AT3G48090

lipase class 3 family protein disease resistance protein-related

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
17755329 .. 17758147
2819 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G48090.1

Sequence Viewer

Length: 1872 bp
ATGGCGTTTGAAGCTCTTACCGGAATCAATGGTGATCTAATCACCAGATCATGGTCAGCCTCGAAGCAAGCTTACCTAACCGAGCGCTATCACAAGGAAGAAGCAGGAGCAGTCGTAATCTTCGCTTTCCAACCATCTTTCTCAGAGAAAGATTTCTTCGATCCGGACAATAAATCTTCCTTTGGAGAAATCAAGTTGAACCGTGTTCAGTTTCCTTGTATGAGGAAAATCGGTAAAGGTGATGTAGCTACTGTTAACGAAGCTTTCCTCAAGAATCTTGAAGCTATCATTGATCCAAGAACCTCATTTCAAGCTTCTGTGGAAATGGCTGTGAGGAGTAGAAAACAGATAGTGTTCACAGGACATTCCTCAGGAGGTGCAACTGCAATCTTAGCAACAGTTTGGTATTTGGAGAAATACTTCATACGCAATCCAAATGTTTACCTTGAGCCTCGTTGTGTGACATTTGGAGCTCCTTTGGTTGGTGACTCTATCTTCAGTCACGCACTTGGGAGAGAAAAATGGAGCCGGTTCTTTGTGAACTTTGTCTCAAGATTCGATATTGTCCCTCGGATTATGCTTGCTCGAAAGGCGTCTGTAGAGGAAACTTTGCCTCATGTTCTTGCCCAATTGGATCCCAGAAAGTCTTCCGTCCAAGAGAGTGAACAGAGAATAACAGAGTTTTACACAAGGGTGATGCGAGACACATCAACTGTTGCAAACCAAGCTGTTTGTGAATTGACTGGAAGCGCAGAGGCGTTTTTAGAGACCCTTTCTAGTTTCCTTGAGCTAAGTCCTTATAGACCCGCCGGTACTTTTGTTTTCTCTACAGAGAAGAGATTGGTTGCAGTGAACAACTCGGACGCCATTCTTCAAATGCTGTTTTACACTTCTCAAGCCAGCGATGAACAAGAATGGTCTCTAATTCCATTTCGAAGTATCAGAGATCATCATAGCTATGAGGAACTGGTACAGTCGATGGGAAAGAAGTTGTTTAATCATTTGGATGGAGAAAACTCAATAGAGTCTACGCTCAATGACCTTGGAGTGAGCACAAGAGGCAGACAGTACGTTCAAGCTGCATTAGAGGAAGAGAAGAAACGAGTAGAGAATCAGAAGAAGATTATTCAGGTGATCGAGCAAGAGAGGTTTTTAAAGAAACTAGCATGGATAGAAGATGAATACAAGCCAAAGTGTCAAGCCCATAAAAATGGGTATTATGATTCCTTCAAAGTTTCAAATGAAGAGAATGACTTCAAAGCAAACGTCAAGAGAGCTGAGTTAGCCGGTGTTTTTGACGAGGTGCTTGGTTTAATGAAGAAATGTCAACTTCCAGATGAGTTCGAAGGGGACATAGATTGGATCAAGTTAGCAACTCGATACCGCAGATTAGTTGAGCCTCTTGATATTGCAAACTACCATCGACATTTAAAGAACGAAGACACAGGGCCGTACATGAAAAGAGGAAGACCAACCCGCTACATATATGCTCAGAGAGGCTACGAACATTATATACTGAAGCCAAACGGAATGATTGCAGAAGATGTATTTTGGAACAAGGTAAATGGTCTTAACTTAGGGTTACAGCTAGAAGAAATTCAAGAGACTCTAAAGAATTCGGGATCCGAGTGCGGATCATGCTTTTGGGCTGAGGTTGAAGAACTCAAAGGAAAGCCATACGAGGAAGTTGAGGTAAGAGTTAAGACATTAGAAGGGATGCTTGGAGAATGGATCACAGACGGGGAGGTAGATGATAAGGAAATATTTCTGGAGGGTTCAACGTTTAGAAAGTGGTGGATTACGCTTCCCAAAAATCACAAATCGCATTCTCCTCTGCGAGACTATATGATGGATGAAATAACAGATACCTGA

Protein Analysis

623

Amino Acids

71.69

Weight (kDa)

5.73

Isoelectric Point (pI)

