Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0012512

Physical Location & Seq

Genomic Coordinates Reverse (-)

17838673 .. 17841587

Gene Structure 2915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g15130.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGCCGTCCGAGGCGTCGATTTCAAGTGGTACGATGGGTTCTTCTTATCGATGCTTGCGACGAGTGTAGTGATTGTTGCAATTAATTGGAAGCGTTACCATACTTGTACATTCCCGTTGCACATATGGATCGTGGTTGATTACACTGCTGTGTTTGTTTTTCGGATGCTGATGTTTGTGGATAATGGGCTTGCCTCTGGAATGGGTTTGGATCTTGGGTGGCAGCAAAGATATGCTCGTTTCTGCGGAAGAGTAGTGGTCCTTTCGATTCTTTCTCTGTTGCTCTATCCATTTCTTTGGACTTGGACAGTAATCGGTACGCTGTGGTTTCAAAAATCGAAGGACTGTTTGCCCGAAAATGGTCACAAATGGGGTTTTCTCATTTGGTTGCTTTTTAGCTACTGTGCACTACTTTGCGTTTCTTGCATGTCGCTTGGGAAGTGGTTGACACGAAGAGAGGCACACTTATTGCGTGCTCAACAAGGGATTCCTGTGTCAGAATATGGGGTTTTGGTTGATATGATTCGGGTGCCAGATTGGGCATTTGAAGCTGCCGGTCAAGAAACAAGAGGGATGGGGCAAGATACTGCTGCATACCAACCTGGACTTTACTTGACTCAAGCACAGAGAGAAGCAGTGGAAGCACTCATTCAGGAGCTTCCAAAGTTCAGACTGAAGGCTGTTCCAACTGATTGCAGTGAATGTCCAATCTGCTTGGAAGAGTTTCATGTAGGCAACGAGGTTCGCGGCCTGCCTTGCGCTCACAATTTTCATGTAGAATGCATCGATGAGTGGCTTCGACTGAATGTGAAATGTCCCAGATGCCGTTGCTCAGTCTTCCCAAATCTCGACCTTAGTGCTATATCCAATCTCCGTCCTGACTCTGAGCGTTCATCTCTCAGTGTGTTGACAGCCAACCGGTATGTGAGAACCCGACCTGACAGTCAGAGGCATTTGTTGAGGTTGCAGGGAGCATTCCGCCCAGTTCGTACTGAAAATGCAGGTGCAGGCAATGAGGCAGACACTTCTTTGGAAACTTCTGAGGAAGGGGGTATTGCTCTCTCATCTACTCGGGATCTTTCGAGCCCAAGGCCGGTCCCTTCCACTGAACGTATTGTCGTTGTTGAGTCCCCCTCACAGCAACAACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009743 GO:0009756 GO:0009987 GO:0010033 GO:0010182 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023052 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

384

Amino Acids

43.4

Weight (kDa)

7.05

Isoelectric Point (pI)

