Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0012512

Physical Location & Seq

Genomic Coordinates Forward (+)

57681802 .. 57684607

Gene Structure 2806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004250

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGCCATCAGAGGCGTCGATTTCAAGTGGTACGATGGATTCTTCTTGTCCATGCTCGCGACCAGTGTAGTAATTGTTGCGATTAATTGGAAGCGGTACCATACTTGTACATATCCGTTGCATATATGGATTGTGGTTGATTACACTACAGTGTTTGTATTTCGCTTGTTGATGTTTGTTGATAATGGGCTGGCAGCTGGAATGGGTTTGGATTTTGGGTGGCAGCAAAGATATGCTCGTTTCTGTGGGAGAGTAGTGGTTCTTTCAATTCTTTCTCTGCTACTCTATCCATTTCTTTGGGCTTGGACGGTCATTGGGACTCTGTGGTTTAGAAGCTCGAAGGACTGTTTGCCTGAAGATGGACAGAAATGGGGTTTTCTTATTTGGTTGCTTTTTAGTTACTGTGCACTACTTTGCATTTCGTGCATGTCACTTGGGAAGTGGTTGACACGAAGACAGGCACACTTAGTGCGTGCTCAACAAGGGATTCCTGTATCAGAGTATGGGGTTTTGGTTGATATGATCCGGGTGCCAGAATGGGCATTTGAAGCTGCAGGTCAAGAGGCAAGAGGAATGGGTCAAGAAGCTGCATACCAACCTGGACTTTACTTGACAACAGCACAGAGAGAAGCAGTGGAGGCACTCATTCAGGAGCTTCCAAAGTTCAGGTTGAAGGCTGTTCCAACTGATTGCAGTGAATGTCCAATCTGCTTAGAAGAGTTCTATGAAGGCAATGAGGTTCGCGGCCTACCTTGCGCTCACAATTTCCATGTAGAATGCATCGATGAGTGGCTTCGATTGAATGTGAAATGTCCTCGGTGCCGTTGCTCAGTCTTTCCGAATCTCGACCTCAGTGCTATTTCCACTCTCCGAGCTGAGTCTGAACGGTCATCTGTCATGTTGACTGCCAACCGGTATGTGAGAACCCAACCATCAAGTCAGAGCTATATGCTGAGATTGCAGGGTTTGCTCCACCCAGTCCATACAGAAACTGCAAGCAATGGGGCGGACACTGCTTTGGAAACTGCCGAGAATGGGGGTGTTGCCATGTCTAGCCGGGATCCATTAAGCCCAGGGCAGGCCCCTTCTGTTGGACATGTTAATAGTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009743 GO:0009756 GO:0009987 GO:0010033 GO:0010182 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023052 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

371

Amino Acids

41.71

Weight (kDa)

6.45

Isoelectric Point (pI)