38.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_3 PF01764 82 - 195 2.9e-20 Lipase (class 3)
EDS1_EP PF18117 393 - 612 2.2e-41 Enhanced disease susceptibility 1 protein EP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 51
AccI GTMKAC 1 cut(s) 1028
AccIII TCCGGA 1 cut(s) 163
AciI CCGC 4 cut(s) 807, 1384, 1477, 1632
AclI AACGTT 1 cut(s) 1781
AclWI GGATC 9 cut(s) 155, 287, 629, 642, 1370, 1617, 1630, 1642, 1739
AcsI RAATTY 2 cut(s) 1596, 1615
AcuI CTGAAG 2 cut(s) 481, 1538
AcyI GRCGYC 2 cut(s) 593, 864
AfaI GTAC 4 cut(s) 814, 972, 1070, 1454
AfeI AGCGCT 1 cut(s) 86
AfiI CCNNNNNNNGG 2 cut(s) 51, 482
AjuI GAANNNNNNNTTGG 2 cut(s) 1704, 1736
AleI CACNNNNGTG 1 cut(s) 692
Alw21I GWGCWC 2 cut(s) 475, 1055
Alw26I GTCTC 6 cut(s) 553, 696, 761, 924, 1598, 1833
AlwI GGATC 9 cut(s) 155, 287, 629, 642, 1370, 1617, 1630, 1642, 1739
Aor13HI TCCGGA 1 cut(s) 163
Aor51HI AGCGCT 1 cut(s) 86
AoxI GGCC 1 cut(s) 1448
ApeKI GCWGC 1 cut(s) 1079
ApoI RAATTY 2 cut(s) 1596, 1615
ArsI GACNNNNNNTTYG 2 cut(s) 1251, 1283
Asp700I GAANNNNTTC 6 cut(s) 152, 419, 646, 1253, 1596, 1764
AspLEI GCGC 2 cut(s) 87, 752
AspS9I GGNCC 1 cut(s) 1448
AsuHPI GGTGA 6 cut(s) 34, 44, 251, 497, 706, 1144
AsuII TTCGAA 2 cut(s) 934, 1344
AxyI CCTNAGG 1 cut(s) 370
BaeI ACNNNNGTAYC 2 cut(s) 804, 837
BamHI GGATCC 2 cut(s) 634, 1622
BanII GRGCYC 1 cut(s) 475
BarI GAAGNNNNNNTAC 2 cut(s) 56, 88
BbsI GAAGAC 3 cut(s) 639, 1446, 1474
Bbv12I GWGCWC 2 cut(s) 475, 1055
BbvCI CCTCAGC 1 cut(s) 1650
BbvI GCAGC 1 cut(s) 1066
BccI CCATC 5 cut(s) 142, 973, 1001, 1428, 1843
BceAI ACGGC 1 cut(s) 1435
BcoDI GTCTC 6 cut(s) 553, 696, 761, 924, 1598, 1833
BfaI CTAG 3 cut(s) 777, 1163, 1589
BfmI CTRYAG 2 cut(s) 597, 828
BfoI RGCGCY 1 cut(s) 88
BisI GCNGC 1 cut(s) 1080
BlsI GCNGC 1 cut(s) 1081
BmgT120I GGNCC 1 cut(s) 1448
BmiI GGNNCC 3 cut(s) 527, 636, 1624
BmsI GCATC 2 cut(s) 687, 1707
BpiI GAAGAC 3 cut(s) 639, 1446, 1474
BpmI CTGGAG 1 cut(s) 1790
Bpu10I CCTNAGC 1 cut(s) 1650
Bpu14I TTCGAA 2 cut(s) 934, 1344
BpuEI CTTGAG 5 cut(s) 254, 467, 535, 806, 879
BsaHI GRCGYC 2 cut(s) 593, 864
BsaI GGTCTC 2 cut(s) 761, 924
BsaJI CCNNGG 2 cut(s) 569, 1042
BsaWI WCCGGW 2 cut(s) 20, 163
BsaXI ACNNNNNCTCC 2 cut(s) 99, 129
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 482
Bse118I RCCGGY 3 cut(s) 528, 809, 1286
Bse1I ACTGG 2 cut(s) 748, 972
Bse21I CCTNAGG 1 cut(s) 370
BseAI TCCGGA 1 cut(s) 163
BseDI CCNNGG 2 cut(s) 569, 1042
BseGI GGATG 3 cut(s) 1012, 1722, 1858
BseLI CCNNNNNNNGG 2 cut(s) 51, 482
