MD06G1175600.v1.1

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Reverse (-)
31512524 .. 31515994
3471 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1175600.v1.1.491

Sequence Viewer

Length: 1152 bp
ATGGCCATCCGAGGCGTCGATTTCAAGTGGTACGATGGGTTCTTCTTGTCGATGCTCGCGACGAGCGTAGTGATTGTTGGAATTAATTGGAAGCGGTACCATACTTGTGCGTACCCGTTGCATATATGGATCGTGGTTGATTACACTACTGTGTTTGTTTTTCGGATGTTGATGTTTGTGGATAATGGGCTTGCCTCTGGAATGGGTTTGGATTTTGGGTGGCAGCAAAGATATGCTCGTTTCTGCGGAAGAGTAGTGGTCCTTTCGATTCTTTCTCTGCTGCTTTATCCATTTCTTTGGACTTGGACAGTGCTTGGTACACTGTGGTTTCACAAATCGAAGGACTGTTTGCCTGAAAGTGGTCAGAAGTGGGGTTTTCTCATTTGGTTACTTTTTAGCTACTGTGCACTACTTTGCATTGCTTGCATGTCAATTGGGAAGTGGTTGACACGAAGGGAGGCACACTTACTGCGAGCTCAGCAAGGGATTCCTGTGTCAGAATATGGGGTTTTGGTTGATATGATTCGGGTGCCAGATTGGGCATTTGAAGCTGCCGGTCAAGAAACAAGAGGGATGGGCCAAGATGCTGCTGCATTCCAACCTGGACTTTACTTGACTCAAGCACAGAGAGAAGCAGTTGAAGCACTCATTCAGGAGCTTCCCAAGTTCAGACTGAAGGCTGTTCCAACTGATTGCAGTGAATGTCCGATCTGCTTGGAAGAGTTTCATGTAGGCAACGAGGTTCGCGGCCTGCCTTGCGCTCACAATTTCCATGTAGAATGCATCGATGAGTGGCTTCGACTGAATGTGAAATGTCCCAGATGCCGTTGCTCAGTCTTCCCAAATCTCGACCTCAGTGCTATATCCAATCTCCGTCCTGACTCTGAGCGTTCATCTCTCAGTGTGTTGACAACCAACCGGTATGTGAGAACCCAACCTGATAGTCAGAGGCATTTGTTGAGGTTGCAGGGAGCATTCTGCCCAGTCCGTACAGAAAATGCAGGTGCAGGCAATGAGGCAGACGCTGCTTTGGAAACTGCTGAGGAAGGGGGTATTGCTCATTCATCTACTCGAGATCTTTCAAGCCCGAGGGCGGGACCTTCCATTGAACATATCATCGTGGTCGAGTCCGCCTCCCGGCAACAACAATAG

Protein Analysis

384

Amino Acids

43.23

Weight (kDa)

6.55

Isoelectric Point (pI)

