FvH4_5g05210

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
3032461 .. 3036166
3706 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g05210.t1

Sequence Viewer

Length: 1143 bp
ATGGCCATCCGAGGCGTCGATTTCAAGTGGTACGATGGATTCTTCTTGTCGATGCTCGCCACCAGTGTAGTAATTGTGGCGATTAATTGGAAGCGGTACCATACTTGTACATATCCGTTGCATATATGGATCGTGGTTGATTACACTACAGTGTTTGTTTTTCGCTTGTTGATGTTTGTTGATAATGGACTGGCAGCTGGAATGGGATTGGATTTTGGGTGGCAGCAAAGATATGCTCGTTTCTGTGGAAGAGTAGTGGTCATTTCAATTCTTTCTCTGCTACTCTATCCATTTCTTTGGGCTTGGACGGTAATTGGGACTCTGTGGTTTAGAAGCTCGAAGGATTGCTTGCCTGAAGCTGGACAGAAATGGGGTTTCCTTATTTGGTTGCTTTTTAGTTACTGTGCACTGCTTTGCATTTCGTGCATGTCACTTGGGAAGTGGTTGACACGAAGACAGGCACACTTATTGCGTGCTCAACAAGGGATTCCTATATCAGAATTTGGGATTTTAGTTGATATGATCCGGGTGCCAGATTGGGCATTTGAAGCTGCGGGTCAAGAGGCAAGAGGAATGGGTCAAGAAGCTGCATACCAACCTGGACTTTACTTGACAACGGCACAGAGAGAAGCAGTGGAAGCACTCATTCAGGAGCTTCCAAAGTTCAGGTTGAAGGCCGTTCCAACGGATTGCAGTGAATGTCCAATCTGCTTAGAAGAGTTCTATGAAGGCAATGAGGTTCGGGGCCTACCGTGCGCTCACAACTTCCATGTAGAATGCATCGATGAGTGGCTTCGATTGAATGTGAAATGCCCTCGGTGCCGTTGCTCAGTCTTTCCCAATCTCGACCTCAGTGCTATATCCAATCTCCGTGCCGAGTCTGAACGGTCATCTGTCACGTTGACTGCCAACCGGTATGTTAGAGCCCAACCATCCAGTCAGAGCTATCTGCTGAGATTGCAAGGTGTGCTCCAGCCAGTCCATTCAGAAACTGCAAGCAATGACACAGACACTGCTTTGGCAACTGCCGAGAATGGGGATGTTGCCTCGTCTAGCCGGGATCCATTGAGCCAACGGCAGGTCCCTTCTGTTGGACATGTTATAGTTGTTGAGTCCGCCTCCTCTCCACAACAGCAACGATAG

Protein Analysis

381

Amino Acids

42.88

Weight (kDa)

6.65

Isoelectric Point (pI)