BseMII CTCAG 5 cut(s) 156, 384, 1269, 1505, 1641
BseNI ACTGG 2 cut(s) 748, 972
BseRI GAGGAG 2 cut(s) 349, 1821
BseXI GCAGC 1 cut(s) 1066
BshFI GGCC 1 cut(s) 1450
BsiHKAI GWGCWC 2 cut(s) 475, 1055
BsiSI CCGG 5 cut(s) 21, 164, 529, 810, 1287
BslFI GGGAC 2 cut(s) 551, 1364
BslI CCNNNNNNNGG 2 cut(s) 51, 482
BsmAI GTCTC 6 cut(s) 553, 696, 761, 924, 1598, 1833
BsmFI GGGAC 2 cut(s) 551, 1364
BsmI GAATGC 1 cut(s) 1825
BsnI GGCC 1 cut(s) 1450
Bso31I GGTCTC 2 cut(s) 761, 924
Bsp119I TTCGAA 2 cut(s) 934, 1344
Bsp1286I GDGCHC 2 cut(s) 475, 1055
Bsp13I TCCGGA 1 cut(s) 163
BspACI CCGC 4 cut(s) 807, 1384, 1477, 1632
BspANI GGCC 1 cut(s) 1450
BspCNI CTCAG 5 cut(s) 155, 383, 1270, 1504, 1642
BspEI TCCGGA 1 cut(s) 163
BspLI GGNNCC 3 cut(s) 527, 636, 1624
BspPI GGATC 9 cut(s) 155, 287, 629, 642, 1370, 1617, 1630, 1642, 1739
BspT104I TTCGAA 2 cut(s) 934, 1344
BspTNI GGTCTC 2 cut(s) 761, 924
BsrFI RCCGGY 3 cut(s) 528, 809, 1286
BsrI ACTGG 2 cut(s) 748, 972
BssAI RCCGGY 3 cut(s) 528, 809, 1286
BssECI CCNNGG 2 cut(s) 569, 1042
BssNI GRCGYC 2 cut(s) 593, 864
BssT1I CCWWGG 1 cut(s) 1042
Bst4CI ACNGT 6 cut(s) 203, 253, 400, 715, 975, 1068
Bst6I CTCTTC 3 cut(s) 830, 1086, 1239
BstACI GRCGYC 2 cut(s) 593, 864
BstBI TTCGAA 2 cut(s) 934, 1344
BstC8I GCNNGC 3 cut(s) 69, 582, 901
BstDEI CTNAG 8 cut(s) 142, 370, 391, 791, 1278, 1491, 1576, 1650
BstF5I GGATG 3 cut(s) 1012, 1722, 1858
BstH2I RGCGCY 1 cut(s) 88
BstHHI GCGC 2 cut(s) 87, 752
BstMAI GTCTC 6 cut(s) 553, 696, 761, 924, 1598, 1833
BstMWI GCNNNNNNNGC 7 cut(s) 11, 392, 590, 725, 1059, 1283, 1638
BstSFI CTRYAG 2 cut(s) 597, 828
BstV1I GCAGC 1 cut(s) 1066
BstV2I GAAGAC 3 cut(s) 639, 1446, 1474
BstX2I RGATCY 2 cut(s) 634, 1622
BstXI CCANNNNNNTGG 1 cut(s) 1211
BstYI RGATCY 2 cut(s) 634, 1622
Bsu36I CCTNAGG 1 cut(s) 370
BsuRI GGCC 1 cut(s) 1450
BtgZI GCGATG 1 cut(s) 918
BtsCI GGATG 3 cut(s) 1012, 1722, 1858
BtsI GCAGTG 1 cut(s) 855
BtsIMutI CAGTG 1 cut(s) 855
Cac8I GCNNGC 3 cut(s) 69, 582, 901
CfoI GCGC 2 cut(s) 87, 752
Cfr10I RCCGGY 3 cut(s) 528, 809, 1286
Cfr13I GGNCC 1 cut(s) 1448
CseI GACGC 2 cut(s) 582, 872
Csp6I GTAC 4 cut(s) 813, 971, 1069, 1453
CviAII CATG 5 cut(s) 51, 617, 1167, 1456, 1638
CviQI GTAC 4 cut(s) 813, 971, 1069, 1453
DdeI CTNAG 8 cut(s) 142, 370, 391, 791, 1278, 1491, 1576, 1650
DraI TTTAAA 2 cut(s) 1155, 1431
Eam1104I CTCTTC 3 cut(s) 830, 1086, 1239
EarI CTCTTC 3 cut(s) 830, 1086, 1239
Ecl136II GAGCTC 1 cut(s) 473
Eco130I CCWWGG 1 cut(s) 1042
Eco24I GRGCYC 1 cut(s) 475