41.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 234 - 276 2.6e-14 Ring finger domain
zf-RING_11 PF17123 234 - 262 1e-09 RING-like zinc finger
zf-C3HC4_2 PF13923 234 - 275 1.4e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 235 - 273 7.9e-08 RING-type zinc-finger
zf-C3HC4 PF00097 235 - 275 1.3e-07 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012512)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 992
Acc36I ACCTGC 1 cut(s) 992
Acc65I GGTACC 1 cut(s) 96
AccB1I GGYRCC 2 cut(s) 96, 529
AccII CGCG 2 cut(s) 59, 747
AciI CCGC 5 cut(s) 94, 246, 747, 1094, 1131
AclWI GGATC 1 cut(s) 137
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 695
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 5 cut(s) 32, 98, 113, 319, 991
AfiI CCNNNNNNNGG 4 cut(s) 359, 1093, 1094, 1137
AgeI ACCGGT 1 cut(s) 918
AgsI TTSAA 5 cut(s) 25, 548, 641, 1083, 1109
AjnI CCWGG 1 cut(s) 601
AleI CACNNNNGTG 1 cut(s) 149
AluBI AGCT 4 cut(s) 399, 476, 551, 658
AluI AGCT 4 cut(s) 399, 476, 551, 658
Alw21I GWGCWC 2 cut(s) 409, 478
Alw44I GTGCAC 1 cut(s) 405
AlwI GGATC 1 cut(s) 137
AlwNI CAGNNNCTG 1 cut(s) 1025
Ama87I CYCGRG 2 cut(s) 1071, 1087
AoxI GGCC 3 cut(s) 3, 577, 748
ApaLI GTGCAC 1 cut(s) 405
ApeKI GCWGC 6 cut(s) 223, 280, 551, 587, 590, 1025
AseI ATTAAT 1 cut(s) 84
AsiGI ACCGGT 1 cut(s) 918
Asp700I GAANNNNTTC 1 cut(s) 723
Asp718I GGTACC 1 cut(s) 96
AspLEI GCGC 1 cut(s) 761
AspS9I GGNCC 3 cut(s) 259, 577, 1097
AsuC2I CCSGG 1 cut(s) 1138
AvaI CYCGRG 2 cut(s) 1071, 1087
AvaII GGWCC 2 cut(s) 259, 1097
BaeGI GKGCMC 1 cut(s) 409
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 96, 529
BanII GRGCYC 1 cut(s) 478
BbsI GAAGAC 1 cut(s) 829
Bbv12I GWGCWC 2 cut(s) 409, 478
BbvCI CCTCAGC 1 cut(s) 1041
BbvI GCAGC 6 cut(s) 235, 267, 538, 574, 577, 1012
BccI CCATC 3 cut(s) 14, 29, 568
BceAI ACGGC 1 cut(s) 810
BcgI CGANNNNNNTGC 2 cut(s) 839, 873
BciT130I CCWGG 1 cut(s) 603
BcnI CCSGG 1 cut(s) 1138
BfuAI ACCTGC 1 cut(s) 992
BglII AGATCT 1 cut(s) 1075
BisI GCNGC 7 cut(s) 224, 281, 552, 588, 591, 748, 1026
BlpI GCTNAGC 1 cut(s) 477
BlsI GCNGC 7 cut(s) 225, 282, 553, 589, 592, 749, 1027
Bme1390I CCNGG 2 cut(s) 603, 1138
Bme18I GGWCC 2 cut(s) 259, 1097
BmeT110I CYCGRG 2 cut(s) 1071, 1087
BmgT120I GGNCC 3 cut(s) 259, 577, 1097
BmiI GGNNCC 3 cut(s) 98, 531, 1098
BmrFI CCNGG 2 cut(s) 603, 1138
BmrI ACTGGG 1 cut(s) 977
BmsI GCATC 4 cut(s) 42, 574, 792, 812
BmuI ACTGGG 1 cut(s) 977
BpiI GAAGAC 1 cut(s) 829
BplI GAGNNNNNCTC 2 cut(s) 1118, 1150
Bpu10I CCTNAGC 1 cut(s) 1041
Bpu1102I GCTNAGC 1 cut(s) 477
BpuEI CTTGAG 1 cut(s) 603
BpuMI CCSGG 1 cut(s) 1138
Bsa29I ATCGAT 1 cut(s) 786
BsaHI GRCGYC 1 cut(s) 15
BsaJI CCNNGG 2 cut(s) 10, 1088
BsaWI WCCGGW 1 cut(s) 918
Bsc4I CCNNNNNNNGG 4 cut(s) 359, 1093, 1094, 1137
Bse118I RCCGGY 2 cut(s) 554, 918
