Rh7AG138200

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Reverse (-)
11068349 .. 11071562
3214 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG138200.1

Sequence Viewer

Length: 1101 bp
ATGGCCATCAGAGGCGTCGATTTCAAGTGGTACGATGGATTCTTCTTGTCCATGCTCGCGACCAGTGTAGTAATTGTTGCGATTAAATGGAAGCGGTACCATACTTGTACATATCCGTTGCATATATGGATTGTGGTTGATTACACTACAGTGTTTGTATTTCGCTTGTTGATGTTTGTTGATAATGGGCTGGCAGCTGGAATGGGTTTGGATTTTGGGTGGCAGCAAAGATATGCTCGTTTCTGTGGGAGAGTAGTGGTTCTTTCAATTCTTTCTCTGCTACTCTATCCATTTCTTTGGGCTTGGACAGTCATTGGGACTCTGTGGTTTAGAAGCTCGAAGGACTGTTTGCCTGAAGATGGACAGAAATGGGGCTTTCTTATTTGGTTGCTTTTTAGTTACTGTGCACTACTTTGCATTTCGTGCATGTCACTTGGGAAGTGGTTGACACGAAGACAGGCACACTTAGTGCGTGCTCAACAAGGGATTCCTGTATCAGAGTATGGGGTTTTGGTTGATATGATCCGGGTGCCAGATTGGGCATTTGAAGCTGCAGGTCAAGAGGCAAGAGGAATGGGTCAAGAAGCTGCATACCAACCTGGACTTTACTTGACAACAGCACAGAGAGAAGCAGTGGAGGCACTCATTCAGGAGCTTCCAAAGTTCAGGTTGAAGGCTGTTCCAACTGATTGCAGTGAATGTCCAATCTGCTTAGAAGAGTTCTATGAAGGCAATGAGGTCCGCGGCCTACCTTGCGCTCACAATTTCCATGTAGAATGCATCGATGAGTGGCTTCGATTGAATGTGAAATGTCCTCGGTGCCGTTGCTCAGTCTTTCCGAATCTCGACCTCAGTGCTATTTCCACTCTCCGAGCTGAGTCTGAACGGTCATCTGTCATGTTGACTGCTAACCGGTATGTGAGAACCCAACCATCAAGTCAGAGCTATCTGCTGAGATTGCAGGGTTTGCTCCACCCAGTCCATACAGAAACTGCAAGCAATGGGGCGGACACTGCTGAGAATGGGGGTGTTGCCATGTCTAGCCGGGATCCATCAAGCCCAGGACAGGTCCCTTCTGTTGGACATGTTAATAGTTGTTGA

Protein Analysis

366

Amino Acids

41.28

Weight (kDa)

7.04

Isoelectric Point (pI)

