Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012837

Physical Location & Seq

Genomic Coordinates Reverse (-)

17758427 .. 17760950

Gene Structure 2524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G48100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGCTGAGGTTTTGCGTCCCGAGATGTTAGATATCTCTAACGACACTTCTTCATTAGCATCACCGAAACTTCTTCATGTTCTTGCTGTTGATGATAGTATGGTTGATCGGAAGTTCATCGAGCGGTTACTCAGAGTCTCATCTTGTAAAGTTACTGTTGTCGATAGTGCGACAAGAGCTTTACAATATCTTGGATTAGATGGAGAGAATAATAGTTCGGTTGGATTTGAGGATCTGAAGATTAATTTGATAATGACGGATTACTCTATGCCTGGGATGACTGGATATGAACTACTGAAGAAGATCAAAGAATCATCAGCTTTCAGAGAAATACCAGTTGTGATTATGTCTTCAGAGAACATCTTGCCTCGTATCGATAGATGTCTTGAAGAAGGAGCTGAAGATTTCTTATTGAAGCCTGTGAAATTAGCTGATGTGAAGAGATTAAGAGATTCTTTAATGAAAGCTGAGGAAAGAGCTTTTAAGAATATTATGCACAAGAGAGAGCTTGAAGCTAATGATATCTACTCGCAGCTAAAACGCGCAAAGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010114 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:0098727 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

184

Amino Acids

20.88

Weight (kDa)

5.82

Isoelectric Point (pI)