46.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 233 - 275 1.3e-14 Ring finger domain
zf-RING_11 PF17123 233 - 261 4e-10 RING-like zinc finger
zf-C3HC4_2 PF13923 233 - 274 5e-10 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 234 - 274 5.3e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 234 - 272 7.3e-08 RING-type zinc-finger
zf-rbx1 PF12678 234 - 275 1.8e-06 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012512)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1069
Acc65I GGTACC 1 cut(s) 96
AccB1I GGYRCC 3 cut(s) 96, 529, 819
AciI CCGC 3 cut(s) 94, 554, 1116
AclWI GGATC 4 cut(s) 137, 517, 1055, 1068
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 500
AcuI CTGAAG 1 cut(s) 375
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 3 cut(s) 32, 98, 109
AfiI CCNNNNNNNGG 4 cut(s) 359, 1035, 1078, 1091
AflIII ACRYGT 1 cut(s) 1096
AgeI ACCGGT 1 cut(s) 912
AgsI TTSAA 5 cut(s) 25, 267, 548, 673, 802
AjnI CCWGG 1 cut(s) 598
AleI CACNNNNGTG 1 cut(s) 149
AluBI AGCT 7 cut(s) 197, 336, 359, 551, 587, 655, 945
AluI AGCT 7 cut(s) 197, 336, 359, 551, 587, 655, 945
Alw21I GWGCWC 3 cut(s) 409, 478, 972
Alw44I GTGCAC 1 cut(s) 405
AlwI GGATC 4 cut(s) 137, 517, 1055, 1068
AlwNI CAGNNNCTG 2 cut(s) 992, 1013
AoxI GGCC 3 cut(s) 3, 675, 745
ApaLI GTGCAC 1 cut(s) 405
ApeKI GCWGC 4 cut(s) 194, 223, 551, 587
ApoI RAATTY 1 cut(s) 500
AseI ATTAAT 1 cut(s) 84
AsiGI ACCGGT 1 cut(s) 912
Asp718I GGTACC 1 cut(s) 96
AspLEI GCGC 1 cut(s) 758
AspS9I GGNCC 2 cut(s) 745, 1081
AsuC2I CCSGG 2 cut(s) 527, 1058
AvaII GGWCC 1 cut(s) 1081
BaeGI GKGCMC 1 cut(s) 409
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 1060
BanI GGYRCC 3 cut(s) 96, 529, 819
BanII GRGCYC 1 cut(s) 928
BbsI GAAGAC 1 cut(s) 460
Bbv12I GWGCWC 3 cut(s) 409, 478, 972
BbvI GCAGC 4 cut(s) 206, 235, 538, 574
BccI CCATC 3 cut(s) 14, 29, 940
BceAI ACGGC 4 cut(s) 633, 662, 807, 1091
BcgI CGANNNNNNTGC 2 cut(s) 836, 870
BciT130I CCWGG 1 cut(s) 600
BcnI CCSGG 2 cut(s) 527, 1058
BfaI CTAG 1 cut(s) 1053
BfmI CTRYAG 1 cut(s) 147
BfuAI ACCTGC 1 cut(s) 1069
BisI GCNGC 4 cut(s) 195, 224, 552, 588
BlsI GCNGC 4 cut(s) 196, 225, 553, 589
Bme1390I CCNGG 3 cut(s) 527, 600, 1058
Bme18I GGWCC 1 cut(s) 1081
BmgT120I GGNCC 2 cut(s) 745, 1081
BmiI GGNNCC 6 cut(s) 98, 531, 746, 821, 1062, 1083
BmrFI CCNGG 3 cut(s) 527, 600, 1058
BmsI GCATC 2 cut(s) 42, 789
BpiI GAAGAC 1 cut(s) 460
BplI GAGNNNNNCTC 2 cut(s) 1103, 1135
BpmI CTGGAG 1 cut(s) 956
BpuMI CCSGG 2 cut(s) 527, 1058
Bsa29I ATCGAT 1 cut(s) 783
BsaHI GRCGYC 1 cut(s) 15
BsaJI CCNNGG 2 cut(s) 10, 815
BsaWI WCCGGW 1 cut(s) 912
Bsc4I CCNNNNNNNGG 4 cut(s) 359, 1035, 1078, 1091
Bse118I RCCGGY 1 cut(s) 912