44.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012512)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47990 AT3G47990 AT3G47990 AT3G47990 AT3G47990
fragaria_vesca	FvH4_5g05210 FvH4_5g05210
malus_domestica	MD06G1175600.v1.1
prunus_persica	Prupe.5G174900_v2.0.a1
pyrus_communis	pycom06g15630 pycom14g15130
rosa_chinensis	RchiOBHm_Chr7g0193701
rosa_laevigata	RLG00000004250
rosa_multiflora	Rmu_sc0001436.1_g000009
rosa_roxburghii	Rroxscaffold_3G00261890
rosa_rugosa	Rorug07G0011400
rosa_samantha	Rh7AG138200 Rh7DG139500
rosa_wichuraiana	Rw7G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	992
AasI	GACNNNNNNGTC	1 cut(s)	942
Acc36I	ACCTGC	1 cut(s)	992
AccB1I	GGYRCC	1 cut(s)	529
AccII	CGCG	1 cut(s)	747
AciI	CCGC	3 cut(s)	246, 747, 979
AclWI	GGATC	3 cut(s)	137, 219, 1083
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	695
AcyI	GRCGYC	1 cut(s)	15
AfaI	GTAC	4 cut(s)	32, 109, 319, 991
AfiI	CCNNNNNNNGG	2 cut(s)	359, 1093
AgeI	ACCGGT	1 cut(s)	918
AgsI	TTSAA	3 cut(s)	25, 332, 548
AjnI	CCWGG	1 cut(s)	601
AleI	CACNNNNGTG	1 cut(s)	149
AluBI	AGCT	3 cut(s)	399, 551, 658
AluI	AGCT	3 cut(s)	399, 551, 658
Alw21I	GWGCWC	2 cut(s)	409, 478
Alw44I	GTGCAC	1 cut(s)	405
AlwI	GGATC	3 cut(s)	137, 219, 1083
Ama87I	CYCGRG	1 cut(s)	1071
AoxI	GGCC	3 cut(s)	3, 748, 1091
ApaLI	GTGCAC	1 cut(s)	405
ApeKI	GCWGC	3 cut(s)	223, 551, 590
AseI	ATTAAT	1 cut(s)	84
AsiGI	ACCGGT	1 cut(s)	918
Asp700I	GAANNNNTTC	1 cut(s)	723
AspLEI	GCGC	1 cut(s)	761
AspS9I	GGNCC	2 cut(s)	259, 1096
AvaI	CYCGRG	1 cut(s)	1071
AvaII	GGWCC	2 cut(s)	259, 1096
BaeGI	GKGCMC	1 cut(s)	409
BanI	GGYRCC	1 cut(s)	529
BanII	GRGCYC	1 cut(s)	1088
BbsI	GAAGAC	1 cut(s)	829
Bbv12I	GWGCWC	2 cut(s)	409, 478
BbvI	GCAGC	3 cut(s)	235, 538, 577
BccI	CCATC	2 cut(s)	29, 568
BceAI	ACGGC	1 cut(s)	810
BcgI	CGANNNNNNTGC	2 cut(s)	839, 873
BciT130I	CCWGG	1 cut(s)	603
BfuAI	ACCTGC	1 cut(s)	992
BisI	GCNGC	4 cut(s)	224, 552, 591, 748
BlsI	GCNGC	4 cut(s)	225, 553, 592, 749
Bme1390I	CCNGG	1 cut(s)	603
Bme18I	GGWCC	2 cut(s)	259, 1096
BmeT110I	CYCGRG	1 cut(s)	1071
BmgT120I	GGNCC	2 cut(s)	259, 1096
BmiI	GGNNCC	2 cut(s)	531, 1098
BmrFI	CCNGG	1 cut(s)	603
BmrI	ACTGGG	1 cut(s)	977
BmsI	GCATC	4 cut(s)	42, 156, 792, 812
BmuI	ACTGGG	1 cut(s)	977
BpiI	GAAGAC	1 cut(s)	829
BplI	GAGNNNNNCTC	2 cut(s)	1118, 1150
BpuEI	CTTGAG	1 cut(s)	603
Bsa29I	ATCGAT	2 cut(s)	50, 786
BsaHI	GRCGYC	1 cut(s)	15
BsaJI	CCNNGG	2 cut(s)	10, 1088
BsaWI	WCCGGW	1 cut(s)	918
Bsc4I	CCNNNNNNNGG	2 cut(s)	359, 1093
Bse118I	RCCGGY	3 cut(s)	554, 918, 1093
Bse1I	ACTGG	1 cut(s)	983