50.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	27 - 146	2.2e-19	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012837)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48100 AT5G62920
fragaria_vesca	FvH4_5g16240
malus_domestica	MD06G1182400.v1.1 MD14G1188400.v1.1
prunus_persica	Prupe.5G180500_v2.0.a1 Prupe.5G180500_v2.0.a1
pyrus_communis	pycom06g16130 pycom14g15610
rosa_chinensis	RchiOBHm_Chr7g0179851
rosa_laevigata	RLG00000005318
rosa_roxburghii	Rroxscaffold_3G00273400
rosa_rugosa	Rorug06G0428800
rosa_samantha	Rh7AG028600 Rh7BG027800 Rh7CG029500 Rh7DG028900
rosa_wichuraiana	Rw7G002290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	124
AccII	CGCG	1 cut(s)	543
AciI	CCGC	1 cut(s)	124
AclWI	GGATC	1 cut(s)	240
AcuI	CTGAAG	4 cut(s)	257, 317, 336, 420
AgsI	TTSAA	3 cut(s)	389, 415, 512
AjnI	CCWGG	1 cut(s)	271
AluBI	AGCT	9 cut(s)	179, 320, 398, 431, 467, 479, 508, 515, 535
AluI	AGCT	9 cut(s)	179, 320, 398, 431, 467, 479, 508, 515, 535
Alw26I	GTCTC	1 cut(s)	142
AlwI	GGATC	1 cut(s)	240
Ama87I	CYCGRG	1 cut(s)	20
ApeKI	GCWGC	1 cut(s)	532
AseI	ATTAAT	1 cut(s)	243
AspLEI	GCGC	1 cut(s)	545
AsuHPI	GGTGA	1 cut(s)	54
AvaI	CYCGRG	1 cut(s)	20
BbsI	GAAGAC	1 cut(s)	342
BbvCI	CCTCAGC	2 cut(s)	6, 468
BbvI	GCAGC	1 cut(s)	544
BccI	CCATC	1 cut(s)	194
BciT130I	CCWGG	1 cut(s)	273
BcoDI	GTCTC	1 cut(s)	142
BglII	AGATCT	1 cut(s)	549
BisI	GCNGC	1 cut(s)	533
BlsI	GCNGC	1 cut(s)	534
Bme1390I	CCNGG	1 cut(s)	273
BmeT110I	CYCGRG	1 cut(s)	20
BmrFI	CCNGG	1 cut(s)	273
BmsI	GCATC	1 cut(s)	68
BpiI	GAAGAC	1 cut(s)	342
Bpu10I	CCTNAGC	2 cut(s)	6, 468
Bsa29I	ATCGAT	1 cut(s)	375
BsaJI	CCNNGG	1 cut(s)	272
Bse1I	ACTGG	2 cut(s)	286, 335
BseBI	CCWGG	1 cut(s)	273
BseCI	ATCGAT	1 cut(s)	375
BseDI	CCNNGG	1 cut(s)	272
BseGI	GGATG	1 cut(s)	282
BseMII	CTCAG	2 cut(s)	145, 459
BseNI	ACTGG	2 cut(s)	286, 335
BseXI	GCAGC	1 cut(s)	544
Bsh1236I	CGCG	1 cut(s)	543
BshVI	ATCGAT	1 cut(s)	375
BsiHKCI	CYCGRG	1 cut(s)	20
BslFI	GGGAC	1 cut(s)	3
BsmAI	GTCTC	1 cut(s)	142
BsmFI	GGGAC	1 cut(s)	3
BsoBI	CYCGRG	1 cut(s)	20
Bsp143I	GATC	4 cut(s)	106, 232, 303, 549
BspACI	CCGC	1 cut(s)	124
BspCNI	CTCAG	2 cut(s)	144, 460
BspDI	ATCGAT	1 cut(s)	375
BspFNI	CGCG	1 cut(s)	543
BspPI	GGATC	1 cut(s)	240
BsrBI	CCGCTC	1 cut(s)	124
BsrI	ACTGG	2 cut(s)	286, 335
BssECI	CCNNGG	1 cut(s)	272
BssMI	GATC	4 cut(s)	106, 232, 303, 549
Bst2UI	CCWGG	1 cut(s)	273
Bst4CI	ACNGT	1 cut(s)	157
Bst6I	CTCTTC	1 cut(s)	434
BstDEI	CTNAG	3 cut(s)	6, 131, 468
BstF5I	GGATG	1 cut(s)	282
BstFNI	CGCG	1 cut(s)	543
BstHHI	GCGC	1 cut(s)	545
BstKTI	GATC	4 cut(s)	109, 235, 306, 552
BstMAI	GTCTC	1 cut(s)	142
BstMBI	GATC	4 cut(s)	106, 232, 303, 549
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstNI	CCWGG	1 cut(s)	273
BstSCI	CCNGG	1 cut(s)	271
BstUI	CGCG	1 cut(s)	543
BstV1I	GCAGC	1 cut(s)	544
BstV2I	GAAGAC	1 cut(s)	342
BstX2I	RGATCY	2 cut(s)	232, 549
BstYI	RGATCY	2 cut(s)	232, 549
