Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0012512

Physical Location & Seq

Genomic Coordinates Forward (+)

56039735 .. 56043282

Gene Structure 3548 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00261890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGATTTTGGGTGGCAGCAAAGATATGCTCGTTTCTGTGGGAGAGTAGTGGTTCTTTCAATTCTTTCTCTGCTACTCTATCCATTTCTTTGGGCTTGGACGGTCATTGGGACTCTGTGGTTTAGAAGCTCGAAGGACTGTTTGCCTGAAGATGGACAGAAATGGGGTTTTCTTATTTGGTTGCTTTTTAGTTACTGTGCACTACTTTGCATTTCGTGCATGTCACTTGGGAAGTGGTTGACACGAAGACAGGCACACTTAGTGCGTGCTCAACAAGGGATTCCTGTATCAGAGTATGGGGTTTTGGTTGATATGATCCGGGTGCCAGATTGGGCATTTGAAGCTGCAGGTCAAGAAGCAAGAGGAATGGGTCAAGAAGCTGCATACCAACCTGGACTTTACTTGACAACAGCACAGAGAGAAGCAGTGGAGGCACTCATTCAGGAGCTTCCAAAGTTCAGGTTGAAGGCTGTTCCAACTGATTGCAGTGAATGTCCAATCTGCTTAGAAGAGTTCTATGAAGGCAATGAGGTTCGTGGCCTACCTTGCGCTCACAATTTCCATGTAGAATGCATCGATGAGTGGCTTCGATTGAATGTGAAATGTCCTCGGTGCCGTTGCTCAGTCTTTCCGAATCTCGACCTCAGTGCTATTTCCACTCTCCGAGCTGAGTCTGAACGGTCATCTGTCATGTTGACTGCCAACCGGTATGTGAGAACCCAACCATCAAGTCAGAGCTATATGCTGAGATTGCAGGGTTTGCTCCACCCAGTCCATACAGAAACTGCAAGCAATGGGGCGGACACTGCTTTGGAAACTGCCGAGAATGGGGGTGTTGCCATGTCTAGCCCAGGGCAGGTCCCTTCTGTTGGACATGTTAATAGTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009743 GO:0009756 GO:0009987 GO:0010033 GO:0010182 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023052 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

296

Amino Acids

33.21

Weight (kDa)

6.1

Isoelectric Point (pI)

