MD06G1182800.v1.1

Lipase (class 3)

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Forward (+)
32134443 .. 32136908
2466 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1182800.v1.1.491

Sequence Viewer

Length: 1851 bp
ATGGGAAGTGAAAGGCTTGGAGAGAAGTTGAATATAAGCGAGGAGCTTATCAAGAAAAGCTGCTCTCTTGCCTTCAAAGCACACAAATCCCCAGATGATCTGTTTCATGTGGAGAAATCTGCTTCTGGATCATCAGATGCTGTTTTCAGCTTCCCAGGATCTTGGTCTGTGGAGAGTTGGGCTTCTGGAGAAAGTGCTTTTGGGGAAAAAACGATCCAACTTTCACTCTTTCCTTCCCTGAAAAACATAGGTTATTATGATGAAGCTACAGGACCTGGTGGGAACCAAGATTTTGCAATTGCAAGTTTCAACCAAGCCTTTTTGCAGAAGTTTGAACATGTATTGCAGAATTCCCAGCTTAAAAATAAGGTGCAAGAGGCTGTCAATGAAAAGAAGAGAATAGTATTTACCGGCCACTCTACAGGCGGCGCAACTGCCATGCTTGCCACAATCTGGTGCTTGGAAAATTACCCGAAACAAAGCAATGAAACATTTTTCTGTGTGACTTTCGGGTCTCCCCTTATTGGTAACCATATTATTTCCCATGCTCTTAGGAGAGAAAATTGGTCTCAATACTTCATACATTTTGTCATGAGATATGACATTATCCCTCGGATTCTGCTTGCTCCGCTCTCTTTGATTCAACATGAATTCGACAGGATCCTTCCCTTCTTCAACCCAAATTCCCCCGCCTATGCGAGTGAGCCGATTGGATCATCCCCGGAAGCCTTCTATTTGTTTAGAAATGTGATGAGAAATGCAGCATCTCTTACAACTCATGCTGCCTCCAAACTACAAGGGAGCACCAACCTATTACTCGAAACTGTAAAAAAGTTCGTTAAGCTAAGCCCGTACAAACCTTTCGGAACTTACATTTTTTGCACCGGCAACGGGAAACTGGTTGTCATGAAAAACCCTGAAGCTGTGCTGCAACTCTTGTTCTACTCGTGTCAATTGAGCAGCGAAAGTGAAGGGGCAAGGATCGTGCTCAAATGCTTAAACGAGCATTTGGCCTACGAAAATGAGCTTGAAGGCAGCTTGGAAATGCAGTGTGTGACTTATGATGATAACCTAGAAACGCTCCCCTTAGCCTCAGATGGTTTCTTTGATGACCTTGGCTTGAGCGAAAAGGCTAGATTATGCCTTCGCGCAGCGGGAGAATTCGAGAAGCAAAAACGAAGAAACCAGGAGAAAGTTGGTTCAAAAATGGAGATGATCACGAAACATTTGAAAATAATTGAAGACTACAGGGCCTTATGCGAGCACACTGTCGGATATTACGACGCCTTCAAAATTCATAAAAACAAGACAGATTTCGTTGCTAATTTGAGCAGGATTGAGCTAACAGGTATATGGGATGAGATCATCGAAATGTTGAAAAGATACGACCTCCCCGATGAACTGGAGGCTAAGAAAGAGTGGATAAACCTTGGAACTAGGTTTCGCCGCCTTGTCGAGCCTCTCGATGTTGCTAACTACTACAGGCACTCATTGGACGAAGATACCGGAACCTATATGAAGAAAGGCAGGCCAACGCGCCACAAATGGACGCAGAGATGGCTCGAGTTCGAACAGAAACTGCAAACTGGTTCATGCACGGAGTCCTGCTTCTGGGCAGATGTGGAGGAGTTGCACAAGCTTTCCGGCAACTTTGCGGCGGTATACGAGGAAAGGGAGAGAGTTTTGAGAGTTCAGGAGCAAGTAGGGCAATGGATTCAGGACGGGGTGATCGGTAAGGATGTGTTGCTCAAGTCGTCCACCTTCGAGGAATGGTGGAGCAAACTCCCCGCTGACCTAAAAACAGAAACGATTTCGCAACTTGTGAATGGTTTAGGAAATGTACAAGCGTAG

