pycom06g16180

Lipase (class 3)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Forward (+)
20557270 .. 20560021
2752 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g16180.2

Sequence Viewer

Length: 1851 bp
ATGGGAAGTGAAAGGCTGGGAGAGAAGTTGAATATAAGCGAGGAGCTTATCAAGAAAAGCTGCTCTCTTGCCTTCAAGGCACACAAATCCCCAGATGATCTGTTTCATGTGGAGGAATATGCTTCTGGATCATCAGATGTTGTTTTCAGCTTCCCAGGATCGTGGTCTGTGGAGAGTTGGGCTTCTGGAGAAAGTGCTTTTGGGGAAAAAAAGATCCAACTTTCACTCTTTCCTTCCATGAAAAGCATAGGTCATTATGATGAAGCTGCAGGACCTGGTGGGCACCAAGATTTTGCAATTGCAAGTTTCAACCAAGCCTTTTTGCAGAAGTTTGAACATGTATTGCAGAATTCCCAGCTTAAAAATAAGGTACAAGAGGTTGTCAATGAAAGGAAGAGAATAGTATTTACCGGCCACTCTACAGGCGGTGCAACTGCCGTGCTTGCCACAATCTGGTGCTTTGAAAATTACCCGAAACAAAGCCATGAAACATTTTTCTGTGTGACTTTCGGGTCTCCCCTTATTGGCAACCATATTATTTCCCATGCTCTTAGGAGAGAAAATTGGTCTCAATTCTTCATACATTTTGTCATGAGATATGACATTATCCCTCGGATTCTGCTTGCTCCGCTCTTTTCCATTCAACATGAATTCGAGAGGATCCTTCCCTTCTTCGACCCAAATTCCCCCGCCTATGCGAGTGAGTCGATTGGATCATCCCAGGAAGCCTTCCTTTTATTTAGAAATGTGATGAGAAATGCAGCATCTCTTACAACTCATGCTGCTTCCAAACTACAGGGGAGTACCAACCCATTACTCGAAACTGTAAAAAAGTTCGTTAAGCTAAGCCCGTACAAACCTTTCGGAACTTACATTTTTTGCACCGGCAACGGGAAACTGGTTGTCATGAAAAACCCTGAAGCTGTGTTGCAACTCTTGTTCTACTCGTGTCAATTGAGCAGCGAAAGTGAAGGGGCAAGGATCGTGCTTAAATGCTTAAACGAGCATTTGGCCTACGAAAATGAGCTTGAAGGCAGCTTGGACATGCAGTGTGTGACTTATGATGATAACCTAGAAACGCTCCCCTTAGCCTCAGATGGTTTCTTTGATGACCTTGGCATGAGCGAAAAGGCTAGATTATGCCTTCGCGCAGCAGGAGAATTCGAGAAGCAAAAACGAAGAAACCAGGAGAAAGTTGGTTCAAAACTGGATATGATCACGAAACATTTGAAAATAATTGAAGACTACCGGGCCTTATGCGAGCACACTGTCGGATATTACAAAGCCTTCAAAATTCATAAAAACAAGACAGATTTCGATGCTAATTTGAGCAGGATTGAGCTAACAGGTATAATGGATGAGGTCATTGAAATGTTCACAAGATACGACCTCCCCGATGAACTGGAGGCTACAAAAGAGTGGATAAATCTTGGAACTAGGTATCGCCGCCTTGTCGAGCCTCTTGATGTGGCTAACTACTACAGGCACTCGAAGGACGAGGACACCGAATCCTATATGAAGAAAGGCAGGCCAACGCGCTTCAAATGGATGCAGAGATGGCTCGAGTACGAACAGAAACTGCAAACTGGTTCATGTGGGGAGTCTTGCTTCTGGGCAGAAGTGGAGGAGTTGCACAAGCTTTCCGGCAACTTTGTGGCGGTATACGAGGAAAGGGAGAGAGTTTTGAGAGTTCAGGAGCAAGTAGGGAAATGGATTAAGGACGGGGTGATCGGTAAGGATGTGTTGCTCAAGTCGTCCACCTTCGAGGAATGGTGGAGCAAACTTCCCGCTGACCTACAAACAGAAACGATTTCGCTACTTGTGAATGGTTTAGGAAATGTGCAAGCGTAA