Bse1I ACTGG 1 cut(s) 983
Bse3DI GCAATG 2 cut(s) 417, 1018
BseBI CCWGG 1 cut(s) 603
BseCI ATCGAT 1 cut(s) 786
BseDI CCNNGG 2 cut(s) 10, 1088
BseGI GGATG 3 cut(s) 6, 171, 579
BseLI CCNNNNNNNGG 4 cut(s) 359, 1093, 1094, 1137
BseMI GCAATG 2 cut(s) 417, 1018
BseMII CTCAG 6 cut(s) 491, 846, 868, 876, 913, 1032
BseNI ACTGG 1 cut(s) 983
BseSI GKGCMC 1 cut(s) 409
BseXI GCAGC 6 cut(s) 235, 267, 538, 574, 577, 1012
BsgI GTGCAG 1 cut(s) 1026
Bsh1236I CGCG 2 cut(s) 59, 747
BshFI GGCC 3 cut(s) 5, 579, 750
BshNI GGYRCC 2 cut(s) 96, 529
BshTI ACCGGT 1 cut(s) 918
BshVI ATCGAT 1 cut(s) 786
BsiHKAI GWGCWC 2 cut(s) 409, 478
BsiHKCI CYCGRG 2 cut(s) 1071, 1087
BsiSI CCGG 3 cut(s) 555, 919, 1138
BslFI GGGAC 2 cut(s) 801, 1110
BslI CCNNNNNNNGG 4 cut(s) 359, 1093, 1094, 1137
BsmFI GGGAC 2 cut(s) 801, 1110
BsmI GAATGC 3 cut(s) 593, 785, 974
BsnI GGCC 3 cut(s) 5, 579, 750
BsoBI CYCGRG 2 cut(s) 1071, 1087
Bsp1286I GDGCHC 2 cut(s) 409, 478
Bsp143I GATC 3 cut(s) 129, 708, 1075
Bsp1720I GCTNAGC 1 cut(s) 477
Bsp68I TCGCGA 1 cut(s) 59
BspACI CCGC 5 cut(s) 94, 246, 747, 1094, 1131
BspANI GGCC 3 cut(s) 5, 579, 750
BspCNI CTCAG 6 cut(s) 490, 845, 867, 877, 912, 1033
BspDI ATCGAT 1 cut(s) 786
BspFNI CGCG 2 cut(s) 59, 747
BspLI GGNNCC 3 cut(s) 98, 531, 1098
BspMI ACCTGC 1 cut(s) 992
BspPI GGATC 1 cut(s) 137
BspT107I GGYRCC 2 cut(s) 96, 529
BsrDI GCAATG 2 cut(s) 417, 1018
BsrFI RCCGGY 2 cut(s) 554, 918
BsrI ACTGG 1 cut(s) 983
BssAI RCCGGY 2 cut(s) 554, 918
BssECI CCNNGG 2 cut(s) 10, 1088
BssMI GATC 3 cut(s) 129, 708, 1075
BssNI GRCGYC 1 cut(s) 15
Bst2UI CCWGG 1 cut(s) 603
Bst4CI ACNGT 5 cut(s) 151, 310, 324, 347, 404
Bst6I CTCTTC 2 cut(s) 244, 714
BstACI GRCGYC 1 cut(s) 15
BstAPI GCANNNNNTGC 2 cut(s) 423, 1025
BstC8I GCNNGC 6 cut(s) 57, 192, 424, 474, 752, 1009
BstDEI CTNAG 6 cut(s) 477, 832, 854, 885, 899, 1041
BstF5I GGATG 3 cut(s) 6, 171, 579
BstFNI CGCG 2 cut(s) 59, 747
BstHHI GCGC 1 cut(s) 761
BstKTI GATC 3 cut(s) 132, 711, 1078
BstMBI GATC 3 cut(s) 129, 708, 1075
BstMWI GCNNNNNNNGC 6 cut(s) 423, 478, 548, 641, 756, 1025
BstNI CCWGG 1 cut(s) 603
BstNSI RCATGY 1 cut(s) 430
BstSCI CCNGG 2 cut(s) 601, 1136
BstSLI GKGCMC 1 cut(s) 409
BstUI CGCG 2 cut(s) 59, 747
BstV1I GCAGC 6 cut(s) 235, 267, 538, 574, 577, 1012
BstV2I GAAGAC 1 cut(s) 829
BstX2I RGATCY 1 cut(s) 1075
BstXI CCANNNNNNTGG 1 cut(s) 297
BstYI RGATCY 1 cut(s) 1075
Bsu15I ATCGAT 1 cut(s) 786
BsuRI GGCC 3 cut(s) 5, 579, 750
BsuTUI ATCGAT 1 cut(s) 786
BtsCI GGATG 3 cut(s) 6, 171, 579
BtsI GCAGTG 1 cut(s) 703
BtsIMutI CAGTG 5 cut(s) 315, 320, 703, 862, 907
BtuMI TCGCGA 1 cut(s) 59
BveI ACCTGC 1 cut(s) 992
Cac8I GCNNGC 6 cut(s) 57, 192, 424, 474, 752, 1009
CaiI CAGNNNCTG 1 cut(s) 1025
CfoI GCGC 1 cut(s) 761
Cfr10I RCCGGY 2 cut(s) 554, 918
Cfr13I GGNCC 3 cut(s) 259, 577, 1097