Eco31I GGTCTC 2 cut(s) 761, 924
Eco47III AGCGCT 1 cut(s) 86
Eco53kI GAGCTC 1 cut(s) 473
Eco57I CTGAAG 2 cut(s) 481, 1538
Eco81I CCTNAGG 1 cut(s) 370
EcoICRI GAGCTC 1 cut(s) 473
EcoRI GAATTC 1 cut(s) 1615
EcoT14I CCWWGG 1 cut(s) 1042
EcoT38I GRGCYC 1 cut(s) 475
ErhI CCWWGG 1 cut(s) 1042
FaeI CATG 5 cut(s) 54, 620, 1170, 1459, 1641
FalI AAGNNNNNCTT 2 cut(s) 1704, 1736
FaqI GGGAC 2 cut(s) 551, 1364
FatI CATG 5 cut(s) 50, 616, 1166, 1455, 1637
FauI CCCGC 2 cut(s) 814, 1484
FblI GTMKAC 1 cut(s) 1028
Fnu4HI GCNGC 1 cut(s) 1080
FokI GGATG 3 cut(s) 1019, 1729, 1865
FriOI GRGCYC 1 cut(s) 475
Fsp4HI GCNGC 1 cut(s) 1080
FspBI CTAG 3 cut(s) 777, 1163, 1589
GlaI GCGC 2 cut(s) 86, 751
GluI GCNGC 1 cut(s) 1080
GsuI CTGGAG 1 cut(s) 1790
HaeII RGCGCY 1 cut(s) 88
HaeIII GGCC 1 cut(s) 1450
HapII CCGG 5 cut(s) 21, 164, 529, 810, 1287
HgaI GACGC 2 cut(s) 582, 872
HhaI GCGC 2 cut(s) 87, 752
Hin1I GRCGYC 2 cut(s) 593, 864
Hin1II CATG 5 cut(s) 54, 620, 1170, 1459, 1641
Hin6I GCGC 2 cut(s) 85, 750
HinP1I GCGC 2 cut(s) 85, 750
HincII GTYRAC 2 cut(s) 256, 1328
HindII GTYRAC 2 cut(s) 256, 1328
HindIII AAGCTT 3 cut(s) 69, 261, 312
HinfI GANTC 8 cut(s) 24, 274, 488, 555, 1025, 1111, 1223, 1606
HpaI GTTAAC 1 cut(s) 256
HpaII CCGG 5 cut(s) 21, 164, 529, 810, 1287
HphI GGTGA 6 cut(s) 34, 44, 251, 497, 706, 1144
Hpy166II GTNNAC 8 cut(s) 256, 357, 442, 541, 665, 853, 1029, 1328
Hpy188I TCNGA 7 cut(s) 145, 573, 862, 944, 1116, 1494, 1627
Hpy8I GTNNAC 8 cut(s) 256, 357, 442, 541, 665, 853, 1029, 1328
HpyAV CCTTC 3 cut(s) 1237, 1340, 1706
HpyCH4III ACNGT 6 cut(s) 203, 253, 400, 715, 975, 1068
HpyCH4IV ACGT 3 cut(s) 1071, 1266, 1781
HpyCH4V TGCA 7 cut(s) 380, 386, 719, 848, 1082, 1412, 1538
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 392, 590, 725, 1059, 1283, 1638
HpyF3I CTNAG 8 cut(s) 142, 370, 391, 791, 1278, 1491, 1576, 1650
HpySE526I ACGT 3 cut(s) 1071, 1266, 1781
Hsp92I GRCGYC 2 cut(s) 593, 864
Hsp92II CATG 5 cut(s) 54, 620, 1170, 1459, 1641
HspAI GCGC 2 cut(s) 85, 750
Kpn2I TCCGGA 1 cut(s) 163
KspAI GTTAAC 1 cut(s) 256
LmnI GCTCC 4 cut(s) 107, 470, 478, 525
Lsp1109I GCAGC 1 cut(s) 1066
LweI GCATC 2 cut(s) 687, 1707
MaeI CTAG 3 cut(s) 777, 1163, 1589
MaeII ACGT 3 cut(s) 1071, 1266, 1781
MaeIII GTNAC 4 cut(s) 460, 485, 500, 1581
MfeI CAATTG 1 cut(s) 629
MflI RGATCY 2 cut(s) 634, 1622
MhlI GDGCHC 2 cut(s) 475, 1055
MluCI AATT 5 cut(s) 629, 737, 924, 1596, 1615
MlyI GAGTC 3 cut(s) 482, 1034, 1600
MmeI TCCRAC 1 cut(s) 154
MroI TCCGGA 1 cut(s) 163