Protein Analysis

617

Amino Acids

70.34

Weight (kDa)

5.97

Isoelectric Point (pI)

43.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 511
AccB1I GGYRCC 1 cut(s) 282
AccB7I CCANNNNNTGG 1 cut(s) 453
AccBSI CCGCTC 1 cut(s) 631
AccI GTMKAC 1 cut(s) 1662
AccII CGCG 2 cut(s) 1149, 1537
AciI CCGC 6 cut(s) 426, 629, 690, 1447, 1658, 1788
AclWI GGATC 7 cut(s) 136, 166, 208, 655, 668, 721, 989
AcoI YGGCCR 1 cut(s) 412
AcsI RAATTY 5 cut(s) 349, 650, 682, 1160, 1293
AcuI CTGAAG 1 cut(s) 939
AfaI GTAC 4 cut(s) 372, 805, 854, 1568
AfiI CCNNNNNNNGG 3 cut(s) 453, 524, 891
AflIII ACRYGT 1 cut(s) 337
AjnI CCWGG 4 cut(s) 154, 274, 720, 1185
AjuI GAANNNNNNNTTGG 2 cut(s) 183, 215
Alw21I GWGCWC 1 cut(s) 1266
Alw26I GTCTC 2 cut(s) 519, 573
AlwI GGATC 7 cut(s) 136, 166, 208, 655, 668, 721, 989
AlwNI CAGNNNCTG 2 cut(s) 275, 1579
Ama87I CYCGRG 1 cut(s) 1562
AoxI GGCC 4 cut(s) 412, 1011, 1251, 1529
ApeKI GCWGC 7 cut(s) 60, 266, 761, 782, 960, 1035, 1151
ApoI RAATTY 5 cut(s) 349, 650, 682, 1160, 1293
AspLEI GCGC 2 cut(s) 1151, 1539
AspS9I GGNCC 2 cut(s) 272, 1251
AsuC2I CCSGG 1 cut(s) 1250
AsuHPI GGTGA 1 cut(s) 1738
AvaI CYCGRG 1 cut(s) 1562
AvaII GGWCC 1 cut(s) 272
BaeGI GKGCMC 1 cut(s) 285
BamHI GGATCC 1 cut(s) 660
BanI GGYRCC 1 cut(s) 282
BauI CACGAG 1 cut(s) 946
BbsI GAAGAC 1 cut(s) 1248
Bbv12I GWGCWC 1 cut(s) 1266
BbvI GCAGC 7 cut(s) 47, 253, 769, 773, 972, 1047, 1163
BccI CCATC 2 cut(s) 1091, 1551
BceAI ACGGC 1 cut(s) 422
BciT130I CCWGG 4 cut(s) 156, 276, 722, 1187
BclI TGATCA 1 cut(s) 1215
BcnI CCSGG 1 cut(s) 1250
BcoDI GTCTC 2 cut(s) 519, 573
BfaI CTAG 3 cut(s) 1073, 1134, 1437
BfmI CTRYAG 4 cut(s) 267, 420, 794, 1480
BglI GCCNNNNNGGC 1 cut(s) 77
BisI GCNGC 8 cut(s) 61, 267, 762, 783, 961, 1036, 1152, 1447
BlpI GCTNAGC 1 cut(s) 845
BlsI GCNGC 8 cut(s) 62, 268, 763, 784, 962, 1037, 1153, 1448
Bme1390I CCNGG 5 cut(s) 156, 276, 722, 1187, 1250
Bme18I GGWCC 1 cut(s) 272
BmeT110I CYCGRG 1 cut(s) 1562
BmgT120I GGNCC 2 cut(s) 272, 1251
BmiI GGNNCC 2 cut(s) 284, 662
BmrFI CCNGG 5 cut(s) 156, 276, 722, 1187, 1250
BmsI GCATC 3 cut(s) 773, 1309, 1539
BpiI GAAGAC 1 cut(s) 1248
BpmI CTGGAG 2 cut(s) 207, 1424