Protein Analysis

617

Amino Acids

70.14

Weight (kDa)

6.04

Isoelectric Point (pI)

45.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_3 PF01764 100 - 207 1.6e-20 Lipase (class 3)
EDS1_EP PF18117 413 - 607 1.4e-53 Enhanced disease susceptibility 1 protein EP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 511
AccB7I CCANNNNNTGG 1 cut(s) 453
AccBSI CCGCTC 1 cut(s) 631
AccI GTMKAC 1 cut(s) 1662
AccII CGCG 2 cut(s) 1149, 1537
AciI CCGC 8 cut(s) 426, 629, 690, 1154, 1447, 1655, 1658, 1788
AclWI GGATC 7 cut(s) 136, 166, 208, 655, 668, 721, 989
AcoI YGGCCR 1 cut(s) 412
AcsI RAATTY 5 cut(s) 349, 650, 682, 1160, 1293
AcuI CTGAAG 1 cut(s) 939
AcyI GRCGYC 1 cut(s) 1284
AfaI GTAC 2 cut(s) 854, 1842
AfiI CCNNNNNNNGG 4 cut(s) 453, 524, 891, 1611
AflIII ACRYGT 1 cut(s) 337
AjnI CCWGG 3 cut(s) 154, 274, 1185
AjuI GAANNNNNNNTTGG 2 cut(s) 183, 215
Alw21I GWGCWC 3 cut(s) 806, 990, 1266
Alw26I GTCTC 2 cut(s) 519, 573
AlwI GGATC 7 cut(s) 136, 166, 208, 655, 668, 721, 989
AlwNI CAGNNNCTG 3 cut(s) 140, 275, 1579
Ama87I CYCGRG 1 cut(s) 1562
AoxI GGCC 4 cut(s) 412, 1011, 1251, 1529
ApeKI GCWGC 7 cut(s) 60, 761, 782, 928, 960, 1035, 1151
ApoI RAATTY 5 cut(s) 349, 650, 682, 1160, 1293
AspLEI GCGC 3 cut(s) 431, 1151, 1539
AspS9I GGNCC 2 cut(s) 272, 1251
AsuC2I CCSGG 1 cut(s) 722
AsuHPI GGTGA 1 cut(s) 1738
AsuII TTCGAA 1 cut(s) 1569
AvaI CYCGRG 1 cut(s) 1562
AvaII GGWCC 1 cut(s) 272
BamHI GGATCC 1 cut(s) 660
BauI CACGAG 1 cut(s) 946
BbsI GAAGAC 1 cut(s) 1248
Bbv12I GWGCWC 3 cut(s) 806, 990, 1266
BbvI GCAGC 7 cut(s) 47, 769, 773, 915, 972, 1047, 1163
BccI CCATC 2 cut(s) 1091, 1551
BciT130I CCWGG 3 cut(s) 156, 276, 1187
BclI TGATCA 1 cut(s) 1215
BcnI CCSGG 1 cut(s) 722
BcoDI GTCTC 2 cut(s) 519, 573
BfaI CTAG 3 cut(s) 1073, 1134, 1437
BfmI CTRYAG 4 cut(s) 267, 420, 1246, 1480
BlpI GCTNAGC 1 cut(s) 845
Bme1390I CCNGG 4 cut(s) 156, 276, 722, 1187
Bme18I GGWCC 1 cut(s) 272
BmeT110I CYCGRG 1 cut(s) 1562
BmgT120I GGNCC 2 cut(s) 272, 1251
BmiI GGNNCC 3 cut(s) 284, 662, 1510
BmrFI CCNGG 4 cut(s) 156, 276, 722, 1187
BmsI GCATC 2 cut(s) 127, 773
BpiI GAAGAC 1 cut(s) 1248
BpmI CTGGAG 2 cut(s) 207, 1424
Bpu10I CCTNAGC 1 cut(s) 1087