52.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	164 - 206	9.1e-15	Ring finger domain
zf-RING_11	PF17123	164 - 192	2.8e-10	RING-like zinc finger
zf-C3HC4_2	PF13923	164 - 205	3.5e-10	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	165 - 205	3.7e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	165 - 203	5.1e-08	RING-type zinc-finger
zf-rbx1	PF12678	165 - 206	1.7e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012512)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47990 AT3G47990 AT3G47990 AT3G47990 AT3G47990
fragaria_vesca	FvH4_5g05210 FvH4_5g05210
malus_domestica	MD06G1175600.v1.1
prunus_persica	Prupe.5G174900_v2.0.a1
pyrus_communis	pycom06g15630 pycom14g15130
rosa_chinensis	RchiOBHm_Chr7g0193701
rosa_laevigata	RLG00000004250
rosa_multiflora	Rmu_sc0001436.1_g000009
rosa_roxburghii	Rroxscaffold_3G00261890
rosa_rugosa	Rorug07G0011400
rosa_samantha	Rh7AG138200 Rh7DG139500
rosa_wichuraiana	Rw7G011770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	338, 847
AccB1I	GGYRCC	2 cut(s)	322, 612
AciI	CCGC	1 cut(s)	800
AclWI	GGATC	1 cut(s)	310
AcuI	CTGAAG	1 cut(s)	168
AdeI	CACNNNGTG	1 cut(s)	262
AfiI	CCNNNNNNNGG	4 cut(s)	152, 828, 856, 869
AflIII	ACRYGT	1 cut(s)	874
AgeI	ACCGGT	1 cut(s)	705
AgsI	TTSAA	4 cut(s)	60, 341, 466, 595
AjnI	CCWGG	2 cut(s)	391, 850
AluBI	AGCT	6 cut(s)	129, 344, 380, 448, 668, 738
AluI	AGCT	6 cut(s)	129, 344, 380, 448, 668, 738
Alw21I	GWGCWC	2 cut(s)	202, 271
Alw44I	GTGCAC	1 cut(s)	198
AlwI	GGATC	1 cut(s)	310
AlwNI	CAGNNNCTG	1 cut(s)	785
AoxI	GGCC	1 cut(s)	538
ApaLI	GTGCAC	1 cut(s)	198
ApeKI	GCWGC	3 cut(s)	16, 344, 380
AsiGI	ACCGGT	1 cut(s)	705
AspLEI	GCGC	1 cut(s)	551
AspS9I	GGNCC	1 cut(s)	859
AsuC2I	CCSGG	1 cut(s)	320
AvaII	GGWCC	1 cut(s)	859
BaeGI	GKGCMC	1 cut(s)	202
BanI	GGYRCC	2 cut(s)	322, 612
BbsI	GAAGAC	1 cut(s)	253
Bbv12I	GWGCWC	2 cut(s)	202, 271
BbvI	GCAGC	3 cut(s)	28, 331, 367
BccI	CCATC	2 cut(s)	146, 733
BceAI	ACGGC	1 cut(s)	600
BcgI	CGANNNNNNTGC	2 cut(s)	629, 663
BciT130I	CCWGG	2 cut(s)	393, 852
BcnI	CCSGG	1 cut(s)	320
BfaI	CTAG	1 cut(s)	846
BfmI	CTRYAG	1 cut(s)	345
BfuAI	ACCTGC	2 cut(s)	338, 847
BisI	GCNGC	3 cut(s)	17, 345, 381
BlsI	GCNGC	3 cut(s)	18, 346, 382
Bme1390I	CCNGG	3 cut(s)	320, 393, 852
Bme18I	GGWCC	1 cut(s)	859
BmgT120I	GGNCC	1 cut(s)	859
BmiI	GGNNCC	3 cut(s)	324, 614, 861
BmrFI	CCNGG	3 cut(s)	320, 393, 852
BmrI	ACTGGG	1 cut(s)	764
BmsI	GCATC	1 cut(s)	582
BmuI	ACTGGG	1 cut(s)	764
BpiI	GAAGAC	1 cut(s)	253
BpuMI	CCSGG	1 cut(s)	320
Bsa29I	ATCGAT	1 cut(s)	576
BsaJI	CCNNGG	3 cut(s)	608, 850, 851
BsaWI	WCCGGW	1 cut(s)	705
Bsc4I	CCNNNNNNNGG	4 cut(s)	152, 828, 856, 869
Bse118I	RCCGGY	1 cut(s)	705
Bse1I	ACTGG	1 cut(s)	770
Bse3DI	GCAATG	2 cut(s)	532, 799
BseBI	CCWGG	2 cut(s)	393, 852
BseCI	ATCGAT	1 cut(s)	576
BseDI	CCNNGG	3 cut(s)	608, 850, 851
BseLI	CCNNNNNNNGG	4 cut(s)	152, 828, 856, 869
BseMI	GCAATG	2 cut(s)	532, 799