Bse3DI	GCAATG	1 cut(s)	1018
BseBI	CCWGG	1 cut(s)	603
BseCI	ATCGAT	2 cut(s)	50, 786
BseDI	CCNNGG	2 cut(s)	10, 1088
BseGI	GGATG	2 cut(s)	171, 579
BseLI	CCNNNNNNNGG	2 cut(s)	359, 1093
BseMI	GCAATG	1 cut(s)	1018
BseMII	CTCAG	4 cut(s)	846, 876, 913, 1032
BseNI	ACTGG	1 cut(s)	983
BseSI	GKGCMC	1 cut(s)	409
BseXI	GCAGC	3 cut(s)	235, 538, 577
BsgI	GTGCAG	1 cut(s)	1026
Bsh1236I	CGCG	1 cut(s)	747
BshFI	GGCC	3 cut(s)	5, 750, 1093
BshNI	GGYRCC	1 cut(s)	529
BshTI	ACCGGT	1 cut(s)	918
BshVI	ATCGAT	2 cut(s)	50, 786
BsiHKAI	GWGCWC	2 cut(s)	409, 478
BsiHKCI	CYCGRG	1 cut(s)	1071
BsiSI	CCGG	3 cut(s)	555, 919, 1094
BslFI	GGGAC	3 cut(s)	801, 1082, 1114
BslI	CCNNNNNNNGG	2 cut(s)	359, 1093
BsmFI	GGGAC	3 cut(s)	801, 1082, 1114
BsmI	GAATGC	2 cut(s)	785, 974
BsnI	GGCC	3 cut(s)	5, 750, 1093
BsoBI	CYCGRG	1 cut(s)	1071
Bsp1286I	GDGCHC	3 cut(s)	409, 478, 1088
Bsp1407I	TGTACA	1 cut(s)	107
Bsp143I	GATC	3 cut(s)	129, 211, 1075
BspACI	CCGC	3 cut(s)	246, 747, 979
BspANI	GGCC	3 cut(s)	5, 750, 1093
BspCNI	CTCAG	4 cut(s)	845, 877, 912, 1033
BspDI	ATCGAT	2 cut(s)	50, 786
BspFNI	CGCG	1 cut(s)	747
BspLI	GGNNCC	2 cut(s)	531, 1098
BspMI	ACCTGC	1 cut(s)	992
BspPI	GGATC	3 cut(s)	137, 219, 1083
BspT107I	GGYRCC	1 cut(s)	529
BsrDI	GCAATG	1 cut(s)	1018
BsrFI	RCCGGY	3 cut(s)	554, 918, 1093
BsrGI	TGTACA	1 cut(s)	107
BsrI	ACTGG	1 cut(s)	983
BssAI	RCCGGY	3 cut(s)	554, 918, 1093
BssECI	CCNNGG	2 cut(s)	10, 1088
BssMI	GATC	3 cut(s)	129, 211, 1075
BssNI	GRCGYC	1 cut(s)	15
BssT1I	CCWWGG	1 cut(s)	1088
Bst2UI	CCWGG	1 cut(s)	603
Bst4CI	ACNGT	4 cut(s)	310, 347, 404, 944
Bst6I	CTCTTC	3 cut(s)	244, 448, 714
BstACI	GRCGYC	1 cut(s)	15
BstAUI	TGTACA	1 cut(s)	107
BstC8I	GCNNGC	5 cut(s)	57, 192, 474, 752, 1009
BstDEI	CTNAG	5 cut(s)	832, 854, 885, 899, 1041
BstF5I	GGATG	2 cut(s)	171, 579
BstFNI	CGCG	1 cut(s)	747
BstHHI	GCGC	1 cut(s)	761
BstKTI	GATC	3 cut(s)	132, 214, 1078
BstMBI	GATC	3 cut(s)	129, 211, 1075
BstMWI	GCNNNNNNNGC	4 cut(s)	423, 548, 641, 756
BstNI	CCWGG	1 cut(s)	603
BstNSI	RCATGY	1 cut(s)	430
BstSCI	CCNGG	1 cut(s)	601
BstSLI	GKGCMC	1 cut(s)	409
BstUI	CGCG	1 cut(s)	747
BstV1I	GCAGC	3 cut(s)	235, 538, 577
BstV2I	GAAGAC	1 cut(s)	829
BstX2I	RGATCY	2 cut(s)	211, 1075
BstXI	CCANNNNNNTGG	1 cut(s)	297
BstYI	RGATCY	2 cut(s)	211, 1075
Bsu15I	ATCGAT	2 cut(s)	50, 786
BsuRI	GGCC	3 cut(s)	5, 750, 1093
BsuTUI	ATCGAT	2 cut(s)	50, 786
BtsCI	GGATG	2 cut(s)	171, 579
BtsI	GCAGTG	3 cut(s)	144, 642, 703
BtsIMutI	CAGTG	5 cut(s)	144, 642, 703, 907, 1104
BveI	ACCTGC	1 cut(s)	992
Cac8I	GCNNGC	5 cut(s)	57, 192, 474, 752, 1009