45.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	233 - 275	1.3e-14	Ring finger domain
zf-RING_11	PF17123	233 - 261	3.8e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	233 - 274	4.8e-10	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	234 - 274	5.1e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	234 - 272	7e-08	RING-type zinc-finger
zf-rbx1	PF12678	234 - 275	1.5e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012512)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47990 AT3G47990 AT3G47990 AT3G47990 AT3G47990
fragaria_vesca	FvH4_5g05210 FvH4_5g05210
malus_domestica	MD06G1175600.v1.1
prunus_persica	Prupe.5G174900_v2.0.a1
pyrus_communis	pycom06g15630 pycom14g15130
rosa_chinensis	RchiOBHm_Chr7g0193701
rosa_laevigata	RLG00000004250
rosa_multiflora	Rmu_sc0001436.1_g000009
rosa_roxburghii	Rroxscaffold_3G00261890
rosa_rugosa	Rorug07G0011400
rosa_samantha	Rh7AG138200 Rh7DG139500
rosa_wichuraiana	Rw7G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	545
Acc65I	GGTACC	1 cut(s)	96
AccB1I	GGYRCC	3 cut(s)	96, 529, 819
AccII	CGCG	2 cut(s)	59, 744
AciI	CCGC	3 cut(s)	94, 744, 1007
AclWI	GGATC	3 cut(s)	517, 1055, 1068
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	375
AcyI	GRCGYC	1 cut(s)	15
AdeI	CACNNNGTG	1 cut(s)	469
AfaI	GTAC	3 cut(s)	32, 98, 109
AfiI	CCNNNNNNNGG	4 cut(s)	359, 1035, 1078, 1091
AflIII	ACRYGT	1 cut(s)	1096
AgeI	ACCGGT	1 cut(s)	912
AgsI	TTSAA	5 cut(s)	25, 267, 548, 673, 802
AjnI	CCWGG	2 cut(s)	598, 1072
AleI	CACNNNNGTG	1 cut(s)	149
AluBI	AGCT	7 cut(s)	197, 336, 551, 587, 655, 875, 945
AluI	AGCT	7 cut(s)	197, 336, 551, 587, 655, 875, 945
Alw21I	GWGCWC	2 cut(s)	409, 478
Alw44I	GTGCAC	1 cut(s)	405
AlwI	GGATC	3 cut(s)	517, 1055, 1068
AlwNI	CAGNNNCTG	1 cut(s)	992
AoxI	GGCC	3 cut(s)	3, 745, 1080
ApaLI	GTGCAC	1 cut(s)	405
ApeKI	GCWGC	4 cut(s)	194, 223, 551, 587
AseI	ATTAAT	1 cut(s)	84
AsiGI	ACCGGT	1 cut(s)	912
Asp718I	GGTACC	1 cut(s)	96
AspLEI	GCGC	1 cut(s)	758
AspS9I	GGNCC	1 cut(s)	1081
AsuC2I	CCSGG	2 cut(s)	527, 1058
BaeGI	GKGCMC	1 cut(s)	409
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	1060
BanI	GGYRCC	3 cut(s)	96, 529, 819
BbsI	GAAGAC	1 cut(s)	460
Bbv12I	GWGCWC	2 cut(s)	409, 478
BbvI	GCAGC	4 cut(s)	206, 235, 538, 574
BccI	CCATC	4 cut(s)	14, 29, 353, 940
BceAI	ACGGC	1 cut(s)	807
BcgI	CGANNNNNNTGC	2 cut(s)	836, 870
BciT130I	CCWGG	2 cut(s)	600, 1074
BcnI	CCSGG	2 cut(s)	527, 1058
BfaI	CTAG	1 cut(s)	1053
BfmI	CTRYAG	2 cut(s)	147, 552
BfuAI	ACCTGC	1 cut(s)	545
BisI	GCNGC	5 cut(s)	195, 224, 552, 588, 745
BlsI	GCNGC	5 cut(s)	196, 225, 553, 589, 746
Bme1390I	CCNGG	4 cut(s)	527, 600, 1058, 1074
BmgT120I	GGNCC	1 cut(s)	1081
BmiI	GGNNCC	5 cut(s)	98, 531, 821, 1062, 1083