Bsu15I	ATCGAT	1 cut(s)	375
BsuTUI	ATCGAT	1 cut(s)	375
BtsCI	GGATG	1 cut(s)	282
CfoI	GCGC	1 cut(s)	545
ClaI	ATCGAT	1 cut(s)	375
CseI	GACGC	1 cut(s)	5
CviAII	CATG	1 cut(s)	77
DdeI	CTNAG	3 cut(s)	6, 131, 468
DpnI	GATC	4 cut(s)	108, 234, 305, 551
DpnII	GATC	4 cut(s)	106, 232, 303, 549
Eam1104I	CTCTTC	1 cut(s)	434
EarI	CTCTTC	1 cut(s)	434
Eco32I	GATATC	2 cut(s)	34, 523
Eco57I	CTGAAG	4 cut(s)	257, 317, 336, 420
Eco88I	CYCGRG	1 cut(s)	20
EcoRII	CCWGG	1 cut(s)	271
EcoRV	GATATC	2 cut(s)	34, 523
FaeI	CATG	1 cut(s)	80
FaiI	YATR	6 cut(s)	78, 101, 269, 288, 347, 494
FalI	AAGNNNNNCTT	2 cut(s)	439, 471
FaqI	GGGAC	1 cut(s)	3
FatI	CATG	1 cut(s)	76
Fnu4HI	GCNGC	1 cut(s)	533
FokI	GGATG	1 cut(s)	289
Fsp4HI	GCNGC	1 cut(s)	533
GlaI	GCGC	1 cut(s)	544
GluI	GCNGC	1 cut(s)	533
HgaI	GACGC	1 cut(s)	5
HhaI	GCGC	1 cut(s)	545
Hin1II	CATG	1 cut(s)	80
Hin6I	GCGC	1 cut(s)	543
HinP1I	GCGC	1 cut(s)	543
HinfI	GANTC	3 cut(s)	135, 311, 452
HphI	GGTGA	1 cut(s)	54
Hpy188I	TCNGA	6 cut(s)	111, 134, 237, 326, 355, 554
Hpy188III	TCNNGA	2 cut(s)	20, 386
HpyAV	CCTTC	1 cut(s)	386
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4V	TGCA	1 cut(s)	496
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
HpyF3I	CTNAG	3 cut(s)	6, 131, 468
Hsp92II	CATG	1 cut(s)	80
HspAI	GCGC	1 cut(s)	543
Kzo9I	GATC	4 cut(s)	106, 232, 303, 549
LmnI	GCTCC	1 cut(s)	395
LpnPI	CCDG	5 cut(s)	258, 267, 285, 348, 432
Lsp1109I	GCAGC	1 cut(s)	544
LweI	GCATC	1 cut(s)	68
MaeIII	GTNAC	2 cut(s)	126, 151
MalI	GATC	4 cut(s)	108, 234, 305, 551
MbiI	CCGCTC	1 cut(s)	124
MboI	GATC	4 cut(s)	106, 232, 303, 549
MboII	GAAGA	9 cut(s)	42, 65, 250, 310, 313, 342, 401, 413, 451
MflI	RGATCY	2 cut(s)	232, 549
MluCI	AATT	2 cut(s)	244, 425
MlyI	GAGTC	1 cut(s)	144
MmeI	TCCRAC	1 cut(s)	202
MnlI	CCTC	3 cut(s)	223, 378, 463
MseI	TTAA	4 cut(s)	243, 446, 458, 483
MspR9I	CCNGG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	273
MvnI	CGCG	1 cut(s)	543
MwoI	GCNNNNNNNGC	1 cut(s)	176
NdeII	GATC	4 cut(s)	106, 232, 303, 549
NlaIII	CATG	1 cut(s)	80
PfeI	GAWTC	2 cut(s)	311, 452
PkrI	GCNGC	1 cut(s)	534
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
PshBI	ATTAAT	1 cut(s)	243
Psp6I	CCWGG	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	271
PsuI	RGATCY	2 cut(s)	232, 549
SaqAI	TTAA	4 cut(s)	243, 446, 458, 483
SatI	GCNGC	1 cut(s)	533
Sau3AI	GATC	4 cut(s)	106, 232, 303, 549
SchI	GAGTC	1 cut(s)	144
ScrFI	CCNGG	1 cut(s)	273
SfaNI	GCATC	1 cut(s)	68
Sse9I	AATT	2 cut(s)	244, 425
SsiI	CCGC	1 cut(s)	124
SspI	AATATT	1 cut(s)	490
StyD4I	CCNGG	1 cut(s)	271
TaaI	ACNGT	1 cut(s)	157
TaqI	TCGA	3 cut(s)	120, 162, 375
TasI	AATT	2 cut(s)	244, 425
TfiI	GAWTC	2 cut(s)	311, 452
Tru1I	TTAA	4 cut(s)	243, 446, 458, 483
Tru9I	TTAA	4 cut(s)	243, 446, 458, 483
TseI	GCWGC	1 cut(s)	532
TspDTI	ATGAA	5 cut(s)	42, 65, 106, 303, 476
TspGWI	ACGGA	1 cut(s)	272
VspI	ATTAAT	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.