ClaI ATCGAT 1 cut(s) 786
CseI GACGC 2 cut(s) 4, 1031
Csp6I GTAC 5 cut(s) 31, 97, 112, 318, 990
CspAI ACCGGT 1 cut(s) 918
CviAII CATG 3 cut(s) 427, 728, 773
CviQI GTAC 5 cut(s) 31, 97, 112, 318, 990
DdeI CTNAG 6 cut(s) 477, 832, 854, 885, 899, 1041
DpnI GATC 3 cut(s) 131, 710, 1077
DpnII GATC 3 cut(s) 129, 708, 1075
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 244, 714
EarI CTCTTC 2 cut(s) 244, 714
EciI GGCGGA 1 cut(s) 1120
Ecl136II GAGCTC 1 cut(s) 476
Eco24I GRGCYC 1 cut(s) 478
Eco47I GGWCC 2 cut(s) 259, 1097
Eco53kI GAGCTC 1 cut(s) 476
Eco57I CTGAAG 1 cut(s) 695
Eco88I CYCGRG 2 cut(s) 1071, 1087
EcoICRI GAGCTC 1 cut(s) 476
EcoO109I RGGNCCY 1 cut(s) 1097
EcoRII CCWGG 1 cut(s) 601
EcoT22I ATGCAT 1 cut(s) 785
EcoT38I GRGCYC 1 cut(s) 478
FaeI CATG 3 cut(s) 430, 731, 776
FaqI GGGAC 2 cut(s) 801, 1110
FatI CATG 3 cut(s) 426, 727, 772
FauI CCCGC 1 cut(s) 1087
Fnu4HI GCNGC 7 cut(s) 224, 281, 552, 588, 591, 748, 1026
FokI GGATG 2 cut(s) 178, 586
FriOI GRGCYC 1 cut(s) 478
Fsp4HI GCNGC 7 cut(s) 224, 281, 552, 588, 591, 748, 1026
GlaI GCGC 1 cut(s) 760
GluI GCNGC 7 cut(s) 224, 281, 552, 588, 591, 748, 1026
HaeIII GGCC 3 cut(s) 5, 579, 750
HapII CCGG 3 cut(s) 555, 919, 1138
HgaI GACGC 2 cut(s) 4, 1031
HhaI GCGC 1 cut(s) 761
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 3 cut(s) 430, 731, 776
Hin6I GCGC 1 cut(s) 759
HinP1I GCGC 1 cut(s) 759
HincII GTYRAC 2 cut(s) 447, 909
HindII GTYRAC 2 cut(s) 447, 909
HinfI GANTC 6 cut(s) 268, 487, 523, 616, 881, 1127
HpaII CCGG 3 cut(s) 555, 919, 1138
Hpy166II GTNNAC 4 cut(s) 320, 407, 447, 909
Hpy188I TCNGA 8 cut(s) 11, 165, 366, 499, 671, 708, 886, 948
Hpy188III TCNNGA 7 cut(s) 58, 198, 560, 653, 848, 878, 1073
Hpy8I GTNNAC 4 cut(s) 320, 407, 447, 909
Hpy99I CGWCG 2 cut(s) 20, 64
HpyAV CCTTC 5 cut(s) 334, 447, 670, 1040, 1110
HpyCH4III ACNGT 5 cut(s) 151, 310, 324, 347, 404
HpyF10VI GCNNNNNNNGC 6 cut(s) 423, 478, 548, 641, 756, 1025
HpyF3I CTNAG 6 cut(s) 477, 832, 854, 885, 899, 1041
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 3 cut(s) 430, 731, 776
HspAI GCGC 1 cut(s) 759
KpnI GGTACC 1 cut(s) 100
Kzo9I GATC 3 cut(s) 129, 708, 1075
LmnI GCTCC 2 cut(s) 655, 971
Lsp1109I GCAGC 6 cut(s) 235, 267, 538, 574, 577, 1012
LweI GCATC 4 cut(s) 42, 574, 792, 812
MaeIII GTNAC 1 cut(s) 387
MalI GATC 3 cut(s) 131, 710, 1077
MboI GATC 3 cut(s) 129, 708, 1075
MboII GAAGA 4 cut(s) 34, 261, 731, 829
MfeI CAATTG 1 cut(s) 432
MflI RGATCY 1 cut(s) 1075
MhlI GDGCHC 2 cut(s) 409, 478
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 81, 85, 432, 766
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 610, 875, 1136
MmeI TCCRAC 3 cut(s) 58, 622, 710
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 785
MroXI GAANNNNTTC 1 cut(s) 723