45.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 233 - 275 1.2e-14 Ring finger domain
zf-RING_11 PF17123 233 - 261 3.8e-10 RING-like zinc finger
zf-C3HC4_2 PF13923 233 - 274 4.8e-10 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 234 - 274 5e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 234 - 272 6.9e-08 RING-type zinc-finger
zf-rbx1 PF12678 234 - 275 1.7e-06 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012512)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 545
Acc65I GGTACC 1 cut(s) 96
AccB1I GGYRCC 3 cut(s) 96, 529, 819
AccII CGCG 2 cut(s) 59, 744
AciI CCGC 4 cut(s) 94, 742, 744, 1007
AclWI GGATC 3 cut(s) 517, 1043, 1056
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 375
AcyI GRCGYC 1 cut(s) 15
AdeI CACNNNGTG 1 cut(s) 469
AfaI GTAC 3 cut(s) 32, 98, 109
AfiI CCNNNNNNNGG 3 cut(s) 359, 1066, 1079
AflIII ACRYGT 1 cut(s) 1084
AgeI ACCGGT 1 cut(s) 912
AgsI TTSAA 5 cut(s) 25, 267, 548, 673, 802
AjnI CCWGG 2 cut(s) 598, 1060
AleI CACNNNNGTG 1 cut(s) 149
AluBI AGCT 7 cut(s) 197, 336, 551, 587, 655, 875, 945
AluI AGCT 7 cut(s) 197, 336, 551, 587, 655, 875, 945
Alw21I GWGCWC 2 cut(s) 409, 478
Alw44I GTGCAC 1 cut(s) 405
AlwI GGATC 3 cut(s) 517, 1043, 1056
AlwNI CAGNNNCTG 1 cut(s) 992
AoxI GGCC 2 cut(s) 3, 745
ApaLI GTGCAC 1 cut(s) 405
ApeKI GCWGC 4 cut(s) 194, 223, 551, 587
AsiGI ACCGGT 1 cut(s) 912
Asp718I GGTACC 1 cut(s) 96
AspLEI GCGC 1 cut(s) 758
AspS9I GGNCC 2 cut(s) 739, 1069
AsuC2I CCSGG 2 cut(s) 527, 1046
AvaII GGWCC 2 cut(s) 739, 1069
BaeGI GKGCMC 1 cut(s) 409
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 1048
BanI GGYRCC 3 cut(s) 96, 529, 819
BbsI GAAGAC 1 cut(s) 460
Bbv12I GWGCWC 2 cut(s) 409, 478
BbvI GCAGC 4 cut(s) 206, 235, 538, 574
BccI CCATC 5 cut(s) 14, 29, 353, 940, 1060
BceAI ACGGC 1 cut(s) 807
BcgI CGANNNNNNTGC 2 cut(s) 836, 870
BciT130I CCWGG 2 cut(s) 600, 1062
BcnI CCSGG 2 cut(s) 527, 1046
BfaI CTAG 1 cut(s) 1041
BfmI CTRYAG 2 cut(s) 147, 552
BfuAI ACCTGC 1 cut(s) 545
BisI GCNGC 5 cut(s) 195, 224, 552, 588, 745
BlsI GCNGC 5 cut(s) 196, 225, 553, 589, 746
Bme1390I CCNGG 4 cut(s) 527, 600, 1046, 1062
Bme18I GGWCC 2 cut(s) 739, 1069
BmgT120I GGNCC 2 cut(s) 739, 1069
BmiI GGNNCC 5 cut(s) 98, 531, 821, 1050, 1071
BmrFI CCNGG 4 cut(s) 527, 600, 1046, 1062
BmrI ACTGGG 1 cut(s) 971
BmsI GCATC 1 cut(s) 789
BmuI ACTGGG 1 cut(s) 971
BpiI GAAGAC 1 cut(s) 460
BpuMI CCSGG 2 cut(s) 527, 1046
Bsa29I ATCGAT 1 cut(s) 783
BsaHI GRCGYC 1 cut(s) 15
BsaJI CCNNGG 3 cut(s) 742, 815, 1060
BsaWI WCCGGW 1 cut(s) 912
Bsc4I CCNNNNNNNGG 3 cut(s) 359, 1066, 1079
Bse118I RCCGGY 1 cut(s) 912
Bse1I ACTGG 2 cut(s) 63, 977