Bpu1102I GCTNAGC 1 cut(s) 845
Bpu14I TTCGAA 1 cut(s) 1569
BpuEI CTTGAG 2 cut(s) 1141, 1733
BpuMI CCSGG 1 cut(s) 722
BsaHI GRCGYC 1 cut(s) 1284
BsaI GGTCTC 2 cut(s) 519, 573
BsaJI CCNNGG 5 cut(s) 154, 611, 720, 1114, 1429
BsaWI WCCGGW 1 cut(s) 1505
Bsc4I CCNNNNNNNGG 4 cut(s) 453, 524, 891, 1611
Bse118I RCCGGY 2 cut(s) 410, 884
Bse1I ACTGG 3 cut(s) 903, 1407, 1591
Bse3DI GCAATG 2 cut(s) 490, 1715
BseBI CCWGG 3 cut(s) 156, 276, 1187
BseDI CCNNGG 5 cut(s) 154, 611, 720, 1114, 1429
BseGI GGATG 3 cut(s) 716, 1363, 1744
BseLI CCNNNNNNNGG 4 cut(s) 453, 524, 891, 1611
BseMI GCAATG 2 cut(s) 490, 1715
BseMII CTCAG 1 cut(s) 1107
BseNI ACTGG 3 cut(s) 903, 1407, 1591
BseRI GAGGAG 2 cut(s) 56, 1640
BseXI GCAGC 7 cut(s) 47, 769, 773, 915, 972, 1047, 1163
BseYI CCCAGC 1 cut(s) 354
Bsh1236I CGCG 2 cut(s) 1149, 1537
BshFI GGCC 4 cut(s) 414, 1013, 1253, 1531
BsiHKAI GWGCWC 3 cut(s) 806, 990, 1266
BsiHKCI CYCGRG 1 cut(s) 1562
BsiSI CCGG 5 cut(s) 411, 722, 885, 1506, 1644
BslI CCNNNNNNNGG 4 cut(s) 453, 524, 891, 1611
BsmAI GTCTC 2 cut(s) 519, 573
BsnI GGCC 4 cut(s) 414, 1013, 1253, 1531
Bso31I GGTCTC 2 cut(s) 519, 573
BsoBI CYCGRG 1 cut(s) 1562
Bsp119I TTCGAA 1 cut(s) 1569
Bsp1286I GDGCHC 3 cut(s) 806, 990, 1266
Bsp1407I TGTACA 1 cut(s) 1840
Bsp1720I GCTNAGC 1 cut(s) 845
BspACI CCGC 8 cut(s) 426, 629, 690, 1154, 1447, 1655, 1658, 1788
BspANI GGCC 4 cut(s) 414, 1013, 1253, 1531
BspCNI CTCAG 1 cut(s) 1106
BspFNI CGCG 2 cut(s) 1149, 1537
BspHI TCATGA 2 cut(s) 591, 906
BspLI GGNNCC 3 cut(s) 284, 662, 1510
BspPI GGATC 7 cut(s) 136, 166, 208, 655, 668, 721, 989
BspT104I TTCGAA 1 cut(s) 1569
BspTNI GGTCTC 2 cut(s) 519, 573
BsrBI CCGCTC 1 cut(s) 631
BsrDI GCAATG 2 cut(s) 490, 1715
BsrFI RCCGGY 2 cut(s) 410, 884
BsrGI TGTACA 1 cut(s) 1840
BsrI ACTGG 3 cut(s) 903, 1407, 1591
BssAI RCCGGY 2 cut(s) 410, 884
BssECI CCNNGG 5 cut(s) 154, 611, 720, 1114, 1429
BssNAI GTATAC 1 cut(s) 1663
BssNI GRCGYC 1 cut(s) 1284
BssSI CACGAG 1 cut(s) 946
BssT1I CCWWGG 2 cut(s) 1114, 1429
Bst1107I GTATAC 1 cut(s) 1663
Bst2BI CACGAG 1 cut(s) 946
Bst2UI CCWGG 3 cut(s) 156, 276, 1187
Bst4CI ACNGT 2 cut(s) 826, 1270
Bst6I CTCTTC 1 cut(s) 389