Bpu10I CCTNAGC 1 cut(s) 1087
Bpu1102I GCTNAGC 1 cut(s) 845
BpuEI CTTGAG 1 cut(s) 1733
BpuMI CCSGG 1 cut(s) 1250
BsaI GGTCTC 2 cut(s) 519, 573
BsaJI CCNNGG 4 cut(s) 154, 611, 720, 1114
Bsc4I CCNNNNNNNGG 3 cut(s) 453, 524, 891
Bse118I RCCGGY 2 cut(s) 410, 884
Bse1I ACTGG 4 cut(s) 903, 1212, 1407, 1591
BseBI CCWGG 4 cut(s) 156, 276, 722, 1187
BseDI CCNNGG 4 cut(s) 154, 611, 720, 1114
BseGI GGATG 4 cut(s) 716, 1363, 1554, 1744
BseLI CCNNNNNNNGG 3 cut(s) 453, 524, 891
BseMII CTCAG 1 cut(s) 1107
BseNI ACTGG 4 cut(s) 903, 1212, 1407, 1591
BseRI GAGGAG 2 cut(s) 56, 1640
BseSI GKGCMC 1 cut(s) 285
BseXI GCAGC 7 cut(s) 47, 253, 769, 773, 972, 1047, 1163
BseYI CCCAGC 2 cut(s) 16, 354
Bsh1236I CGCG 2 cut(s) 1149, 1537
BshFI GGCC 4 cut(s) 414, 1013, 1253, 1531
BshNI GGYRCC 1 cut(s) 282
BsiHKAI GWGCWC 1 cut(s) 1266
BsiHKCI CYCGRG 1 cut(s) 1562
BsiSI CCGG 4 cut(s) 411, 885, 1249, 1644
BslI CCNNNNNNNGG 3 cut(s) 453, 524, 891
BsmAI GTCTC 2 cut(s) 519, 573
BsnI GGCC 4 cut(s) 414, 1013, 1253, 1531
Bso31I GGTCTC 2 cut(s) 519, 573
BsoBI CYCGRG 1 cut(s) 1562
Bsp1286I GDGCHC 2 cut(s) 285, 1266
Bsp143I GATC 9 cut(s) 97, 128, 158, 213, 660, 713, 981, 1215, 1728
Bsp1720I GCTNAGC 1 cut(s) 845
BspACI CCGC 6 cut(s) 426, 629, 690, 1447, 1658, 1788
BspANI GGCC 4 cut(s) 414, 1013, 1253, 1531
BspCNI CTCAG 1 cut(s) 1106
BspFNI CGCG 2 cut(s) 1149, 1537
BspHI TCATGA 2 cut(s) 591, 906
BspLI GGNNCC 2 cut(s) 284, 662
BspMAI CTGCAG 1 cut(s) 271
BspPI GGATC 7 cut(s) 136, 166, 208, 655, 668, 721, 989
BspT107I GGYRCC 1 cut(s) 282
BspTNI GGTCTC 2 cut(s) 519, 573
BsrBI CCGCTC 1 cut(s) 631
BsrFI RCCGGY 2 cut(s) 410, 884
BsrI ACTGG 4 cut(s) 903, 1212, 1407, 1591
BssAI RCCGGY 2 cut(s) 410, 884
BssECI CCNNGG 4 cut(s) 154, 611, 720, 1114
BssMI GATC 9 cut(s) 97, 128, 158, 213, 660, 713, 981, 1215, 1728
BssNAI GTATAC 1 cut(s) 1663
BssSI CACGAG 1 cut(s) 946
BssT1I CCWWGG 1 cut(s) 1114
Bst1107I GTATAC 1 cut(s) 1663
Bst2BI CACGAG 1 cut(s) 946
Bst2UI CCWGG 4 cut(s) 156, 276, 722, 1187
Bst4CI ACNGT 2 cut(s) 826, 1270
Bst6I CTCTTC 1 cut(s) 389
BstC8I GCNNGC 5 cut(s) 444, 624, 1262, 1529, 1845
BstDEI CTNAG 4 cut(s) 551, 845, 1087, 1093