CfoI	GCGC	1 cut(s)	761
Cfr10I	RCCGGY	3 cut(s)	554, 918, 1093
Cfr13I	GGNCC	2 cut(s)	259, 1096
ClaI	ATCGAT	2 cut(s)	50, 786
CseI	GACGC	1 cut(s)	4
Csp6I	GTAC	4 cut(s)	31, 108, 318, 990
CspAI	ACCGGT	1 cut(s)	918
CviAII	CATG	3 cut(s)	427, 728, 773
CviQI	GTAC	4 cut(s)	31, 108, 318, 990
DdeI	CTNAG	5 cut(s)	832, 854, 885, 899, 1041
DpnI	GATC	3 cut(s)	131, 213, 1077
DpnII	GATC	3 cut(s)	129, 211, 1075
DrdI	GACNNNNNNGTC	1 cut(s)	942
DseDI	GACNNNNNNGTC	1 cut(s)	942
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	244, 448, 714
EarI	CTCTTC	3 cut(s)	244, 448, 714
EciI	GGCGGA	1 cut(s)	968
Eco130I	CCWWGG	1 cut(s)	1088
Eco24I	GRGCYC	1 cut(s)	1088
Eco47I	GGWCC	2 cut(s)	259, 1096
Eco57I	CTGAAG	1 cut(s)	695
Eco88I	CYCGRG	1 cut(s)	1071
EcoRII	CCWGG	1 cut(s)	601
EcoT14I	CCWWGG	1 cut(s)	1088
EcoT22I	ATGCAT	1 cut(s)	785
EcoT38I	GRGCYC	1 cut(s)	1088
ErhI	CCWWGG	1 cut(s)	1088
FaeI	CATG	3 cut(s)	430, 731, 776
FaqI	GGGAC	3 cut(s)	801, 1082, 1114
FatI	CATG	3 cut(s)	426, 727, 772
FauNDI	CATATG	1 cut(s)	125
Fnu4HI	GCNGC	4 cut(s)	224, 552, 591, 748
FokI	GGATG	2 cut(s)	178, 586
FriOI	GRGCYC	1 cut(s)	1088
Fsp4HI	GCNGC	4 cut(s)	224, 552, 591, 748
GlaI	GCGC	1 cut(s)	760
GluI	GCNGC	4 cut(s)	224, 552, 591, 748
HaeIII	GGCC	3 cut(s)	5, 750, 1093
HapII	CCGG	3 cut(s)	555, 919, 1094
HgaI	GACGC	1 cut(s)	4
HhaI	GCGC	1 cut(s)	761
Hin1I	GRCGYC	1 cut(s)	15
Hin1II	CATG	3 cut(s)	430, 731, 776
Hin6I	GCGC	1 cut(s)	759
HinP1I	GCGC	1 cut(s)	759
HincII	GTYRAC	2 cut(s)	447, 909
HindII	GTYRAC	2 cut(s)	447, 909
HinfI	GANTC	6 cut(s)	268, 487, 523, 616, 881, 1127
HpaII	CCGG	3 cut(s)	555, 919, 1094
Hpy166II	GTNNAC	3 cut(s)	407, 447, 909
Hpy188I	TCNGA	7 cut(s)	11, 165, 499, 671, 886, 948, 1042
Hpy188III	TCNNGA	6 cut(s)	198, 560, 653, 848, 878, 1073
Hpy8I	GTNNAC	3 cut(s)	407, 447, 909
Hpy99I	CGWCG	2 cut(s)	20, 64
HpyAV	CCTTC	4 cut(s)	334, 670, 1040, 1110
HpyCH4III	ACNGT	4 cut(s)	310, 347, 404, 944
HpyCH4IV	ACGT	1 cut(s)	1111
HpyF10VI	GCNNNNNNNGC	4 cut(s)	423, 548, 641, 756
HpyF3I	CTNAG	5 cut(s)	832, 854, 885, 899, 1041
HpySE526I	ACGT	1 cut(s)	1111
Hsp92I	GRCGYC	1 cut(s)	15
Hsp92II	CATG	3 cut(s)	430, 731, 776
HspAI	GCGC	1 cut(s)	759
Kzo9I	GATC	3 cut(s)	129, 211, 1075
LmnI	GCTCC	2 cut(s)	655, 971
Lsp1109I	GCAGC	3 cut(s)	235, 538, 577
LweI	GCATC	4 cut(s)	42, 156, 792, 812
MaeII	ACGT	1 cut(s)	1111
MaeIII	GTNAC	2 cut(s)	95, 362
MalI	GATC	3 cut(s)	131, 213, 1077
MboI	GATC	3 cut(s)	129, 211, 1075
MboII	GAAGA	5 cut(s)	34, 261, 465, 731, 829
MflI	RGATCY	2 cut(s)	211, 1075
MhlI	GDGCHC	3 cut(s)	409, 478, 1088
