AT3G48080

lipase class 3 family protein disease resistance protein-related

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
17752463 .. 17755190
2728 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G48080.1

Sequence Viewer

Length: 1890 bp
ATGGCGTTTGAAGCTCTTACGGGAGTCAACGGTGATCTAGTCACCATATCATGGATGGCGTCGAAGGGAGCTAACCAAACGGAGCACTATCTCAAAGAAGAAGTAGGAGGAACCGTTTTTTTCGCCTTCCGAGCATCTTTCTCGTCGGAAGATTTGTTCGCTACGGAGAATACATCTCCCTTTGGAGAAATAAAGATGAAGCGTAATCAATTTCCTTGTATGAGAAGCATCGGCAACGACGTTGACACTACTGTTAACGAAGCTTTCCTCAAGTCACTTGAAGTTCTCATTGGTCCAAGAACCTCATTTCATGCTTCTGTGCAAAGCGCGGTTGATAGAAAACAACAGGTTGTGTTCACAGGACATTCTTTCGGAGGCGCAACTGCAATTCTAGCAACAGTTTGGTATTTGGAGACATACTTCATACGTGACGCCTATGCTGCCCCTGAGCCTCGTTGTGTGACATTTGGAGCTCCTTTGGTTGGTGACTATATCTTTAAACACGCGCTTGGGAGAGAGAATTGGAGCCGGTTTTTCGTAAACTTTGTTACAAGATTCGATATTGTCCCTCGGATTATGCTTGCTCGGAAGACAACGATAGAGCAAACCCTGTCTTACGTTCTTGGCAAATTGGATTCTACAAGAGCTCCGATCCATGAGAGCGACCAGGTGATAACAGAATTTTACACAAGGGTGATGCGAGACACATATACTGTTGCTTCCAAAGCTGTCTGTCAGTTGATTGGAAACGGAGAAGCGTTTTTAGAAACTCTTTCTAGTTTTTATGAGCTAAGTCCTTATAGACCAGTAGGCACTTTTGTCTTCTCTACACAGAAAAGATTGGTTGTAGTGAACAACTCAGACGCCATTCTTCAAATGTTGTTTTACACTTGTCAGTCCAACGACGAACAAGAATTGTCTGTGATTCCATTTCTAAGCATTAGAGATCACCATGGCTATGAGGAACTGGTACAATCCATTGGTATTAAGTTGCTTAATCATTTGGATCTGCATAATCCGCTTTTGGATGGAGAAAACTCAATAGGCTCCGCTCTCGACGACCTTGGAATGAGCACAAGAGCCAGACAGTGTATTCATGCTGCATTAGAGGCTGAGAAGCAACGAGTGGAAAATCAGAAGAAGATAGAAACCAAAAGAGATCAAATAGTAGAAAGACTAACTTGGATAGTGGAAGTATACAAGCCAAAGTGTCAAGCTCATAAAAATGGGTATTACGATTCCTTCAAAGATTCAAATGAAGAGAATGACTTCAAAGCAAACGTCAAGAGAGTGGAGTTAGCCGGTATTTTCGACGAGGTGCTTGGTTTAGTGAAGAAAGGTCAGCTTCCAGATGGATTCGAGGGGAGCAGAGGCTGGATCAATTTAGCAACTCAATACCGCAGATTAATTGAACCTCTTGATATTTCAAACTACCATGGGCAGTTAAAGAACGAAGACACAGGGCCGTACATGTTACATGGAAGACCAAGCCGCTACAAATACGCTCAGAGAGGGTACGAACATGATATATTAAAGCCAACTGGAATGATCGCAAAAGATGTGTTTTGGAGCAAGGTAAATGGTCTTAACTTAGGATTACAGCAAGACATTCAAGAGATCTTAAAGAATTCGGGATCCGAGTGCGGTTCATGCTTTTGGGCTGAGGTCGAAGAACTCAAGGGAAAGCCATATGAGGAAGTTCAGGTAAGATTCAAGACACTAGAAGGGTTGCTTGAAGGATGGATCAAAGACGGGGAAGTAGATGAGAAGGAAATATTTCTGGAGGGTTCAACATTTAGAAAGTGGTGGAATACACTTCCTGACAGTCACAAAATACATGCTCCGCTGTATCCACGTGAGCGTATGATGGATGAAACAAGAGCTACCTGA