Bse1I ACTGG 4 cut(s) 63, 195, 936, 977
Bse3DI GCAATG 2 cut(s) 739, 1006
BseBI CCWGG 1 cut(s) 600
BseCI ATCGAT 1 cut(s) 783
BseDI CCNNGG 2 cut(s) 10, 815
BseGI GGATG 3 cut(s) 6, 932, 1045
BseLI CCNNNNNNNGG 4 cut(s) 359, 1035, 1078, 1091
BseMI GCAATG 2 cut(s) 739, 1006
BseMII CTCAG 3 cut(s) 843, 865, 944
BseNI ACTGG 4 cut(s) 63, 195, 936, 977
BseRI GAGGAG 1 cut(s) 1111
BseSI GKGCMC 1 cut(s) 409
BseXI GCAGC 4 cut(s) 206, 235, 538, 574
BshFI GGCC 3 cut(s) 5, 677, 747
BshNI GGYRCC 3 cut(s) 96, 529, 819
BshTI ACCGGT 1 cut(s) 912
BshVI ATCGAT 1 cut(s) 783
BsiHKAI GWGCWC 3 cut(s) 409, 478, 972
BsiSI CCGG 3 cut(s) 526, 913, 1057
BslFI GGGAC 2 cut(s) 331, 1067
BslI CCNNNNNNNGG 4 cut(s) 359, 1035, 1078, 1091
BsmFI GGGAC 2 cut(s) 331, 1067
BsmI GAATGC 1 cut(s) 782
BsnI GGCC 3 cut(s) 5, 677, 747
Bsp1286I GDGCHC 4 cut(s) 409, 478, 928, 972
Bsp1407I TGTACA 1 cut(s) 107
Bsp143I GATC 3 cut(s) 129, 522, 1060
BspACI CCGC 3 cut(s) 94, 554, 1116
BspANI GGCC 3 cut(s) 5, 677, 747
BspCNI CTCAG 3 cut(s) 842, 864, 945
BspDI ATCGAT 1 cut(s) 783
BspLI GGNNCC 6 cut(s) 98, 531, 746, 821, 1062, 1083
BspMI ACCTGC 1 cut(s) 1069
BspPI GGATC 4 cut(s) 137, 517, 1055, 1068
BspT107I GGYRCC 3 cut(s) 96, 529, 819
BsrDI GCAATG 2 cut(s) 739, 1006
BsrFI RCCGGY 1 cut(s) 912
BsrGI TGTACA 1 cut(s) 107
BsrI ACTGG 4 cut(s) 63, 195, 936, 977
BssAI RCCGGY 1 cut(s) 912
BssECI CCNNGG 2 cut(s) 10, 815
BssMI GATC 3 cut(s) 129, 522, 1060
BssNI GRCGYC 1 cut(s) 15
Bst2UI CCWGG 1 cut(s) 600
Bst4CI ACNGT 5 cut(s) 151, 310, 404, 753, 888
Bst6I CTCTTC 2 cut(s) 244, 711
BstACI GRCGYC 1 cut(s) 15
BstAPI GCANNNNNTGC 2 cut(s) 423, 967
BstAUI TGTACA 1 cut(s) 107
BstC8I GCNNGC 4 cut(s) 57, 350, 474, 997
BstDEI CTNAG 4 cut(s) 712, 829, 851, 953
BstF5I GGATG 3 cut(s) 6, 932, 1045
BstHHI GCGC 1 cut(s) 758
BstKTI GATC 3 cut(s) 132, 525, 1063
BstMBI GATC 3 cut(s) 129, 522, 1060
BstMWI GCNNNNNNNGC 7 cut(s) 423, 548, 638, 753, 819, 958, 967
BstNI CCWGG 1 cut(s) 600
BstNSI RCATGY 2 cut(s) 430, 1100
BstSCI CCNGG 3 cut(s) 525, 598, 1056
BstSFI CTRYAG 1 cut(s) 147
BstSLI GKGCMC 1 cut(s) 409
BstV1I GCAGC 4 cut(s) 206, 235, 538, 574
BstV2I GAAGAC 1 cut(s) 460
BstX2I RGATCY 1 cut(s) 1060
BstXI CCANNNNNNTGG 1 cut(s) 297
BstYI RGATCY 1 cut(s) 1060
Bsu15I ATCGAT 1 cut(s) 783
BsuRI GGCC 3 cut(s) 5, 677, 747
BsuTUI ATCGAT 1 cut(s) 783
BtsCI GGATG 3 cut(s) 6, 932, 1045
BtsI GCAGTG 4 cut(s) 407, 639, 700, 1011
BtsIMutI CAGTG 7 cut(s) 70, 156, 407, 639, 700, 859, 1011
BveI ACCTGC 1 cut(s) 1069
Cac8I GCNNGC 4 cut(s) 57, 350, 474, 997
CaiI CAGNNNCTG 2 cut(s) 992, 1013
CfoI GCGC 1 cut(s) 758
Cfr10I RCCGGY 1 cut(s) 912
Cfr13I GGNCC 2 cut(s) 745, 1081
ClaI ATCGAT 1 cut(s) 783