BmrFI	CCNGG	4 cut(s)	527, 600, 1058, 1074
BmrI	ACTGGG	1 cut(s)	971
BmsI	GCATC	1 cut(s)	789
BmuI	ACTGGG	1 cut(s)	971
BpiI	GAAGAC	1 cut(s)	460
BpuMI	CCSGG	2 cut(s)	527, 1058
Bsa29I	ATCGAT	1 cut(s)	783
BsaHI	GRCGYC	1 cut(s)	15
BsaJI	CCNNGG	3 cut(s)	815, 1072, 1073
BsaWI	WCCGGW	1 cut(s)	912
Bsc4I	CCNNNNNNNGG	4 cut(s)	359, 1035, 1078, 1091
Bse118I	RCCGGY	1 cut(s)	912
Bse1I	ACTGG	2 cut(s)	63, 977
Bse3DI	GCAATG	2 cut(s)	739, 1006
BseBI	CCWGG	2 cut(s)	600, 1074
BseCI	ATCGAT	1 cut(s)	783
BseDI	CCNNGG	3 cut(s)	815, 1072, 1073
BseLI	CCNNNNNNNGG	4 cut(s)	359, 1035, 1078, 1091
BseMI	GCAATG	2 cut(s)	739, 1006
BseMII	CTCAG	4 cut(s)	843, 865, 867, 944
BseNI	ACTGG	2 cut(s)	63, 977
BseSI	GKGCMC	1 cut(s)	409
BseXI	GCAGC	4 cut(s)	206, 235, 538, 574
Bsh1236I	CGCG	2 cut(s)	59, 744
BshFI	GGCC	3 cut(s)	5, 747, 1082
BshNI	GGYRCC	3 cut(s)	96, 529, 819
BshTI	ACCGGT	1 cut(s)	912
BshVI	ATCGAT	1 cut(s)	783
BsiHKAI	GWGCWC	2 cut(s)	409, 478
BsiSI	CCGG	3 cut(s)	526, 913, 1057
BslFI	GGGAC	1 cut(s)	331
BslI	CCNNNNNNNGG	4 cut(s)	359, 1035, 1078, 1091
BsmFI	GGGAC	1 cut(s)	331
BsmI	GAATGC	1 cut(s)	782
BsnI	GGCC	3 cut(s)	5, 747, 1082
Bsp1286I	GDGCHC	2 cut(s)	409, 478
Bsp1407I	TGTACA	1 cut(s)	107
Bsp143I	GATC	2 cut(s)	522, 1060
Bsp68I	TCGCGA	1 cut(s)	59
BspACI	CCGC	3 cut(s)	94, 744, 1007
BspANI	GGCC	3 cut(s)	5, 747, 1082
BspCNI	CTCAG	4 cut(s)	842, 864, 868, 945
BspDI	ATCGAT	1 cut(s)	783
BspFNI	CGCG	2 cut(s)	59, 744
BspLI	GGNNCC	5 cut(s)	98, 531, 821, 1062, 1083
BspMAI	CTGCAG	1 cut(s)	556
BspMI	ACCTGC	1 cut(s)	545
BspPI	GGATC	3 cut(s)	517, 1055, 1068
BspT107I	GGYRCC	3 cut(s)	96, 529, 819
BsrDI	GCAATG	2 cut(s)	739, 1006
BsrFI	RCCGGY	1 cut(s)	912
BsrGI	TGTACA	1 cut(s)	107
BsrI	ACTGG	2 cut(s)	63, 977
BssAI	RCCGGY	1 cut(s)	912
BssECI	CCNNGG	3 cut(s)	815, 1072, 1073
BssMI	GATC	2 cut(s)	522, 1060
BssNI	GRCGYC	1 cut(s)	15
Bst2UI	CCWGG	2 cut(s)	600, 1074
Bst4CI	ACNGT	5 cut(s)	151, 310, 347, 404, 888
Bst6I	CTCTTC	1 cut(s)	711
BstACI	GRCGYC	1 cut(s)	15
BstAPI	GCANNNNNTGC	2 cut(s)	423, 967
BstAUI	TGTACA	1 cut(s)	107
BstC8I	GCNNGC	5 cut(s)	57, 192, 474, 997, 1080
BstDEI	CTNAG	6 cut(s)	466, 712, 829, 851, 876, 953
BstFNI	CGCG	2 cut(s)	59, 744
BstHHI	GCGC	1 cut(s)	758
BstKTI	GATC	2 cut(s)	525, 1063
BstMBI	GATC	2 cut(s)	522, 1060
BstMWI	GCNNNNNNNGC	7 cut(s)	423, 548, 638, 753, 958, 967, 1013
BstNI	CCWGG	2 cut(s)	600, 1074
BstNSI	RCATGY	2 cut(s)	430, 1100
BstSCI	CCNGG	4 cut(s)	525, 598, 1056, 1072
BstSFI	CTRYAG	2 cut(s)	147, 552
BstSLI	GKGCMC	1 cut(s)	409
BstUI	CGCG	2 cut(s)	59, 744
BstV1I	GCAGC	4 cut(s)	206, 235, 538, 574
BstV2I	GAAGAC	1 cut(s)	460
BstX2I	RGATCY	1 cut(s)	1060
BstXI	CCANNNNNNTGG	1 cut(s)	297
BstYI	RGATCY	1 cut(s)	1060