Protein Analysis

629

Amino Acids

71.63

Weight (kDa)

5.76

Isoelectric Point (pI)

33.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_3 PF01764 41 - 195 1.3e-23 Lipase (class 3)
EDS1_EP PF18117 397 - 606 1.5e-42 Enhanced disease susceptibility 1 protein EP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 51
AccBSI CCGCTC 1 cut(s) 1052
AccI GTMKAC 1 cut(s) 1197
AccII CGCG 2 cut(s) 329, 506
AciI CCGC 7 cut(s) 329, 1019, 1050, 1399, 1492, 1644, 1844
AclWI GGATC 6 cut(s) 646, 1014, 1385, 1629, 1642, 1751
AcsI RAATTY 2 cut(s) 680, 1627
AcvI CACGTG 1 cut(s) 1856
AcyI GRCGYC 3 cut(s) 59, 432, 864
AfaI GTAC 3 cut(s) 972, 1469, 1517
AfiI CCNNNNNNNGG 2 cut(s) 51, 482
AflIII ACRYGT 1 cut(s) 1470
AjnI CCWGG 1 cut(s) 666
AjuI GAANNNNNNNTTGG 2 cut(s) 273, 305
AleI CACNNNNGTG 1 cut(s) 692
AloI GAACNNNNNNTCC 2 cut(s) 140, 172
Alw21I GWGCWC 4 cut(s) 87, 475, 649, 1076
Alw26I GTCTC 2 cut(s) 407, 696
AlwI GGATC 6 cut(s) 646, 1014, 1385, 1629, 1642, 1751
AlwNI CAGNNNCTG 1 cut(s) 1374
AoxI GGCC 1 cut(s) 1463
ApeKI GCWGC 2 cut(s) 440, 1100
ApoI RAATTY 2 cut(s) 680, 1627
ArsI GACNNNNNNTTYG 2 cut(s) 1266, 1298
AseI ATTAAT 1 cut(s) 1406
Asp700I GAANNNNTTC 2 cut(s) 1268, 1776
AspLEI GCGC 3 cut(s) 329, 380, 508
AspS9I GGNCC 2 cut(s) 293, 1463
AsuHPI GGTGA 6 cut(s) 34, 44, 497, 682, 706, 941
AvaII GGWCC 1 cut(s) 293
BamHI GGATCC 1 cut(s) 1634
BanII GRGCYC 2 cut(s) 475, 649
BbrPI CACGTG 1 cut(s) 1856
BbsI GAAGAC 4 cut(s) 596, 814, 1461, 1489
Bbv12I GWGCWC 4 cut(s) 87, 475, 649, 1076
BbvCI CCTCAGC 1 cut(s) 1662
BbvI GCAGC 2 cut(s) 427, 1087
BccI CCATC 5 cut(s) 49, 1022, 1346, 1734, 1861
BceAI ACGGC 1 cut(s) 1450
BcgI CGANNNNNNTGC 2 cut(s) 123, 157
BciT130I CCWGG 1 cut(s) 668
BciVI GTATCC 1 cut(s) 1860
BcoDI GTCTC 2 cut(s) 407, 696
BfaI CTAG 4 cut(s) 38, 392, 777, 1721
BfuI GTATCC 1 cut(s) 1860
BglII AGATCT 1 cut(s) 1617
BisI GCNGC 3 cut(s) 441, 1101, 1492
BlsI GCNGC 3 cut(s) 442, 1102, 1493
Bme1390I CCNGG 1 cut(s) 668
Bme18I GGWCC 1 cut(s) 293
BmgT120I GGNCC 2 cut(s) 293, 1463
BmiI GGNNCC 4 cut(s) 112, 527, 1048, 1636
BmrFI CCNGG 1 cut(s) 668
BmsI GCATC 3 cut(s) 143, 237, 687
BpiI GAAGAC 4 cut(s) 596, 814, 1461, 1489