CseI GACGC 1 cut(s) 4
Csp6I GTAC 3 cut(s) 31, 97, 108
CspAI ACCGGT 1 cut(s) 912
CviAII CATG 3 cut(s) 427, 770, 1097
CviQI GTAC 3 cut(s) 31, 97, 108
DdeI CTNAG 4 cut(s) 712, 829, 851, 953
DpnI GATC 3 cut(s) 131, 524, 1062
DpnII GATC 3 cut(s) 129, 522, 1060
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 244, 711
EarI CTCTTC 2 cut(s) 244, 711
EciI GGCGGA 1 cut(s) 1105
Eco24I GRGCYC 1 cut(s) 928
Eco47I GGWCC 1 cut(s) 1081
Eco57I CTGAAG 1 cut(s) 375
EcoO109I RGGNCCY 2 cut(s) 745, 1081
EcoRII CCWGG 1 cut(s) 598
EcoT22I ATGCAT 1 cut(s) 782
EcoT38I GRGCYC 1 cut(s) 928
FaeI CATG 3 cut(s) 430, 773, 1100
FalI AAGNNNNNCTT 2 cut(s) 332, 364
FaqI GGGAC 2 cut(s) 331, 1067
FatI CATG 3 cut(s) 426, 769, 1096
FauI CCCGC 1 cut(s) 547
Fnu4HI GCNGC 4 cut(s) 195, 224, 552, 588
FokI GGATG 2 cut(s) 919, 1052
FriOI GRGCYC 1 cut(s) 928
Fsp4HI GCNGC 4 cut(s) 195, 224, 552, 588
FspBI CTAG 1 cut(s) 1053
GlaI GCGC 1 cut(s) 757
GluI GCNGC 4 cut(s) 195, 224, 552, 588
GsuI CTGGAG 1 cut(s) 956
HaeIII GGCC 3 cut(s) 5, 677, 747
HapII CCGG 3 cut(s) 526, 913, 1057
HgaI GACGC 1 cut(s) 4
HhaI GCGC 1 cut(s) 758
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 3 cut(s) 430, 773, 1100
Hin6I GCGC 1 cut(s) 756
HinP1I GCGC 1 cut(s) 756
HincII GTYRAC 2 cut(s) 447, 903
HindII GTYRAC 2 cut(s) 447, 903
HinfI GANTC 5 cut(s) 39, 319, 487, 878, 1112
HpaII CCGG 3 cut(s) 526, 913, 1057
Hpy166II GTNNAC 3 cut(s) 407, 447, 903
Hpy188I TCNGA 5 cut(s) 11, 499, 883, 942, 988
Hpy188III TCNNGA 4 cut(s) 560, 581, 650, 845
Hpy8I GTNNAC 3 cut(s) 407, 447, 903
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 4 cut(s) 334, 667, 722, 1095
HpyCH4III ACNGT 5 cut(s) 151, 310, 404, 753, 888
HpyCH4IV ACGT 1 cut(s) 899
HpyCH4V TGCA 9 cut(s) 121, 407, 417, 426, 590, 693, 780, 961, 995
HpyF10VI GCNNNNNNNGC 7 cut(s) 423, 548, 638, 753, 819, 958, 967
HpyF3I CTNAG 4 cut(s) 712, 829, 851, 953
HpySE526I ACGT 1 cut(s) 899
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 3 cut(s) 430, 773, 1100
HspAI GCGC 1 cut(s) 756
KpnI GGTACC 1 cut(s) 100
Kzo9I GATC 3 cut(s) 129, 522, 1060
LmnI GCTCC 2 cut(s) 652, 975
Lsp1109I GCAGC 4 cut(s) 206, 235, 538, 574
LweI GCATC 2 cut(s) 42, 789
MaeI CTAG 1 cut(s) 1053
MaeII ACGT 1 cut(s) 899
MaeIII GTNAC 3 cut(s) 398, 429, 895
MalI GATC 3 cut(s) 131, 524, 1062
MboI GATC 3 cut(s) 129, 522, 1060
MboII GAAGA 4 cut(s) 34, 261, 465, 728
MflI RGATCY 1 cut(s) 1060
MhlI GDGCHC 4 cut(s) 409, 478, 928, 972
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 72, 85, 267, 312, 500
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 313, 887, 1121
MmeI TCCRAC 2 cut(s) 707, 1072
MnlI CCTC 9 cut(s) 5, 556, 563, 730, 825, 860, 1057, 1129, 1132