BstACI GRCGYC 1 cut(s) 1284
BstAUI TGTACA 1 cut(s) 1840
BstBI TTCGAA 1 cut(s) 1569
BstC8I GCNNGC 4 cut(s) 444, 624, 1262, 1529
BstDEI CTNAG 5 cut(s) 551, 845, 1087, 1093, 1410
BstEII GGTNACC 1 cut(s) 527
BstF5I GGATG 3 cut(s) 716, 1363, 1744
BstFNI CGCG 2 cut(s) 1149, 1537
BstHHI GCGC 3 cut(s) 431, 1151, 1539
BstMAI GTCTC 2 cut(s) 519, 573
BstMWI GCNNNNNNNGC 5 cut(s) 77, 443, 628, 1558, 1705
BstNI CCWGG 3 cut(s) 156, 276, 1187
BstNSI RCATGY 1 cut(s) 341
BstPI GGTNACC 1 cut(s) 527
BstSCI CCNGG 4 cut(s) 154, 274, 720, 1185
BstSFI CTRYAG 4 cut(s) 267, 420, 1246, 1480
BstUI CGCG 2 cut(s) 1149, 1537
BstV1I GCAGC 7 cut(s) 47, 769, 773, 915, 972, 1047, 1163
BstV2I GAAGAC 1 cut(s) 1248
BstX2I RGATCY 2 cut(s) 158, 660
BstXI CCANNNNNNTGG 1 cut(s) 162
BstYI RGATCY 2 cut(s) 158, 660
BstZ17I GTATAC 1 cut(s) 1663
BsuRI GGCC 4 cut(s) 414, 1013, 1253, 1531
BtsCI GGATG 3 cut(s) 716, 1363, 1744
BtsI GCAGTG 1 cut(s) 1055
BtsIMutI CAGTG 2 cut(s) 1055, 1266
Cac8I GCNNGC 4 cut(s) 444, 624, 1262, 1529
CaiI CAGNNNCTG 3 cut(s) 140, 275, 1579
CciI TCATGA 2 cut(s) 591, 906
CfoI GCGC 3 cut(s) 431, 1151, 1539
Cfr10I RCCGGY 2 cut(s) 410, 884
Cfr13I GGNCC 2 cut(s) 272, 1251
CseI GACGC 2 cut(s) 1292, 1558
CsiI ACCWGGT 1 cut(s) 274
Csp6I GTAC 2 cut(s) 853, 1841
CviAII CATG 9 cut(s) 107, 338, 439, 545, 592, 647, 779, 907, 1593
CviQI GTAC 2 cut(s) 853, 1841
DdeI CTNAG 5 cut(s) 551, 845, 1087, 1093, 1410
DrdI GACNNNNNNGTC 1 cut(s) 511
DseDI GACNNNNNNGTC 1 cut(s) 511
EaeI YGGCCR 1 cut(s) 412
Eam1104I CTCTTC 1 cut(s) 389
EarI CTCTTC 1 cut(s) 389
Eco130I CCWWGG 2 cut(s) 1114, 1429
Eco31I GGTCTC 2 cut(s) 519, 573
Eco47I GGWCC 1 cut(s) 272
Eco57I CTGAAG 1 cut(s) 939
Eco88I CYCGRG 1 cut(s) 1562
Eco91I GGTNACC 1 cut(s) 527
EcoO109I RGGNCCY 2 cut(s) 272, 1251
EcoO65I GGTNACC 1 cut(s) 527
EcoRI GAATTC 3 cut(s) 349, 650, 1160
EcoRII CCWGG 3 cut(s) 154, 274, 1185
EcoT14I CCWWGG 2 cut(s) 1114, 1429
ErhI CCWWGG 2 cut(s) 1114, 1429
FaeI CATG 9 cut(s) 110, 341, 442, 548, 595, 650, 782, 910, 1596
FatI CATG 9 cut(s) 106, 337, 438, 544, 591, 646, 778, 906, 1592
FauI CCCGC 3 cut(s) 697, 1147, 1795
FbaI TGATCA 1 cut(s) 1215
FblI GTMKAC 1 cut(s) 1662