BpmI CTGGAG 1 cut(s) 1802
Bpu10I CCTNAGC 2 cut(s) 447, 1662
BpuEI CTTGAG 2 cut(s) 254, 1661
BsaAI YACGTR 2 cut(s) 428, 1856
BsaHI GRCGYC 3 cut(s) 59, 432, 864
BsaJI CCNNGG 4 cut(s) 569, 952, 1063, 1435
BsaXI ACNNNNNCTCC 4 cut(s) 99, 129, 631, 661
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 482
Bse118I RCCGGY 2 cut(s) 528, 1301
Bse1I ACTGG 3 cut(s) 806, 972, 1546
BseBI CCWGG 1 cut(s) 668
BseDI CCNNGG 4 cut(s) 569, 952, 1063, 1435
BseGI GGATG 4 cut(s) 60, 1033, 1745, 1876
BseLI CCNNNNNNNGG 2 cut(s) 51, 482
BseMII CTCAG 5 cut(s) 438, 873, 1104, 1520, 1653
BseNI ACTGG 3 cut(s) 806, 972, 1546
BseXI GCAGC 2 cut(s) 427, 1087
Bsh1236I CGCG 2 cut(s) 329, 506
BshFI GGCC 1 cut(s) 1465
BsiHKAI GWGCWC 4 cut(s) 87, 475, 649, 1076
BsiSI CCGG 2 cut(s) 529, 1302
BslFI GGGAC 1 cut(s) 551
BslI CCNNNNNNNGG 2 cut(s) 51, 482
BsmAI GTCTC 2 cut(s) 407, 696
BsmFI GGGAC 1 cut(s) 551
BsnI GGCC 1 cut(s) 1465
Bsp1286I GDGCHC 4 cut(s) 87, 475, 649, 1076
Bsp19I CCATGG 2 cut(s) 952, 1435
BspACI CCGC 7 cut(s) 329, 1019, 1050, 1399, 1492, 1644, 1844
BspANI GGCC 1 cut(s) 1465
BspCNI CTCAG 5 cut(s) 439, 872, 1105, 1519, 1654
BspFNI CGCG 2 cut(s) 329, 506
BspLI GGNNCC 4 cut(s) 112, 527, 1048, 1636
BspPI GGATC 6 cut(s) 646, 1014, 1385, 1629, 1642, 1751
BsrBI CCGCTC 1 cut(s) 1052
BsrFI RCCGGY 2 cut(s) 528, 1301
BsrI ACTGG 3 cut(s) 806, 972, 1546
BssAI RCCGGY 2 cut(s) 528, 1301
BssECI CCNNGG 4 cut(s) 569, 952, 1063, 1435
BssNAI GTATAC 1 cut(s) 1198
BssNI GRCGYC 3 cut(s) 59, 432, 864
BssT1I CCWWGG 3 cut(s) 952, 1063, 1435
Bst1107I GTATAC 1 cut(s) 1198
Bst2UI CCWGG 1 cut(s) 668
Bst4CI ACNGT 7 cut(s) 32, 115, 253, 400, 715, 1089, 1826
Bst6I CTCTTC 1 cut(s) 1254
BstACI GRCGYC 3 cut(s) 59, 432, 864
BstBAI YACGTR 2 cut(s) 428, 1856
BstC8I GCNNGC 1 cut(s) 582
BstDEI CTNAG 8 cut(s) 447, 791, 859, 935, 1113, 1506, 1591, 1662
BstDSI CCRYGG 2 cut(s) 952, 1435
BstF5I GGATG 4 cut(s) 60, 1033, 1745, 1876
BstFNI CGCG 2 cut(s) 329, 506
BstHHI GCGC 3 cut(s) 329, 380, 508
BstMAI GTCTC 2 cut(s) 407, 696
BstMWI GCNNNNNNNGC 8 cut(s) 11, 131, 392, 440, 725, 1018, 1109, 1650
BstNI CCWGG 1 cut(s) 668
BstNSI RCATGY 2 cut(s) 1474, 1841
BstSCI CCNGG 1 cut(s) 666