MroXI GAANNNNTTC 6 cut(s) 152, 419, 646, 1253, 1596, 1764
MseI TTAA 7 cut(s) 255, 996, 1154, 1313, 1430, 1572, 1701
MslI CAYNNNNRTG 4 cut(s) 692, 957, 1005, 1209
MspI CCGG 5 cut(s) 21, 164, 529, 810, 1287
MunI CAATTG 1 cut(s) 629
Mva1269I GAATGC 1 cut(s) 1825
MwoI GCNNNNNNNGC 7 cut(s) 11, 392, 590, 725, 1059, 1283, 1638
NlaIII CATG 5 cut(s) 54, 620, 1170, 1459, 1641
NlaIV GGNNCC 3 cut(s) 527, 636, 1624
NmuCI GTSAC 3 cut(s) 460, 485, 500
NspV TTCGAA 2 cut(s) 934, 1344
OliI CACNNNNGTG 1 cut(s) 692
PctI GAATGC 1 cut(s) 1825
PdmI GAANNNNTTC 6 cut(s) 152, 419, 646, 1253, 1596, 1764
PfeI GAWTC 5 cut(s) 24, 274, 555, 1111, 1223
PflMI CCANNNNNTGG 1 cut(s) 51
PkrI GCNGC 1 cut(s) 1081
PleI GAGTC 3 cut(s) 482, 1033, 1600
PpsI GAGTC 3 cut(s) 482, 1033, 1600
Psp124BI GAGCTC 1 cut(s) 475
Psp1406I AACGTT 1 cut(s) 1781
PspN4I GGNNCC 3 cut(s) 527, 636, 1624
PspPI GGNCC 1 cut(s) 1448
PsrI GAACNNNNNNTAC 2 cut(s) 1497, 1529
PsuI RGATCY 2 cut(s) 634, 1622
RsaI GTAC 4 cut(s) 814, 972, 1070, 1454
RsaNI GTAC 4 cut(s) 813, 971, 1069, 1453
RseI CAYNNNNRTG 4 cut(s) 692, 957, 1005, 1209
SacI GAGCTC 1 cut(s) 475
SaqAI TTAA 7 cut(s) 255, 996, 1154, 1313, 1430, 1572, 1701
SatI GCNGC 1 cut(s) 1080
Sau96I GGNCC 1 cut(s) 1448
SchI GAGTC 3 cut(s) 482, 1034, 1600
SduI GDGCHC 2 cut(s) 475, 1055
SfaNI GCATC 2 cut(s) 687, 1707
SfcI CTRYAG 2 cut(s) 597, 828
SfuI TTCGAA 2 cut(s) 934, 1344
SmiMI CAYNNNNRTG 4 cut(s) 692, 957, 1005, 1209
SmlI CTYRAG 5 cut(s) 269, 446, 550, 785, 894
SmoI CTYRAG 5 cut(s) 269, 446, 550, 785, 894
Sse9I AATT 5 cut(s) 629, 737, 924, 1596, 1615
SsiI CCGC 4 cut(s) 807, 1384, 1477, 1632
SspI AATATT 1 cut(s) 1764
SspMI CTAG 3 cut(s) 777, 1163, 1589
SstI GAGCTC 1 cut(s) 475
StyI CCWWGG 1 cut(s) 1042
TaaI ACNGT 6 cut(s) 203, 253, 400, 715, 975, 1068
TaiI ACGT 3 cut(s) 1074, 1269, 1784
TasI AATT 5 cut(s) 629, 737, 924, 1596, 1615
TfiI GAWTC 5 cut(s) 24, 274, 555, 1111, 1223
Tru1I TTAA 7 cut(s) 255, 996, 1154, 1313, 1430, 1572, 1701
Tru9I TTAA 7 cut(s) 255, 996, 1154, 1313, 1430, 1572, 1701
TscAI CASTG 1 cut(s) 855
TseFI GTSAC 3 cut(s) 460, 485, 500
TseI GCWGC 1 cut(s) 1079
Tsp45I GTSAC 3 cut(s) 460, 485, 500
TspDTI ATGAA 7 cut(s) 412, 921, 1194, 1257, 1331, 1472, 1869
TspGWI ACGGA 2 cut(s) 640, 1542
TspRI CASTG 1 cut(s) 855
Van91I CCANNNNNTGG 1 cut(s) 51
XapI RAATTY 2 cut(s) 1596, 1615
XmiI GTMKAC 1 cut(s) 1028
XmnI GAANNNNTTC 6 cut(s) 152, 419, 646, 1253, 1596, 1764
XspI CTAG 3 cut(s) 777, 1163, 1589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.