BseMII	CTCAG	4 cut(s)	636, 658, 660, 737
BseNI	ACTGG	1 cut(s)	770
BseSI	GKGCMC	1 cut(s)	202
BseXI	GCAGC	3 cut(s)	28, 331, 367
BshFI	GGCC	1 cut(s)	540
BshNI	GGYRCC	2 cut(s)	322, 612
BshTI	ACCGGT	1 cut(s)	705
BshVI	ATCGAT	1 cut(s)	576
BsiHKAI	GWGCWC	2 cut(s)	202, 271
BsiSI	CCGG	2 cut(s)	319, 706
BslFI	GGGAC	2 cut(s)	124, 845
BslI	CCNNNNNNNGG	4 cut(s)	152, 828, 856, 869
BsmFI	GGGAC	2 cut(s)	124, 845
BsmI	GAATGC	1 cut(s)	575
BsnI	GGCC	1 cut(s)	540
Bsp1286I	GDGCHC	2 cut(s)	202, 271
Bsp143I	GATC	1 cut(s)	315
BspACI	CCGC	1 cut(s)	800
BspANI	GGCC	1 cut(s)	540
BspCNI	CTCAG	4 cut(s)	635, 657, 661, 738
BspDI	ATCGAT	1 cut(s)	576
BspLI	GGNNCC	3 cut(s)	324, 614, 861
BspMAI	CTGCAG	1 cut(s)	349
BspMI	ACCTGC	2 cut(s)	338, 847
BspPI	GGATC	1 cut(s)	310
BspT107I	GGYRCC	2 cut(s)	322, 612
BsrDI	GCAATG	2 cut(s)	532, 799
BsrFI	RCCGGY	1 cut(s)	705
BsrI	ACTGG	1 cut(s)	770
BssAI	RCCGGY	1 cut(s)	705
BssECI	CCNNGG	3 cut(s)	608, 850, 851
BssMI	GATC	1 cut(s)	315
Bst2UI	CCWGG	2 cut(s)	393, 852
Bst4CI	ACNGT	4 cut(s)	103, 140, 197, 681
Bst6I	CTCTTC	1 cut(s)	504
BstAPI	GCANNNNNTGC	2 cut(s)	216, 760
BstC8I	GCNNGC	2 cut(s)	267, 790
BstDEI	CTNAG	6 cut(s)	259, 505, 622, 644, 669, 746
BstHHI	GCGC	1 cut(s)	551
BstKTI	GATC	1 cut(s)	318
BstMBI	GATC	1 cut(s)	315
BstMWI	GCNNNNNNNGC	7 cut(s)	216, 341, 431, 546, 751, 760, 806
BstNI	CCWGG	2 cut(s)	393, 852
BstNSI	RCATGY	2 cut(s)	223, 878
BstSCI	CCNGG	3 cut(s)	318, 391, 850
BstSFI	CTRYAG	1 cut(s)	345
BstSLI	GKGCMC	1 cut(s)	202
BstV1I	GCAGC	3 cut(s)	28, 331, 367
BstV2I	GAAGAC	1 cut(s)	253
BstXI	CCANNNNNNTGG	1 cut(s)	90
Bsu15I	ATCGAT	1 cut(s)	576
BsuRI	GGCC	1 cut(s)	540
BsuTUI	ATCGAT	1 cut(s)	576
BtsI	GCAGTG	3 cut(s)	432, 493, 804
BtsIMutI	CAGTG	4 cut(s)	432, 493, 652, 804
BveI	ACCTGC	2 cut(s)	338, 847
Cac8I	GCNNGC	2 cut(s)	267, 790
CaiI	CAGNNNCTG	1 cut(s)	785
CfoI	GCGC	1 cut(s)	551
Cfr10I	RCCGGY	1 cut(s)	705
Cfr13I	GGNCC	1 cut(s)	859
ClaI	ATCGAT	1 cut(s)	576
CspAI	ACCGGT	1 cut(s)	705
CviAII	CATG	5 cut(s)	220, 563, 691, 841, 875
DdeI	CTNAG	6 cut(s)	259, 505, 622, 644, 669, 746
DpnI	GATC	1 cut(s)	317
DpnII	GATC	1 cut(s)	315
DraIII	CACNNNGTG	1 cut(s)	262
Eam1104I	CTCTTC	1 cut(s)	504
EarI	CTCTTC	1 cut(s)	504
EciI	GGCGGA	1 cut(s)	815
Eco47I	GGWCC	1 cut(s)	859
Eco57I	CTGAAG	1 cut(s)	168
EcoO109I	RGGNCCY	1 cut(s)	859
EcoRII	CCWGG	2 cut(s)	391, 850
EcoT22I	ATGCAT	1 cut(s)	575
FaeI	CATG	5 cut(s)	223, 566, 694, 844, 878
FaqI	GGGAC	2 cut(s)	124, 845
FatI	CATG	5 cut(s)	219, 562, 690, 840, 874
Fnu4HI	GCNGC	3 cut(s)	17, 345, 381
Fsp4HI	GCNGC	3 cut(s)	17, 345, 381
FspBI	CTAG	1 cut(s)	846
GlaI	GCGC	1 cut(s)	550
GluI	GCNGC	3 cut(s)	17, 345, 381
HaeIII	GGCC	1 cut(s)	540
HapII	CCGG	2 cut(s)	319, 706
HhaI	GCGC	1 cut(s)	551
Hin1II	CATG	5 cut(s)	223, 566, 694, 844, 878
Hin6I	GCGC	1 cut(s)	549
HinP1I	GCGC	1 cut(s)	549
HincII	GTYRAC	2 cut(s)	240, 696
HindII	GTYRAC	2 cut(s)	240, 696
HinfI	GANTC	4 cut(s)	112, 280, 634, 671