BstUI CGCG 2 cut(s) 329, 506
BstV1I GCAGC 2 cut(s) 427, 1087
BstV2I GAAGAC 4 cut(s) 596, 814, 1461, 1489
BstX2I RGATCY 3 cut(s) 1006, 1617, 1634
BstYI RGATCY 3 cut(s) 1006, 1617, 1634
BstZ17I GTATAC 1 cut(s) 1198
BsuI GTATCC 1 cut(s) 1860
BsuRI GGCC 1 cut(s) 1465
BtgI CCRYGG 2 cut(s) 952, 1435
BtsCI GGATG 4 cut(s) 60, 1033, 1745, 1876
BtsIMutI CAGTG 1 cut(s) 1094
Cac8I GCNNGC 1 cut(s) 582
CaiI CAGNNNCTG 1 cut(s) 1374
CfoI GCGC 3 cut(s) 329, 380, 508
Cfr10I RCCGGY 2 cut(s) 528, 1301
Cfr13I GGNCC 2 cut(s) 293, 1463
CseI GACGC 3 cut(s) 48, 440, 872
CsiI ACCWGGT 1 cut(s) 666
Csp6I GTAC 3 cut(s) 971, 1468, 1516
CviQI GTAC 3 cut(s) 971, 1468, 1516
DdeI CTNAG 8 cut(s) 447, 791, 859, 935, 1113, 1506, 1591, 1662
DraI TTTAAA 1 cut(s) 499
Eam1104I CTCTTC 1 cut(s) 1254
EarI CTCTTC 1 cut(s) 1254
Ecl136II GAGCTC 2 cut(s) 473, 647
Eco130I CCWWGG 3 cut(s) 952, 1063, 1435
Eco24I GRGCYC 2 cut(s) 475, 649
Eco47I GGWCC 1 cut(s) 293
Eco53kI GAGCTC 2 cut(s) 473, 647
Eco72I CACGTG 1 cut(s) 1856
EcoICRI GAGCTC 2 cut(s) 473, 647
EcoRI GAATTC 1 cut(s) 1627
EcoRII CCWGG 1 cut(s) 666
EcoT14I CCWWGG 3 cut(s) 952, 1063, 1435
EcoT38I GRGCYC 2 cut(s) 475, 649
ErhI CCWWGG 3 cut(s) 952, 1063, 1435
FalI AAGNNNNNCTT 6 cut(s) 1165, 1197, 1329, 1361, 1716, 1748
FaqI GGGAC 1 cut(s) 551
FauNDI CATATG 1 cut(s) 1690
FblI GTMKAC 1 cut(s) 1197
Fnu4HI GCNGC 3 cut(s) 441, 1101, 1492
FokI GGATG 4 cut(s) 67, 1040, 1752, 1883
FriOI GRGCYC 2 cut(s) 475, 649
Fsp4HI GCNGC 3 cut(s) 441, 1101, 1492
FspBI CTAG 4 cut(s) 38, 392, 777, 1721
GlaI GCGC 3 cut(s) 328, 379, 507
GluI GCNGC 3 cut(s) 441, 1101, 1492
GsuI CTGGAG 1 cut(s) 1802
HaeIII GGCC 1 cut(s) 1465
HapII CCGG 2 cut(s) 529, 1302
HgaI GACGC 3 cut(s) 48, 440, 872
HhaI GCGC 3 cut(s) 329, 380, 508
Hin1I GRCGYC 3 cut(s) 59, 432, 864
Hin6I GCGC 3 cut(s) 327, 378, 506
HinP1I GCGC 3 cut(s) 327, 378, 506
HincII GTYRAC 3 cut(s) 28, 244, 256
HindII GTYRAC 3 cut(s) 28, 244, 256
HindIII AAGCTT 1 cut(s) 261
HinfI GANTC 8 cut(s) 24, 555, 635, 925, 1238, 1250, 1356, 1710
HpaI GTTAAC 1 cut(s) 256
HpaII CCGG 2 cut(s) 529, 1302
HphI GGTGA 6 cut(s) 34, 44, 497, 682, 706, 941
Hpy166II GTNNAC 7 cut(s) 28, 244, 256, 357, 541, 853, 1198