Bse3DI GCAATG 2 cut(s) 739, 1006
BseBI CCWGG 2 cut(s) 600, 1062
BseCI ATCGAT 1 cut(s) 783
BseDI CCNNGG 3 cut(s) 742, 815, 1060
BseLI CCNNNNNNNGG 3 cut(s) 359, 1066, 1079
BseMI GCAATG 2 cut(s) 739, 1006
BseMII CTCAG 5 cut(s) 843, 865, 867, 944, 1008
BseNI ACTGG 2 cut(s) 63, 977
BseSI GKGCMC 1 cut(s) 409
BseXI GCAGC 4 cut(s) 206, 235, 538, 574
Bsh1236I CGCG 2 cut(s) 59, 744
BshFI GGCC 2 cut(s) 5, 747
BshNI GGYRCC 3 cut(s) 96, 529, 819
BshTI ACCGGT 1 cut(s) 912
BshVI ATCGAT 1 cut(s) 783
BsiHKAI GWGCWC 2 cut(s) 409, 478
BsiSI CCGG 3 cut(s) 526, 913, 1045
BslFI GGGAC 2 cut(s) 331, 1055
BslI CCNNNNNNNGG 3 cut(s) 359, 1066, 1079
BsmFI GGGAC 2 cut(s) 331, 1055
BsmI GAATGC 1 cut(s) 782
BsnI GGCC 2 cut(s) 5, 747
Bsp1286I GDGCHC 2 cut(s) 409, 478
Bsp1407I TGTACA 1 cut(s) 107
Bsp143I GATC 2 cut(s) 522, 1048
Bsp68I TCGCGA 1 cut(s) 59
BspACI CCGC 4 cut(s) 94, 742, 744, 1007
BspANI GGCC 2 cut(s) 5, 747
BspCNI CTCAG 5 cut(s) 842, 864, 868, 945, 1009
BspDI ATCGAT 1 cut(s) 783
BspFNI CGCG 2 cut(s) 59, 744
BspLI GGNNCC 5 cut(s) 98, 531, 821, 1050, 1071
BspMAI CTGCAG 1 cut(s) 556
BspMI ACCTGC 1 cut(s) 545
BspPI GGATC 3 cut(s) 517, 1043, 1056
BspT107I GGYRCC 3 cut(s) 96, 529, 819
BsrDI GCAATG 2 cut(s) 739, 1006
BsrFI RCCGGY 1 cut(s) 912
BsrGI TGTACA 1 cut(s) 107
BsrI ACTGG 2 cut(s) 63, 977
BssAI RCCGGY 1 cut(s) 912
BssECI CCNNGG 3 cut(s) 742, 815, 1060
BssMI GATC 2 cut(s) 522, 1048
BssNI GRCGYC 1 cut(s) 15
Bst2UI CCWGG 2 cut(s) 600, 1062
Bst4CI ACNGT 5 cut(s) 151, 310, 347, 404, 888
Bst6I CTCTTC 1 cut(s) 711
BstACI GRCGYC 1 cut(s) 15
BstAPI GCANNNNNTGC 2 cut(s) 423, 967
BstAUI TGTACA 1 cut(s) 107
BstC8I GCNNGC 4 cut(s) 57, 192, 474, 997
BstDEI CTNAG 7 cut(s) 466, 712, 829, 851, 876, 953, 1017
BstDSI CCRYGG 1 cut(s) 742
BstFNI CGCG 2 cut(s) 59, 744
BstHHI GCGC 1 cut(s) 758
BstKTI GATC 2 cut(s) 525, 1051
BstMBI GATC 2 cut(s) 522, 1048
BstMWI GCNNNNNNNGC 7 cut(s) 423, 548, 638, 753, 958, 967, 1013
BstNI CCWGG 2 cut(s) 600, 1062
BstNSI RCATGY 2 cut(s) 430, 1088
BstSCI CCNGG 4 cut(s) 525, 598, 1044, 1060
BstSFI CTRYAG 2 cut(s) 147, 552
BstSLI GKGCMC 1 cut(s) 409
BstUI CGCG 2 cut(s) 59, 744
BstV1I GCAGC 4 cut(s) 206, 235, 538, 574
BstV2I GAAGAC 1 cut(s) 460
BstX2I RGATCY 1 cut(s) 1048
BstXI CCANNNNNNTGG 1 cut(s) 297
BstYI RGATCY 1 cut(s) 1048
Bsu15I ATCGAT 1 cut(s) 783
BsuRI GGCC 2 cut(s) 5, 747
BsuTUI ATCGAT 1 cut(s) 783
BtgI CCRYGG 1 cut(s) 742
BtsI GCAGTG 3 cut(s) 639, 700, 1011
BtsIMutI CAGTG 6 cut(s) 70, 156, 639, 700, 859, 1011
BtuMI TCGCGA 1 cut(s) 59
BveI ACCTGC 1 cut(s) 545
Cac8I GCNNGC 4 cut(s) 57, 192, 474, 997
CaiI CAGNNNCTG 1 cut(s) 992
CfoI GCGC 1 cut(s) 758
