 cut(s) 223, 1061
VspI ATTAAT 1 cut(s) 84
XapI RAATTY 1 cut(s) 464
XceI RCATGY 1 cut(s) 394
XmnI GAANNNNTTC 1 cut(s) 687
Zsp2I ATGCAT 1 cut(s) 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.