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 84
MslI CAYNNNNRTG 2 cut(s) 105, 149
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 3 cut(s) 555, 919, 1138
MspR9I CCNGG 2 cut(s) 603, 1138
MunI CAATTG 1 cut(s) 432
Mva1269I GAATGC 3 cut(s) 593, 785, 974
MvaI CCWGG 1 cut(s) 603
MvnI CGCG 2 cut(s) 59, 747
MwoI GCNNNNNNNGC 6 cut(s) 423, 478, 548, 641, 756, 1025
NciI CCSGG 1 cut(s) 1138
NdeII GATC 3 cut(s) 129, 708, 1075
NlaIII CATG 3 cut(s) 430, 731, 776
NlaIV GGNNCC 3 cut(s) 98, 531, 1098
NruI TCGCGA 1 cut(s) 59
NsiI ATGCAT 1 cut(s) 785
NspI RCATGY 1 cut(s) 430
OliI CACNNNNGTG 1 cut(s) 149
PaeR7I CTCGAG 1 cut(s) 1071
PaqCI CACCTGC 1 cut(s) 992
PcsI WCGNNNNNNNCGW 2 cut(s) 56, 63
PctI GAATGC 3 cut(s) 593, 785, 974
PdmI GAANNNNTTC 1 cut(s) 723
PfeI GAWTC 3 cut(s) 268, 487, 523
PinAI ACCGGT 1 cut(s) 918
PkrI GCNGC 7 cut(s) 225, 282, 553, 589, 592, 749, 1027
PleI GAGTC 3 cut(s) 610, 875, 1135
PpsI GAGTC 3 cut(s) 610, 875, 1135
PpuMI RGGWCCY 1 cut(s) 1097
PshBI ATTAAT 1 cut(s) 84
Psp124BI GAGCTC 1 cut(s) 478
Psp5II RGGWCCY 1 cut(s) 1097
Psp6I CCWGG 1 cut(s) 601
PspGI CCWGG 1 cut(s) 601
PspN4I GGNNCC 3 cut(s) 98, 531, 1098
PspPI GGNCC 3 cut(s) 259, 577, 1097
PspPPI RGGWCCY 1 cut(s) 1097
PsrI GAACNNNNNNTAC 2 cut(s) 23, 55
PstNI CAGNNNCTG 1 cut(s) 1025
PsuI RGATCY 1 cut(s) 1075
RruI TCGCGA 1 cut(s) 59
RsaI GTAC 5 cut(s) 32, 98, 113, 319, 991
RsaNI GTAC 5 cut(s) 31, 97, 112, 318, 990
RseI CAYNNNNRTG 2 cut(s) 105, 149
SacI GAGCTC 1 cut(s) 478
SaqAI TTAA 1 cut(s) 84
SatI GCNGC 7 cut(s) 224, 281, 552, 588, 591, 748, 1026
Sau3AI GATC 3 cut(s) 129, 708, 1075
Sau96I GGNCC 3 cut(s) 259, 577, 1097
SchI GAGTC 3 cut(s) 610, 875, 1136
ScrFI CCNGG 2 cut(s) 603, 1138
SduI GDGCHC 2 cut(s) 409, 478
SfaNI GCATC 4 cut(s) 42, 574, 792, 812
Sfr274I CTCGAG 1 cut(s) 1071
SinI GGWCC 2 cut(s) 259, 1097
SlaI CTCGAG 1 cut(s) 1071
SmiMI CAYNNNNRTG 2 cut(s) 105, 149
SmlI CTYRAG 2 cut(s) 618, 1071
SmoI CTYRAG 2 cut(s) 618, 1071
Sse9I AATT 4 cut(s) 81, 85, 432, 766
SsiI CCGC 5 cut(s) 94, 246, 747, 1094, 1131
SstI GAGCTC 1 cut(s) 478
StyD4I CCNGG 2 cut(s) 601, 1136
TaaI ACNGT 5 cut(s) 151, 310, 324, 347, 404
TaqI TCGA 9 cut(s) 18, 50, 266, 338, 786, 799, 849, 1072, 1125
TasI AATT 4 cut(s) 81, 85, 432, 766
TauI GCSGC 1 cut(s) 750
TfiI GAWTC 3 cut(s) 268, 487, 523
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TscAI CASTG 5 cut(s) 315, 327, 703, 862, 907
TseI GCWGC 6 cut(s) 223, 280, 551, 587, 590, 1025
TspDTI ATGAA 3 cut(s) 716, 882, 1053
TspGWI ACGGA 2 cut(s) 863, 977
TspRI CASTG 5 cut(s) 315, 327, 703, 862, 907
VneI GTGCAC 1 cut(s) 405
VpaK11BI GGWCC 2 cut(s) 259, 1097
VspI ATTAAT 1 cut(s) 84
XceI RCATGY 1 cut(s) 430
XhoI CTCGAG 1 cut(s) 1071
XmnI GAANNNNTTC 1 cut(s) 723
Zsp2I ATGCAT 1 cut(s) 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.