BstF5I GGATG 4 cut(s) 716, 1363, 1554, 1744
BstFNI CGCG 2 cut(s) 1149, 1537
BstHHI GCGC 2 cut(s) 1151, 1539
BstKTI GATC 9 cut(s) 100, 131, 161, 216, 663, 716, 984, 1218, 1731
BstMAI GTCTC 2 cut(s) 519, 573
BstMBI GATC 9 cut(s) 97, 128, 158, 213, 660, 713, 981, 1215, 1728
BstMWI GCNNNNNNNGC 4 cut(s) 77, 443, 628, 1558
BstNI CCWGG 4 cut(s) 156, 276, 722, 1187
BstNSI RCATGY 2 cut(s) 341, 1048
BstSCI CCNGG 5 cut(s) 154, 274, 720, 1185, 1248
BstSFI CTRYAG 4 cut(s) 267, 420, 794, 1480
BstSLI GKGCMC 1 cut(s) 285
BstUI CGCG 2 cut(s) 1149, 1537
BstV1I GCAGC 7 cut(s) 47, 253, 769, 773, 972, 1047, 1163
BstV2I GAAGAC 1 cut(s) 1248
BstX2I RGATCY 2 cut(s) 213, 660
BstXI CCANNNNNNTGG 1 cut(s) 162
BstYI RGATCY 2 cut(s) 213, 660
BstZ17I GTATAC 1 cut(s) 1663
BsuRI GGCC 4 cut(s) 414, 1013, 1253, 1531
BtsCI GGATG 4 cut(s) 716, 1363, 1554, 1744
BtsI GCAGTG 1 cut(s) 1055
BtsIMutI CAGTG 2 cut(s) 1055, 1266
Cac8I GCNNGC 5 cut(s) 444, 624, 1262, 1529, 1845
CaiI CAGNNNCTG 2 cut(s) 275, 1579
CciI TCATGA 2 cut(s) 591, 906
CfoI GCGC 2 cut(s) 1151, 1539
Cfr10I RCCGGY 2 cut(s) 410, 884
Cfr13I GGNCC 2 cut(s) 272, 1251
CsiI ACCWGGT 1 cut(s) 274
Csp6I GTAC 4 cut(s) 371, 804, 853, 1567
CviQI GTAC 4 cut(s) 371, 804, 853, 1567
DdeI CTNAG 4 cut(s) 551, 845, 1087, 1093
DpnI GATC 9 cut(s) 99, 130, 160, 215, 662, 715, 983, 1217, 1730
DpnII GATC 9 cut(s) 97, 128, 158, 213, 660, 713, 981, 1215, 1728
DrdI GACNNNNNNGTC 1 cut(s) 511
DseDI GACNNNNNNGTC 1 cut(s) 511
EaeI YGGCCR 1 cut(s) 412
Eam1104I CTCTTC 1 cut(s) 389
EarI CTCTTC 1 cut(s) 389
Eco130I CCWWGG 1 cut(s) 1114
Eco31I GGTCTC 2 cut(s) 519, 573
Eco47I GGWCC 1 cut(s) 272
Eco57I CTGAAG 1 cut(s) 939
Eco88I CYCGRG 1 cut(s) 1562
EcoO109I RGGNCCY 1 cut(s) 272
EcoRI GAATTC 3 cut(s) 349, 650, 1160
EcoRII CCWGG 4 cut(s) 154, 274, 720, 1185
EcoT14I CCWWGG 1 cut(s) 1114
ErhI CCWWGG 1 cut(s) 1114
FalI AAGNNNNNCTT 2 cut(s) 717, 749
FauI CCCGC 2 cut(s) 697, 1795
FbaI TGATCA 1 cut(s) 1215
FblI GTMKAC 1 cut(s) 1662
Fnu4HI GCNGC 8 cut(s) 61, 267, 762, 783, 961, 1036, 1152, 1447
FokI GGATG 4 cut(s) 703, 1370, 1561, 1751
Fsp4HI GCNGC 8 cut(s) 61, 267, 762, 783, 961, 1036, 1152, 1447