Cfr10I RCCGGY 1 cut(s) 912
Cfr13I GGNCC 2 cut(s) 739, 1069
Cfr42I CCGCGG 1 cut(s) 745
ClaI ATCGAT 1 cut(s) 783
CseI GACGC 1 cut(s) 4
Csp6I GTAC 3 cut(s) 31, 97, 108
CspAI ACCGGT 1 cut(s) 912
CviAII CATG 6 cut(s) 52, 427, 770, 898, 1036, 1085
CviQI GTAC 3 cut(s) 31, 97, 108
DdeI CTNAG 7 cut(s) 466, 712, 829, 851, 876, 953, 1017
DpnI GATC 2 cut(s) 524, 1050
DpnII GATC 2 cut(s) 522, 1048
DraIII CACNNNGTG 1 cut(s) 469
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 711
EarI CTCTTC 1 cut(s) 711
EciI GGCGGA 1 cut(s) 1022
Eco47I GGWCC 2 cut(s) 739, 1069
Eco57I CTGAAG 1 cut(s) 375
EcoO109I RGGNCCY 1 cut(s) 1069
EcoRII CCWGG 2 cut(s) 598, 1060
EcoT22I ATGCAT 1 cut(s) 782
FaeI CATG 6 cut(s) 55, 430, 773, 901, 1039, 1088
FaqI GGGAC 2 cut(s) 331, 1055
FatI CATG 6 cut(s) 51, 426, 769, 897, 1035, 1084
Fnu4HI GCNGC 5 cut(s) 195, 224, 552, 588, 745
Fsp4HI GCNGC 5 cut(s) 195, 224, 552, 588, 745
FspBI CTAG 1 cut(s) 1041
GlaI GCGC 1 cut(s) 757
GluI GCNGC 5 cut(s) 195, 224, 552, 588, 745
HaeIII GGCC 2 cut(s) 5, 747
HapII CCGG 3 cut(s) 526, 913, 1045
HgaI GACGC 1 cut(s) 4
HhaI GCGC 1 cut(s) 758
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 6 cut(s) 55, 430, 773, 901, 1039, 1088
Hin6I GCGC 1 cut(s) 756
HinP1I GCGC 1 cut(s) 756
HincII GTYRAC 2 cut(s) 447, 903
HindII GTYRAC 2 cut(s) 447, 903
HinfI GANTC 5 cut(s) 39, 319, 487, 841, 878
HpaII CCGG 3 cut(s) 526, 913, 1045
Hpy166II GTNNAC 3 cut(s) 407, 447, 903
Hpy188I TCNGA 6 cut(s) 11, 499, 840, 872, 883, 942
Hpy188III TCNNGA 5 cut(s) 58, 560, 581, 650, 845
Hpy8I GTNNAC 3 cut(s) 407, 447, 903
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 4 cut(s) 334, 667, 722, 1083
HpyCH4III ACNGT 5 cut(s) 151, 310, 347, 404, 888
HpyF10VI GCNNNNNNNGC 7 cut(s) 423, 548, 638, 753, 958, 967, 1013
HpyF3I CTNAG 7 cut(s) 466, 712, 829, 851, 876, 953, 1017
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 6 cut(s) 55, 430, 773, 901, 1039, 1088
HspAI GCGC 1 cut(s) 756
KpnI GGTACC 1 cut(s) 100
KspI CCGCGG 1 cut(s) 745
Kzo9I GATC 2 cut(s) 522, 1048
LmnI GCTCC 2 cut(s) 652, 975
Lsp1109I GCAGC 4 cut(s) 206, 235, 538, 574
LweI GCATC 1 cut(s) 789
MaeI CTAG 1 cut(s) 1041
MaeIII GTNAC 2 cut(s) 398, 429
MalI GATC 2 cut(s) 524, 1050
MboI GATC 2 cut(s) 522, 1048
MboII GAAGA 4 cut(s) 34, 368, 465, 728
MflI RGATCY 1 cut(s) 1048
MhlI GDGCHC 2 cut(s) 409, 478
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 72, 267, 763
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 313, 887
MmeI TCCRAC 2 cut(s) 707, 1060
MnlI CCTC 7 cut(s) 5, 556, 563, 631, 730, 825, 860
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 782