HpaII	CCGG	2 cut(s)	319, 706
Hpy166II	GTNNAC	3 cut(s)	200, 240, 696
Hpy188I	TCNGA	5 cut(s)	292, 633, 665, 676, 735
Hpy188III	TCNNGA	4 cut(s)	353, 374, 443, 638
Hpy8I	GTNNAC	3 cut(s)	200, 240, 696
HpyAV	CCTTC	4 cut(s)	127, 460, 515, 873
HpyCH4III	ACNGT	4 cut(s)	103, 140, 197, 681
HpyCH4V	TGCA	9 cut(s)	200, 210, 219, 347, 383, 486, 573, 754, 788
HpyF10VI	GCNNNNNNNGC	7 cut(s)	216, 341, 431, 546, 751, 760, 806
HpyF3I	CTNAG	6 cut(s)	259, 505, 622, 644, 669, 746
Hsp92II	CATG	5 cut(s)	223, 566, 694, 844, 878
HspAI	GCGC	1 cut(s)	549
Kzo9I	GATC	1 cut(s)	315
LmnI	GCTCC	2 cut(s)	445, 768
Lsp1109I	GCAGC	3 cut(s)	28, 331, 367
LweI	GCATC	1 cut(s)	582
MaeI	CTAG	1 cut(s)	846
MaeIII	GTNAC	2 cut(s)	191, 222
MalI	GATC	1 cut(s)	317
MboI	GATC	1 cut(s)	315
MboII	GAAGA	3 cut(s)	161, 258, 521
MhlI	GDGCHC	2 cut(s)	202, 271
MluCI	AATT	2 cut(s)	60, 556
MlyI	GAGTC	2 cut(s)	106, 680
MmeI	TCCRAC	2 cut(s)	500, 850
MnlI	CCTC	5 cut(s)	356, 424, 523, 618, 653
Mph1103I	ATGCAT	1 cut(s)	575
MseI	TTAA	1 cut(s)	879
MspI	CCGG	2 cut(s)	319, 706
MspR9I	CCNGG	3 cut(s)	320, 393, 852
Mva1269I	GAATGC	1 cut(s)	575
MvaI	CCWGG	2 cut(s)	393, 852
MwoI	GCNNNNNNNGC	7 cut(s)	216, 341, 431, 546, 751, 760, 806
NciI	CCSGG	1 cut(s)	320
NdeII	GATC	1 cut(s)	315
NlaIII	CATG	5 cut(s)	223, 566, 694, 844, 878
NlaIV	GGNNCC	3 cut(s)	324, 614, 861
NmeAIII	GCCGAG	1 cut(s)	847
NmuCI	GTSAC	1 cut(s)	222
NsiI	ATGCAT	1 cut(s)	575
NspI	RCATGY	2 cut(s)	223, 878
PasI	CCCWGGG	1 cut(s)	851
PciI	ACATGT	1 cut(s)	874
PctI	GAATGC	1 cut(s)	575
PfeI	GAWTC	2 cut(s)	280, 634
PinAI	ACCGGT	1 cut(s)	705
PkrI	GCNGC	3 cut(s)	18, 346, 382
PleI	GAGTC	2 cut(s)	106, 679
PpsI	GAGTC	2 cut(s)	106, 679
PpuMI	RGGWCCY	1 cut(s)	859
PscI	ACATGT	1 cut(s)	874
Psp5II	RGGWCCY	1 cut(s)	859
Psp6I	CCWGG	2 cut(s)	391, 850
PspGI	CCWGG	2 cut(s)	391, 850
PspN4I	GGNNCC	3 cut(s)	324, 614, 861
PspPI	GGNCC	1 cut(s)	859
PspPPI	RGGWCCY	1 cut(s)	859
PstI	CTGCAG	1 cut(s)	349
PstNI	CAGNNNCTG	1 cut(s)	785
SaqAI	TTAA	1 cut(s)	879
SatI	GCNGC	3 cut(s)	17, 345, 381
Sau3AI	GATC	1 cut(s)	315
Sau96I	GGNCC	1 cut(s)	859
SchI	GAGTC	2 cut(s)	106, 680
ScrFI	CCNGG	3 cut(s)	320, 393, 852
SduI	GDGCHC	2 cut(s)	202, 271
SfaNI	GCATC	1 cut(s)	582
SfcI	CTRYAG	1 cut(s)	345
SinI	GGWCC	1 cut(s)	859
Sse9I	AATT	2 cut(s)	60, 556
SsiI	CCGC	1 cut(s)	800
SspMI	CTAG	1 cut(s)	846
StyD4I	CCNGG	3 cut(s)	318, 391, 850
TaaI	ACNGT	4 cut(s)	103, 140, 197, 681
TaqI	TCGA	4 cut(s)	131, 576, 589, 639
TasI	AATT	2 cut(s)	60, 556
TfiI	GAWTC	2 cut(s)	280, 634
Tru1I	TTAA	1 cut(s)	879
Tru9I	TTAA	1 cut(s)	879
TscAI	CASTG	4 cut(s)	432, 493, 652, 811
TseFI	GTSAC	1 cut(s)	222
TseI	GCWGC	3 cut(s)	16, 344, 380
Tsp45I	GTSAC	1 cut(s)	222
TspDTI	ATGAA	1 cut(s)	534
TspRI	CASTG	4 cut(s)	432, 493, 652, 811
VneI	GTGCAC	1 cut(s)	198
VpaK11BI	GGWCC	1 cut(s)	859
XceI	RCATGY	2 cut(s)	223, 878
XspI	CTAG	1 cut(s)	846
Zsp2I	ATGCAT	1 cut(s)	575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.