Bsu15I	ATCGAT	1 cut(s)	783
BsuRI	GGCC	3 cut(s)	5, 747, 1082
BsuTUI	ATCGAT	1 cut(s)	783
BtsI	GCAGTG	3 cut(s)	639, 700, 1011
BtsIMutI	CAGTG	6 cut(s)	70, 156, 639, 700, 859, 1011
BtuMI	TCGCGA	1 cut(s)	59
BveI	ACCTGC	1 cut(s)	545
Cac8I	GCNNGC	5 cut(s)	57, 192, 474, 997, 1080
CaiI	CAGNNNCTG	1 cut(s)	992
CfoI	GCGC	1 cut(s)	758
Cfr10I	RCCGGY	1 cut(s)	912
Cfr13I	GGNCC	1 cut(s)	1081
ClaI	ATCGAT	1 cut(s)	783
CseI	GACGC	1 cut(s)	4
Csp6I	GTAC	3 cut(s)	31, 97, 108
CspAI	ACCGGT	1 cut(s)	912
CviAII	CATG	6 cut(s)	52, 427, 770, 898, 1048, 1097
CviQI	GTAC	3 cut(s)	31, 97, 108
DdeI	CTNAG	6 cut(s)	466, 712, 829, 851, 876, 953
DpnI	GATC	2 cut(s)	524, 1062
DpnII	GATC	2 cut(s)	522, 1060
DraIII	CACNNNGTG	1 cut(s)	469
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	711
EarI	CTCTTC	1 cut(s)	711
EciI	GGCGGA	1 cut(s)	1022
Eco57I	CTGAAG	1 cut(s)	375
EcoO109I	RGGNCCY	1 cut(s)	1081
EcoRII	CCWGG	2 cut(s)	598, 1072
EcoT22I	ATGCAT	1 cut(s)	782
FaeI	CATG	6 cut(s)	55, 430, 773, 901, 1051, 1100
FaqI	GGGAC	1 cut(s)	331
FatI	CATG	6 cut(s)	51, 426, 769, 897, 1047, 1096
Fnu4HI	GCNGC	5 cut(s)	195, 224, 552, 588, 745
Fsp4HI	GCNGC	5 cut(s)	195, 224, 552, 588, 745
FspBI	CTAG	1 cut(s)	1053
GlaI	GCGC	1 cut(s)	757
GluI	GCNGC	5 cut(s)	195, 224, 552, 588, 745
HaeIII	GGCC	3 cut(s)	5, 747, 1082
HapII	CCGG	3 cut(s)	526, 913, 1057
HgaI	GACGC	1 cut(s)	4
HhaI	GCGC	1 cut(s)	758
Hin1I	GRCGYC	1 cut(s)	15
Hin1II	CATG	6 cut(s)	55, 430, 773, 901, 1051, 1100
Hin6I	GCGC	1 cut(s)	756
HinP1I	GCGC	1 cut(s)	756
HincII	GTYRAC	2 cut(s)	447, 903
HindII	GTYRAC	2 cut(s)	447, 903
HinfI	GANTC	5 cut(s)	39, 319, 487, 841, 878
HpaII	CCGG	3 cut(s)	526, 913, 1057
Hpy166II	GTNNAC	3 cut(s)	407, 447, 903
Hpy188I	TCNGA	6 cut(s)	11, 499, 840, 872, 883, 942
Hpy188III	TCNNGA	5 cut(s)	58, 560, 581, 650, 845
Hpy8I	GTNNAC	3 cut(s)	407, 447, 903
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	4 cut(s)	334, 667, 722, 1095
HpyCH4III	ACNGT	5 cut(s)	151, 310, 347, 404, 888
HpyF10VI	GCNNNNNNNGC	7 cut(s)	423, 548, 638, 753, 958, 967, 1013
HpyF3I	CTNAG	6 cut(s)	466, 712, 829, 851, 876, 953
Hsp92I	GRCGYC	1 cut(s)	15
Hsp92II	CATG	6 cut(s)	55, 430, 773, 901, 1051, 1100
HspAI	GCGC	1 cut(s)	756
KpnI	GGTACC	1 cut(s)	100
Kzo9I	GATC	2 cut(s)	522, 1060
LmnI	GCTCC	2 cut(s)	652, 975
Lsp1109I	GCAGC	4 cut(s)	206, 235, 538, 574
LweI	GCATC	1 cut(s)	789
MaeI	CTAG	1 cut(s)	1053
MaeIII	GTNAC	2 cut(s)	398, 429
MalI	GATC	2 cut(s)	524, 1062
MboI	GATC	2 cut(s)	522, 1060
MboII	GAAGA	4 cut(s)	34, 368, 465, 728
MflI	RGATCY	1 cut(s)	1060
MhlI	GDGCHC	2 cut(s)	409, 478
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	72, 85, 267, 763
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	313, 887