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 782
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 84
MslI CAYNNNNRTG 1 cut(s) 149
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 197
MspI CCGG 3 cut(s) 526, 913, 1057
MspR9I CCNGG 3 cut(s) 527, 600, 1058
Mva1269I GAATGC 1 cut(s) 782
MvaI CCWGG 1 cut(s) 600
MwoI GCNNNNNNNGC 7 cut(s) 423, 548, 638, 753, 819, 958, 967
NciI CCSGG 2 cut(s) 527, 1058
NdeII GATC 3 cut(s) 129, 522, 1060
NlaIII CATG 3 cut(s) 430, 773, 1100
NlaIV GGNNCC 6 cut(s) 98, 531, 746, 821, 1062, 1083
NmeAIII GCCGAG 2 cut(s) 901, 1054
NmuCI GTSAC 2 cut(s) 429, 895
NsiI ATGCAT 1 cut(s) 782
NspI RCATGY 2 cut(s) 430, 1100
OliI CACNNNNGTG 1 cut(s) 149
PciI ACATGT 1 cut(s) 1096
PctI GAATGC 1 cut(s) 782
PfeI GAWTC 2 cut(s) 39, 487
PinAI ACCGGT 1 cut(s) 912
PkrI GCNGC 4 cut(s) 196, 225, 553, 589
PleI GAGTC 3 cut(s) 313, 886, 1120
PpsI GAGTC 3 cut(s) 313, 886, 1120
PpuMI RGGWCCY 1 cut(s) 1081
PscI ACATGT 1 cut(s) 1096
PshBI ATTAAT 1 cut(s) 84
Psp5II RGGWCCY 1 cut(s) 1081
Psp6I CCWGG 1 cut(s) 598
PspGI CCWGG 1 cut(s) 598
PspN4I GGNNCC 6 cut(s) 98, 531, 746, 821, 1062, 1083
PspPI GGNCC 2 cut(s) 745, 1081
PspPPI RGGWCCY 1 cut(s) 1081
PstNI CAGNNNCTG 2 cut(s) 992, 1013
PsuI RGATCY 1 cut(s) 1060
PvuII CAGCTG 1 cut(s) 197
RsaI GTAC 3 cut(s) 32, 98, 109
RsaNI GTAC 3 cut(s) 31, 97, 108
RseI CAYNNNNRTG 1 cut(s) 149
SaqAI TTAA 1 cut(s) 84
SatI GCNGC 4 cut(s) 195, 224, 552, 588
Sau3AI GATC 3 cut(s) 129, 522, 1060
Sau96I GGNCC 2 cut(s) 745, 1081
SchI GAGTC 3 cut(s) 313, 887, 1121
ScrFI CCNGG 3 cut(s) 527, 600, 1058
SduI GDGCHC 4 cut(s) 409, 478, 928, 972
SfaNI GCATC 2 cut(s) 42, 789
SfcI CTRYAG 1 cut(s) 147
SinI GGWCC 1 cut(s) 1081
SmiMI CAYNNNNRTG 1 cut(s) 149
Sse9I AATT 5 cut(s) 72, 85, 267, 312, 500
SsiI CCGC 3 cut(s) 94, 554, 1116
SspMI CTAG 1 cut(s) 1053
StyD4I CCNGG 3 cut(s) 525, 598, 1056
TaaI ACNGT 5 cut(s) 151, 310, 404, 753, 888
TaiI ACGT 1 cut(s) 902
TaqI TCGA 6 cut(s) 18, 50, 338, 783, 796, 846
TasI AATT 5 cut(s) 72, 85, 267, 312, 500
TatI WGTACW 1 cut(s) 107
TfiI GAWTC 2 cut(s) 39, 487
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TscAI CASTG 7 cut(s) 70, 156, 414, 639, 700, 859, 1018
TseFI GTSAC 2 cut(s) 429, 895
TseI GCWGC 4 cut(s) 194, 223, 551, 587
Tsp45I GTSAC 2 cut(s) 429, 895
TspDTI ATGAA 1 cut(s) 741
TspGWI ACGGA 3 cut(s) 105, 701, 860
TspRI CASTG 7 cut(s) 70, 156, 414, 639, 700, 859, 1018
VneI GTGCAC 1 cut(s) 405
VpaK11BI GGWCC 1 cut(s) 1081
VspI ATTAAT 1 cut(s) 84
XapI RAATTY 1 cut(s) 500
XceI RCATGY 2 cut(s) 430, 1100
XspI CTAG 1 cut(s) 1053
Zsp2I ATGCAT 1 cut(s) 782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.