FokI GGATG 3 cut(s) 703, 1370, 1751
FspBI CTAG 3 cut(s) 1073, 1134, 1437
GlaI GCGC 3 cut(s) 430, 1150, 1538
GsaI CCCAGC 1 cut(s) 358
GsuI CTGGAG 2 cut(s) 207, 1424
HaeIII GGCC 4 cut(s) 414, 1013, 1253, 1531
HapII CCGG 5 cut(s) 411, 722, 885, 1506, 1644
HgaI GACGC 2 cut(s) 1292, 1558
HhaI GCGC 3 cut(s) 431, 1151, 1539
Hin1I GRCGYC 1 cut(s) 1284
Hin1II CATG 9 cut(s) 110, 341, 442, 548, 595, 650, 782, 910, 1596
Hin6I GCGC 3 cut(s) 429, 1149, 1537
HinP1I GCGC 3 cut(s) 429, 1149, 1537
HindIII AAGCTT 1 cut(s) 1637
HinfI GANTC 4 cut(s) 616, 640, 1601, 1714
HpaII CCGG 5 cut(s) 411, 722, 885, 1506, 1644
HphI GGTGA 1 cut(s) 1738
Hpy166II GTNNAC 2 cut(s) 1663, 1758
Hpy188I TCNGA 5 cut(s) 136, 615, 866, 1096, 1274
Hpy8I GTNNAC 2 cut(s) 1663, 1758
Hpy99I CGWCG 1 cut(s) 1286
HpyCH4III ACNGT 2 cut(s) 826, 1270
HpyF10VI GCNNNNNNNGC 5 cut(s) 77, 443, 628, 1558, 1705
HpyF3I CTNAG 5 cut(s) 551, 845, 1087, 1093, 1410
Hsp92I GRCGYC 1 cut(s) 1284
Hsp92II CATG 9 cut(s) 110, 341, 442, 548, 595, 650, 782, 910, 1596
HspAI GCGC 3 cut(s) 429, 1149, 1537
Ksp22I TGATCA 1 cut(s) 1215
LmnI GCTCC 6 cut(s) 43, 631, 801, 1086, 1696, 1776
Lsp1109I GCAGC 7 cut(s) 47, 769, 773, 915, 972, 1047, 1163
LweI GCATC 2 cut(s) 127, 773
MabI ACCWGGT 1 cut(s) 274
MaeI CTAG 3 cut(s) 1073, 1134, 1437
MaeIII GTNAC 3 cut(s) 502, 527, 1054
MbiI CCGCTC 1 cut(s) 631
MboII GAAGA 6 cut(s) 406, 664, 1191, 1253, 1511, 1531
MfeI CAATTG 2 cut(s) 297, 953
MflI RGATCY 2 cut(s) 158, 660
MhlI GDGCHC 3 cut(s) 806, 990, 1266
MlyI GAGTC 1 cut(s) 1610
MmeI TCCRAC 2 cut(s) 241, 1252
MseI TTAA 3 cut(s) 360, 840, 998
MslI CAYNNNNRTG 1 cut(s) 1370
MspA1I CMGCKG 2 cut(s) 1154, 1790
MspI CCGG 5 cut(s) 411, 722, 885, 1506, 1644
MspR9I CCNGG 4 cut(s) 156, 276, 722, 1187
MunI CAATTG 2 cut(s) 297, 953
MvaI CCWGG 3 cut(s) 156, 276, 1187
MvnI CGCG 2 cut(s) 1149, 1537
MwoI GCNNNNNNNGC 5 cut(s) 77, 443, 628, 1558, 1705
NciI CCSGG 1 cut(s) 722
NlaIII CATG 9 cut(s) 110, 341, 442, 548, 595, 650, 782, 910, 1596
NlaIV GGNNCC 3 cut(s) 284, 662, 1510
NmuCI GTSAC 2 cut(s) 502, 1054
NspI RCATGY 1 cut(s) 341
NspV TTCGAA 1 cut(s) 1569
PaeR7I CTCGAG 1 cut(s) 1562