MmeI	TCCRAC	2 cut(s)	707, 1072
MnlI	CCTC	7 cut(s)	5, 556, 563, 631, 730, 825, 860
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	782
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	84, 1067, 1101
MslI	CAYNNNNRTG	1 cut(s)	149
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	197
MspI	CCGG	3 cut(s)	526, 913, 1057
MspR9I	CCNGG	4 cut(s)	527, 600, 1058, 1074
Mva1269I	GAATGC	1 cut(s)	782
MvaI	CCWGG	2 cut(s)	600, 1074
MvnI	CGCG	2 cut(s)	59, 744
MwoI	GCNNNNNNNGC	7 cut(s)	423, 548, 638, 753, 958, 967, 1013
NciI	CCSGG	2 cut(s)	527, 1058
NdeII	GATC	2 cut(s)	522, 1060
NlaIII	CATG	6 cut(s)	55, 430, 773, 901, 1051, 1100
NlaIV	GGNNCC	5 cut(s)	98, 531, 821, 1062, 1083
NmeAIII	GCCGAG	1 cut(s)	1054
NmuCI	GTSAC	1 cut(s)	429
NruI	TCGCGA	1 cut(s)	59
NsiI	ATGCAT	1 cut(s)	782
NspI	RCATGY	2 cut(s)	430, 1100
OliI	CACNNNNGTG	1 cut(s)	149
PasI	CCCWGGG	1 cut(s)	1073
PciI	ACATGT	1 cut(s)	1096
PctI	GAATGC	1 cut(s)	782
PfeI	GAWTC	3 cut(s)	39, 487, 841
PinAI	ACCGGT	1 cut(s)	912
PkrI	GCNGC	5 cut(s)	196, 225, 553, 589, 746
PleI	GAGTC	2 cut(s)	313, 886
PpsI	GAGTC	2 cut(s)	313, 886
PscI	ACATGT	1 cut(s)	1096
PshBI	ATTAAT	1 cut(s)	84
Psp6I	CCWGG	2 cut(s)	598, 1072
PspGI	CCWGG	2 cut(s)	598, 1072
PspN4I	GGNNCC	5 cut(s)	98, 531, 821, 1062, 1083
PspPI	GGNCC	1 cut(s)	1081
PstI	CTGCAG	1 cut(s)	556
PstNI	CAGNNNCTG	1 cut(s)	992
PsuI	RGATCY	1 cut(s)	1060
PvuII	CAGCTG	1 cut(s)	197
RruI	TCGCGA	1 cut(s)	59
RsaI	GTAC	3 cut(s)	32, 98, 109
RsaNI	GTAC	3 cut(s)	31, 97, 108
RseI	CAYNNNNRTG	1 cut(s)	149
SaqAI	TTAA	3 cut(s)	84, 1067, 1101
SatI	GCNGC	5 cut(s)	195, 224, 552, 588, 745
Sau3AI	GATC	2 cut(s)	522, 1060
Sau96I	GGNCC	1 cut(s)	1081
SchI	GAGTC	2 cut(s)	313, 887
ScrFI	CCNGG	4 cut(s)	527, 600, 1058, 1074
SduI	GDGCHC	2 cut(s)	409, 478
SfaNI	GCATC	1 cut(s)	789
SfcI	CTRYAG	2 cut(s)	147, 552
SmiMI	CAYNNNNRTG	1 cut(s)	149
Sse9I	AATT	4 cut(s)	72, 85, 267, 763
SsiI	CCGC	3 cut(s)	94, 744, 1007
SspMI	CTAG	1 cut(s)	1053
StyD4I	CCNGG	4 cut(s)	525, 598, 1056, 1072
TaaI	ACNGT	5 cut(s)	151, 310, 347, 404, 888
TaqI	TCGA	5 cut(s)	18, 338, 783, 796, 846
TasI	AATT	4 cut(s)	72, 85, 267, 763
TatI	WGTACW	1 cut(s)	107
TauI	GCSGC	1 cut(s)	747
TfiI	GAWTC	3 cut(s)	39, 487, 841
Tru1I	TTAA	3 cut(s)	84, 1067, 1101
Tru9I	TTAA	3 cut(s)	84, 1067, 1101
TscAI	CASTG	6 cut(s)	70, 156, 639, 700, 859, 1018
TseFI	GTSAC	1 cut(s)	429
TseI	GCWGC	4 cut(s)	194, 223, 551, 587
Tsp45I	GTSAC	1 cut(s)	429
TspDTI	ATGAA	1 cut(s)	741
TspGWI	ACGGA	1 cut(s)	105
TspRI	CASTG	6 cut(s)	70, 156, 639, 700, 859, 1018
VneI	GTGCAC	1 cut(s)	405
VspI	ATTAAT	1 cut(s)	84
XceI	RCATGY	2 cut(s)	430, 1100
XspI	CTAG	1 cut(s)	1053
Zsp2I	ATGCAT	1 cut(s)	782

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.