Hpy188III TCNNGA 9 cut(s) 1055, 1285, 1349, 1418, 1613, 1632, 1714, 1781, 1820
Hpy8I GTNNAC 7 cut(s) 28, 244, 256, 357, 541, 853, 1198
Hpy99I CGWCG 6 cut(s) 64, 148, 242, 908, 1061, 1316
HpyAV CCTTC 6 cut(s) 58, 136, 1252, 1718, 1730, 1762
HpyCH4III ACNGT 7 cut(s) 32, 115, 253, 400, 715, 1089, 1826
HpyCH4IV ACGT 5 cut(s) 240, 427, 618, 1281, 1855
HpyCH4V TGCA 4 cut(s) 322, 386, 1012, 1103
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 131, 392, 440, 725, 1018, 1109, 1650
HpyF3I CTNAG 8 cut(s) 447, 791, 859, 935, 1113, 1506, 1591, 1662
HpySE526I ACGT 5 cut(s) 240, 427, 618, 1281, 1855
Hsp92I GRCGYC 3 cut(s) 59, 432, 864
HspAI GCGC 3 cut(s) 327, 378, 506
KspAI GTTAAC 1 cut(s) 256
Lsp1109I GCAGC 2 cut(s) 427, 1087
LweI GCATC 3 cut(s) 143, 237, 687
MabI ACCWGGT 1 cut(s) 666
MaeI CTAG 4 cut(s) 38, 392, 777, 1721
MaeII ACGT 5 cut(s) 240, 427, 618, 1281, 1855
MaeIII GTNAC 8 cut(s) 40, 273, 428, 460, 485, 547, 1473, 1826
MbiI CCGCTC 1 cut(s) 1052
MflI RGATCY 3 cut(s) 1006, 1617, 1634
MhlI GDGCHC 4 cut(s) 87, 475, 649, 1076
MluCI AATT 9 cut(s) 209, 387, 520, 629, 680, 914, 1381, 1407, 1627
MlyI GAGTC 1 cut(s) 33
MmeI TCCRAC 2 cut(s) 126, 924
MroXI GAANNNNTTC 2 cut(s) 1268, 1776
MseI TTAA 9 cut(s) 255, 498, 987, 996, 1406, 1445, 1532, 1587, 1622
MslI CAYNNNNRTG 3 cut(s) 692, 957, 1224
MspA1I CMGCKG 1 cut(s) 1846
MspI CCGG 2 cut(s) 529, 1302
MspR9I CCNGG 1 cut(s) 668
MvaI CCWGG 1 cut(s) 668
MvnI CGCG 2 cut(s) 329, 506
MwoI GCNNNNNNNGC 8 cut(s) 11, 131, 392, 440, 725, 1018, 1109, 1650
NcoI CCATGG 2 cut(s) 952, 1435
NdeI CATATG 1 cut(s) 1690
NlaIV GGNNCC 4 cut(s) 112, 527, 1048, 1636
NmuCI GTSAC 6 cut(s) 40, 273, 428, 460, 485, 1826
NspI RCATGY 2 cut(s) 1474, 1841
OliI CACNNNNGTG 1 cut(s) 692
PciI ACATGT 1 cut(s) 1470
PcsI WCGNNNNNNNCGW 1 cut(s) 237
PdmI GAANNNNTTC 2 cut(s) 1268, 1776
PfeI GAWTC 7 cut(s) 555, 635, 925, 1238, 1250, 1356, 1710
PflMI CCANNNNNTGG 1 cut(s) 51
PkrI GCNGC 3 cut(s) 442, 1102, 1493
PleI GAGTC 1 cut(s) 32
PmaCI CACGTG 1 cut(s) 1856
PmlI CACGTG 1 cut(s) 1856
PpsI GAGTC 1 cut(s) 32
Ppu21I YACGTR 2 cut(s) 428, 1856
PscI ACATGT 1 cut(s) 1470
PshBI ATTAAT 1 cut(s) 1406