PagI TCATGA 2 cut(s) 591, 906
PciI ACATGT 1 cut(s) 337
PcsI WCGNNNNNNNCGW 3 cut(s) 1278, 1392, 1461
PfeI GAWTC 3 cut(s) 616, 640, 1714
PflMI CCANNNNNTGG 1 cut(s) 453
PleI GAGTC 1 cut(s) 1609
PpsI GAGTC 1 cut(s) 1609
PpuMI RGGWCCY 1 cut(s) 272
PscI ACATGT 1 cut(s) 337
Psp5II RGGWCCY 1 cut(s) 272
Psp6I CCWGG 3 cut(s) 154, 274, 1185
PspEI GGTNACC 1 cut(s) 527
PspFI CCCAGC 1 cut(s) 354
PspGI CCWGG 3 cut(s) 154, 274, 1185
PspN4I GGNNCC 3 cut(s) 284, 662, 1510
PspPI GGNCC 2 cut(s) 272, 1251
PspPPI RGGWCCY 1 cut(s) 272
PspXI VCTCGAGB 1 cut(s) 1562
PstNI CAGNNNCTG 3 cut(s) 140, 275, 1579
PsuI RGATCY 2 cut(s) 158, 660
RsaI GTAC 2 cut(s) 854, 1842
RsaNI GTAC 2 cut(s) 853, 1841
RseI CAYNNNNRTG 1 cut(s) 1370
SaqAI TTAA 3 cut(s) 360, 840, 998
Sau96I GGNCC 2 cut(s) 272, 1251
SchI GAGTC 1 cut(s) 1610
ScrFI CCNGG 4 cut(s) 156, 276, 722, 1187
SduI GDGCHC 3 cut(s) 806, 990, 1266
SexAI ACCWGGT 1 cut(s) 274
SfaNI GCATC 2 cut(s) 127, 773
SfcI CTRYAG 4 cut(s) 267, 420, 1246, 1480
Sfr274I CTCGAG 1 cut(s) 1562
SfuI TTCGAA 1 cut(s) 1569
SinI GGWCC 1 cut(s) 272
SlaI CTCGAG 1 cut(s) 1562
SmiMI CAYNNNNRTG 1 cut(s) 1370
SmlI CTYRAG 3 cut(s) 1120, 1562, 1748
SmoI CTYRAG 3 cut(s) 1120, 1562, 1748
SsiI CCGC 8 cut(s) 426, 629, 690, 1154, 1447, 1655, 1658, 1788
SspMI CTAG 3 cut(s) 1073, 1134, 1437
StyD4I CCNGG 4 cut(s) 154, 274, 720, 1185
StyI CCWWGG 2 cut(s) 1114, 1429
TaaI ACNGT 2 cut(s) 826, 1270
TaqI TCGA 9 cut(s) 654, 819, 1164, 1368, 1455, 1464, 1563, 1569, 1764
TatI WGTACW 1 cut(s) 1840
TauI GCSGC 3 cut(s) 429, 1449, 1658
TfiI GAWTC 3 cut(s) 616, 640, 1714
Tru1I TTAA 3 cut(s) 360, 840, 998
Tru9I TTAA 3 cut(s) 360, 840, 998
TscAI CASTG 2 cut(s) 1055, 1273
TseFI GTSAC 2 cut(s) 502, 1054
TseI GCWGC 7 cut(s) 60, 761, 782, 928, 960, 1035, 1151
Tsp45I GTSAC 2 cut(s) 502, 1054
TspGWI ACGGA 1 cut(s) 1613
TspRI CASTG 2 cut(s) 1055, 1273
Van91I CCANNNNNTGG 1 cut(s) 453
VpaK11BI GGWCC 1 cut(s) 272
XapI RAATTY 5 cut(s) 349, 650, 682, 1160, 1293
XceI RCATGY 1 cut(s) 341
XcmI CCANNNNNNNNNTGG 1 cut(s) 1193
XhoI CTCGAG 1 cut(s) 1562
XmiI GTMKAC 1 cut(s) 1662
XspI CTAG 3 cut(s) 1073, 1134, 1437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.