FspBI CTAG 3 cut(s) 1073, 1134, 1437
GlaI GCGC 2 cut(s) 1150, 1538
GluI GCNGC 8 cut(s) 61, 267, 762, 783, 961, 1036, 1152, 1447
GsaI CCCAGC 2 cut(s) 20, 358
GsuI CTGGAG 2 cut(s) 207, 1424
HaeIII GGCC 4 cut(s) 414, 1013, 1253, 1531
HapII CCGG 4 cut(s) 411, 885, 1249, 1644
HhaI GCGC 2 cut(s) 1151, 1539
Hin6I GCGC 2 cut(s) 1149, 1537
HinP1I GCGC 2 cut(s) 1149, 1537
HindIII AAGCTT 1 cut(s) 1637
HinfI GANTC 4 cut(s) 616, 704, 1508, 1601
HpaII CCGG 4 cut(s) 411, 885, 1249, 1644
HphI GGTGA 1 cut(s) 1738
Hpy166II GTNNAC 3 cut(s) 1377, 1663, 1758
Hpy188I TCNGA 5 cut(s) 136, 615, 866, 1096, 1274
Hpy8I GTNNAC 3 cut(s) 1377, 1663, 1758
HpyCH4III ACNGT 2 cut(s) 826, 1270
HpyF10VI GCNNNNNNNGC 4 cut(s) 77, 443, 628, 1558
HpyF3I CTNAG 4 cut(s) 551, 845, 1087, 1093
HspAI GCGC 2 cut(s) 1149, 1537
Ksp22I TGATCA 1 cut(s) 1215
Kzo9I GATC 9 cut(s) 97, 128, 158, 213, 660, 713, 981, 1215, 1728
LmnI GCTCC 5 cut(s) 43, 631, 1086, 1696, 1776
Lsp1109I GCAGC 7 cut(s) 47, 253, 769, 773, 972, 1047, 1163
LweI GCATC 3 cut(s) 773, 1309, 1539
MabI ACCWGGT 1 cut(s) 274
MaeI CTAG 3 cut(s) 1073, 1134, 1437
MaeIII GTNAC 2 cut(s) 502, 1054
MalI GATC 9 cut(s) 99, 130, 160, 215, 662, 715, 983, 1217, 1730
MbiI CCGCTC 1 cut(s) 631
MboI GATC 9 cut(s) 97, 128, 158, 213, 660, 713, 981, 1215, 1728
MboII GAAGA 6 cut(s) 406, 568, 664, 1191, 1253, 1531
MfeI CAATTG 2 cut(s) 297, 953
MflI RGATCY 2 cut(s) 213, 660
MhlI GDGCHC 2 cut(s) 285, 1266
MlyI GAGTC 2 cut(s) 713, 1610
MmeI TCCRAC 2 cut(s) 241, 1252
MseI TTAA 5 cut(s) 360, 840, 990, 998, 1716
MslI CAYNNNNRTG 2 cut(s) 258, 1370
MspA1I CMGCKG 1 cut(s) 1790
MspI CCGG 4 cut(s) 411, 885, 1249, 1644
MspR9I CCNGG 5 cut(s) 156, 276, 722, 1187, 1250
MunI CAATTG 2 cut(s) 297, 953
MvaI CCWGG 4 cut(s) 156, 276, 722, 1187
MvnI CGCG 2 cut(s) 1149, 1537
MwoI GCNNNNNNNGC 4 cut(s) 77, 443, 628, 1558
NciI CCSGG 1 cut(s) 1250
NdeII GATC 9 cut(s) 97, 128, 158, 213, 660, 713, 981, 1215, 1728
NlaIV GGNNCC 2 cut(s) 284, 662
NmuCI GTSAC 2 cut(s) 502, 1054
NspI RCATGY 2 cut(s) 341, 1048
PaeR7I CTCGAG 1 cut(s) 1562
PagI TCATGA 2 cut(s) 591, 906
PciI ACATGT 1 cut(s) 337
PcsI WCGNNNNNNNCGW 2 cut(s) 1392, 1503