Psp124BI GAGCTC 2 cut(s) 475, 649
Psp6I CCWGG 1 cut(s) 666
PspCI CACGTG 1 cut(s) 1856
PspGI CCWGG 1 cut(s) 666
PspN4I GGNNCC 4 cut(s) 112, 527, 1048, 1636
PspPI GGNCC 2 cut(s) 293, 1463
PstNI CAGNNNCTG 1 cut(s) 1374
PsuI RGATCY 3 cut(s) 1006, 1617, 1634
RsaI GTAC 3 cut(s) 972, 1469, 1517
RsaNI GTAC 3 cut(s) 971, 1468, 1516
RseI CAYNNNNRTG 3 cut(s) 692, 957, 1224
SacI GAGCTC 2 cut(s) 475, 649
SaqAI TTAA 9 cut(s) 255, 498, 987, 996, 1406, 1445, 1532, 1587, 1622
SatI GCNGC 3 cut(s) 441, 1101, 1492
Sau96I GGNCC 2 cut(s) 293, 1463
SchI GAGTC 1 cut(s) 33
ScrFI CCNGG 1 cut(s) 668
SduI GDGCHC 4 cut(s) 87, 475, 649, 1076
SexAI ACCWGGT 1 cut(s) 666
SfaNI GCATC 3 cut(s) 143, 237, 687
SinI GGWCC 1 cut(s) 293
SmiMI CAYNNNNRTG 3 cut(s) 692, 957, 1224
SmlI CTYRAG 2 cut(s) 269, 1676
SmoI CTYRAG 2 cut(s) 269, 1676
Sse9I AATT 9 cut(s) 209, 387, 520, 629, 680, 914, 1381, 1407, 1627
SsiI CCGC 7 cut(s) 329, 1019, 1050, 1399, 1492, 1644, 1844
SspI AATATT 1 cut(s) 1776
SspMI CTAG 4 cut(s) 38, 392, 777, 1721
SstI GAGCTC 2 cut(s) 475, 649
StyD4I CCNGG 1 cut(s) 666
StyI CCWWGG 3 cut(s) 952, 1063, 1435
TaaI ACNGT 7 cut(s) 32, 115, 253, 400, 715, 1089, 1826
TaiI ACGT 5 cut(s) 243, 430, 621, 1284, 1858
TaqI TCGA 6 cut(s) 62, 558, 1056, 1311, 1359, 1668
TasI AATT 9 cut(s) 209, 387, 520, 629, 680, 914, 1381, 1407, 1627
TauI GCSGC 1 cut(s) 1494
TfiI GAWTC 7 cut(s) 555, 635, 925, 1238, 1250, 1356, 1710
Tru1I TTAA 9 cut(s) 255, 498, 987, 996, 1406, 1445, 1532, 1587, 1622
Tru9I TTAA 9 cut(s) 255, 498, 987, 996, 1406, 1445, 1532, 1587, 1622
TscAI CASTG 1 cut(s) 1094
TseFI GTSAC 6 cut(s) 40, 273, 428, 460, 485, 1826
TseI GCWGC 2 cut(s) 440, 1100
Tsp45I GTSAC 6 cut(s) 40, 273, 428, 460, 485, 1826
TspDTI ATGAA 7 cut(s) 212, 299, 412, 1085, 1272, 1638, 1887
TspGWI ACGGA 3 cut(s) 95, 179, 765
TspRI CASTG 1 cut(s) 1094
Van91I CCANNNNNTGG 1 cut(s) 51
VpaK11BI GGWCC 1 cut(s) 293
VspI ATTAAT 1 cut(s) 1406
XapI RAATTY 2 cut(s) 680, 1627
XceI RCATGY 2 cut(s) 1474, 1841
XcmI CCANNNNNNNNNTGG 1 cut(s) 52
XmiI GTMKAC 1 cut(s) 1197
XmnI GAANNNNTTC 2 cut(s) 1268, 1776
XspI CTAG 4 cut(s) 38, 392, 777, 1721
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.