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 84, 1089
MslI CAYNNNNRTG 1 cut(s) 149
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 197, 744
MspI CCGG 3 cut(s) 526, 913, 1045
MspR9I CCNGG 4 cut(s) 527, 600, 1046, 1062
Mva1269I GAATGC 1 cut(s) 782
MvaI CCWGG 2 cut(s) 600, 1062
MvnI CGCG 2 cut(s) 59, 744
MwoI GCNNNNNNNGC 7 cut(s) 423, 548, 638, 753, 958, 967, 1013
NciI CCSGG 2 cut(s) 527, 1046
NdeII GATC 2 cut(s) 522, 1048
NlaIII CATG 6 cut(s) 55, 430, 773, 901, 1039, 1088
NlaIV GGNNCC 5 cut(s) 98, 531, 821, 1050, 1071
NmuCI GTSAC 1 cut(s) 429
NruI TCGCGA 1 cut(s) 59
NsiI ATGCAT 1 cut(s) 782
NspI RCATGY 2 cut(s) 430, 1088
OliI CACNNNNGTG 1 cut(s) 149
PciI ACATGT 1 cut(s) 1084
PctI GAATGC 1 cut(s) 782
PfeI GAWTC 3 cut(s) 39, 487, 841
PinAI ACCGGT 1 cut(s) 912
PkrI GCNGC 5 cut(s) 196, 225, 553, 589, 746
PleI GAGTC 2 cut(s) 313, 886
PpsI GAGTC 2 cut(s) 313, 886
PpuMI RGGWCCY 1 cut(s) 1069
PscI ACATGT 1 cut(s) 1084
Psp5II RGGWCCY 1 cut(s) 1069
Psp6I CCWGG 2 cut(s) 598, 1060
PspGI CCWGG 2 cut(s) 598, 1060
PspN4I GGNNCC 5 cut(s) 98, 531, 821, 1050, 1071
PspPI GGNCC 2 cut(s) 739, 1069
PspPPI RGGWCCY 1 cut(s) 1069
PstI CTGCAG 1 cut(s) 556
PstNI CAGNNNCTG 1 cut(s) 992
PsuI RGATCY 1 cut(s) 1048
PvuII CAGCTG 1 cut(s) 197
RruI TCGCGA 1 cut(s) 59
RsaI GTAC 3 cut(s) 32, 98, 109
RsaNI GTAC 3 cut(s) 31, 97, 108
RseI CAYNNNNRTG 1 cut(s) 149
SacII CCGCGG 1 cut(s) 745
SaqAI TTAA 2 cut(s) 84, 1089
SatI GCNGC 5 cut(s) 195, 224, 552, 588, 745
Sau3AI GATC 2 cut(s) 522, 1048
Sau96I GGNCC 2 cut(s) 739, 1069
SchI GAGTC 2 cut(s) 313, 887
ScrFI CCNGG 4 cut(s) 527, 600, 1046, 1062
SduI GDGCHC 2 cut(s) 409, 478
SfaNI GCATC 1 cut(s) 789
SfcI CTRYAG 2 cut(s) 147, 552
Sfr303I CCGCGG 1 cut(s) 745
SgrBI CCGCGG 1 cut(s) 745
SinI GGWCC 2 cut(s) 739, 1069
SmiMI CAYNNNNRTG 1 cut(s) 149
Sse9I AATT 3 cut(s) 72, 267, 763
SsiI CCGC 4 cut(s) 94, 742, 744, 1007
SspMI CTAG 1 cut(s) 1041
StyD4I CCNGG 4 cut(s) 525, 598, 1044, 1060
TaaI ACNGT 5 cut(s) 151, 310, 347, 404, 888
TaqI TCGA 5 cut(s) 18, 338, 783, 796, 846
TasI AATT 3 cut(s) 72, 267, 763
TatI WGTACW 1 cut(s) 107
TauI GCSGC 1 cut(s) 747
TfiI GAWTC 3 cut(s) 39, 487, 841
Tru1I TTAA 2 cut(s) 84, 1089
Tru9I TTAA 2 cut(s) 84, 1089
TscAI CASTG 6 cut(s) 70, 156, 639, 700, 859, 1018
TseFI GTSAC 1 cut(s) 429
TseI GCWGC 4 cut(s) 194, 223, 551, 587
Tsp45I GTSAC 1 cut(s) 429
TspDTI ATGAA 1 cut(s) 741
TspGWI ACGGA 1 cut(s) 105
TspRI CASTG 6 cut(s) 70, 156, 639, 700, 859, 1018
VneI GTGCAC 1 cut(s) 405
VpaK11BI GGWCC 2 cut(s) 739, 1069
XceI RCATGY 2 cut(s) 430, 1088
XspI CTAG 1 cut(s) 1041
Zsp2I ATGCAT 1 cut(s) 782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.