PfeI GAWTC 2 cut(s) 616, 1508
PflMI CCANNNNNTGG 1 cut(s) 453
PkrI GCNGC 8 cut(s) 62, 268, 763, 784, 962, 1037, 1153, 1448
PleI GAGTC 2 cut(s) 712, 1609
PpsI GAGTC 2 cut(s) 712, 1609
PpuMI RGGWCCY 1 cut(s) 272
PscI ACATGT 1 cut(s) 337
Psp5II RGGWCCY 1 cut(s) 272
Psp6I CCWGG 4 cut(s) 154, 274, 720, 1185
PspFI CCCAGC 2 cut(s) 16, 354
PspGI CCWGG 4 cut(s) 154, 274, 720, 1185
PspN4I GGNNCC 2 cut(s) 284, 662
PspPI GGNCC 2 cut(s) 272, 1251
PspPPI RGGWCCY 1 cut(s) 272
PspXI VCTCGAGB 1 cut(s) 1562
PstI CTGCAG 1 cut(s) 271
PstNI CAGNNNCTG 2 cut(s) 275, 1579
PsuI RGATCY 2 cut(s) 213, 660
RsaI GTAC 4 cut(s) 372, 805, 854, 1568
RsaNI GTAC 4 cut(s) 371, 804, 853, 1567
RseI CAYNNNNRTG 2 cut(s) 258, 1370
SaqAI TTAA 5 cut(s) 360, 840, 990, 998, 1716
SatI GCNGC 8 cut(s) 61, 267, 762, 783, 961, 1036, 1152, 1447
Sau3AI GATC 9 cut(s) 97, 128, 158, 213, 660, 713, 981, 1215, 1728
Sau96I GGNCC 2 cut(s) 272, 1251
SchI GAGTC 2 cut(s) 713, 1610
ScrFI CCNGG 5 cut(s) 156, 276, 722, 1187, 1250
SduI GDGCHC 2 cut(s) 285, 1266
SexAI ACCWGGT 1 cut(s) 274
SfaNI GCATC 3 cut(s) 773, 1309, 1539
SfcI CTRYAG 4 cut(s) 267, 420, 794, 1480
Sfr274I CTCGAG 1 cut(s) 1562
SinI GGWCC 1 cut(s) 272
SlaI CTCGAG 1 cut(s) 1562
SmiMI CAYNNNNRTG 2 cut(s) 258, 1370
SmlI CTYRAG 2 cut(s) 1562, 1748
SmoI CTYRAG 2 cut(s) 1562, 1748
SsiI CCGC 6 cut(s) 426, 629, 690, 1447, 1658, 1788
SspMI CTAG 3 cut(s) 1073, 1134, 1437
StyD4I CCNGG 5 cut(s) 154, 274, 720, 1185, 1248
StyI CCWWGG 1 cut(s) 1114
TaaI ACNGT 2 cut(s) 826, 1270
TauI GCSGC 1 cut(s) 1449
TfiI GAWTC 2 cut(s) 616, 1508
Tru1I TTAA 5 cut(s) 360, 840, 990, 998, 1716
Tru9I TTAA 5 cut(s) 360, 840, 990, 998, 1716
TscAI CASTG 2 cut(s) 1055, 1273
TseFI GTSAC 2 cut(s) 502, 1054
TseI GCWGC 7 cut(s) 60, 266, 761, 782, 960, 1035, 1151
Tsp45I GTSAC 2 cut(s) 502, 1054
TspRI CASTG 2 cut(s) 1055, 1273
Van91I CCANNNNNTGG 1 cut(s) 453
VpaK11BI GGWCC 1 cut(s) 272
XapI RAATTY 5 cut(s) 349, 650, 682, 1160, 1293
XceI RCATGY 2 cut(s) 341, 1048
XcmI CCANNNNNNNNNTGG 1 cut(s) 1193
XhoI CTCGAG 1 cut(s) 1562
XmiI GTMKAC 1 cut(s) 1662
XspI CTAG 3 cut(s) 1073, 1134, 1437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.