MluCI	AATT	3 cut(s)	81, 85, 766
MlyI	GAGTC	3 cut(s)	610, 875, 1136
MmeI	TCCRAC	1 cut(s)	710
Mph1103I	ATGCAT	1 cut(s)	785
MroXI	GAANNNNTTC	1 cut(s)	723
MseI	TTAA	1 cut(s)	84
MslI	CAYNNNNRTG	1 cut(s)	149
MspI	CCGG	3 cut(s)	555, 919, 1094
MspR9I	CCNGG	1 cut(s)	603
Mva1269I	GAATGC	2 cut(s)	785, 974
MvaI	CCWGG	1 cut(s)	603
MvnI	CGCG	1 cut(s)	747
MwoI	GCNNNNNNNGC	4 cut(s)	423, 548, 641, 756
NdeI	CATATG	1 cut(s)	125
NdeII	GATC	3 cut(s)	129, 211, 1075
NlaIII	CATG	3 cut(s)	430, 731, 776
NlaIV	GGNNCC	2 cut(s)	531, 1098
NmuCI	GTSAC	1 cut(s)	362
NsiI	ATGCAT	1 cut(s)	785
NspI	RCATGY	1 cut(s)	430
OliI	CACNNNNGTG	1 cut(s)	149
PaqCI	CACCTGC	1 cut(s)	992
PcsI	WCGNNNNNNNCGW	1 cut(s)	56
PctI	GAATGC	2 cut(s)	785, 974
PdmI	GAANNNNTTC	1 cut(s)	723
PfeI	GAWTC	3 cut(s)	268, 487, 523
PinAI	ACCGGT	1 cut(s)	918
PkrI	GCNGC	4 cut(s)	225, 553, 592, 749
PleI	GAGTC	3 cut(s)	610, 875, 1135
PpsI	GAGTC	3 cut(s)	610, 875, 1135
PshBI	ATTAAT	1 cut(s)	84
Psp6I	CCWGG	1 cut(s)	601
PspGI	CCWGG	1 cut(s)	601
PspN4I	GGNNCC	2 cut(s)	531, 1098
PspPI	GGNCC	2 cut(s)	259, 1096
PsrI	GAACNNNNNNTAC	2 cut(s)	23, 55
PsuI	RGATCY	2 cut(s)	211, 1075
RsaI	GTAC	4 cut(s)	32, 109, 319, 991
RsaNI	GTAC	4 cut(s)	31, 108, 318, 990
RseI	CAYNNNNRTG	1 cut(s)	149
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	4 cut(s)	224, 552, 591, 748
Sau3AI	GATC	3 cut(s)	129, 211, 1075
Sau96I	GGNCC	2 cut(s)	259, 1096
SchI	GAGTC	3 cut(s)	610, 875, 1136
ScrFI	CCNGG	1 cut(s)	603
SduI	GDGCHC	3 cut(s)	409, 478, 1088
SfaNI	GCATC	4 cut(s)	42, 156, 792, 812
SinI	GGWCC	2 cut(s)	259, 1096
SmiMI	CAYNNNNRTG	1 cut(s)	149
SmlI	CTYRAG	1 cut(s)	618
SmoI	CTYRAG	1 cut(s)	618
Sse9I	AATT	3 cut(s)	81, 85, 766
SsiI	CCGC	3 cut(s)	246, 747, 979
StyD4I	CCNGG	1 cut(s)	601
StyI	CCWWGG	1 cut(s)	1088
TaaI	ACNGT	4 cut(s)	310, 347, 404, 944
TaiI	ACGT	1 cut(s)	1114
TaqI	TCGA	8 cut(s)	18, 50, 266, 338, 786, 799, 849, 1082
TasI	AATT	3 cut(s)	81, 85, 766
TatI	WGTACW	1 cut(s)	107
TauI	GCSGC	1 cut(s)	750
TfiI	GAWTC	3 cut(s)	268, 487, 523
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TscAI	CASTG	5 cut(s)	151, 642, 703, 907, 1111
TseFI	GTSAC	1 cut(s)	362
TseI	GCWGC	3 cut(s)	223, 551, 590
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	3 cut(s)	716, 761, 882
TspGWI	ACGGA	1 cut(s)	863
TspRI	CASTG	5 cut(s)	151, 642, 703, 907, 1111
VneI	GTGCAC	1 cut(s)	405
VpaK11BI	GGWCC	2 cut(s)	259, 1096
VspI	ATTAAT	1 cut(s)	84
XceI	RCATGY	1 cut(s)	430
XmnI	GAANNNNTTC	1 cut(s)	723
Zsp2I	ATGCAT	1 cut(s)	785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.