Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0012837

Physical Location & Seq

Genomic Coordinates Forward (+)

2105235 .. 2107904

Gene Structure 2670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG029500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGAAGGTGAATCTAATAATAACAGACTACTCAATGCCTGGGATGACAGGATATGAGCTGCTAAAAAAGATCAAGGAATCATCAGCTTTTAGAGAAGTTCCAGTGGTGATCATGTCCTCAGAGAACATCCTCACTCGAATCGATAGATGTTTGGAGGAAGGAGCTGAAGAGTTTATAGTAAAGCCGGTAAAACTTTCAGATGTGAACCGCTTGAAAAATTTCATGATGGGAGGAGAAAGAAAAGAGAAAGGAGCGAAGAAGGTTCAGAAAAGACCGCTTCAAGTTGACTACAACAATTCTTCATCGGCACCCTCGCCTTTACCACAACTGTCACCATCATTTGCTTGTAATCTAGCATCACTTCACTCATCACCATCTTCATCGCCATCATCTCCCCTACCCAGATGTGCCTCAAAGAGACCTAGATTGCACAGTATGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010114 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:0098727 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

147

Amino Acids

16.31

Weight (kDa)

9.48

Isoelectric Point (pI)

67.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	2 - 67	1.7e-14	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012837)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48100 AT5G62920
fragaria_vesca	FvH4_5g16240
malus_domestica	MD06G1182400.v1.1 MD14G1188400.v1.1
prunus_persica	Prupe.5G180500_v2.0.a1 Prupe.5G180500_v2.0.a1
pyrus_communis	pycom06g16130 pycom14g15610
rosa_chinensis	RchiOBHm_Chr7g0179851
rosa_laevigata	RLG00000005318
rosa_roxburghii	Rroxscaffold_3G00273400
rosa_rugosa	Rorug06G0428800
rosa_samantha	Rh7AG028600 Rh7BG027800 Rh7CG029500 Rh7DG028900
rosa_wichuraiana	Rw7G002290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	307
AciI	CCGC	2 cut(s)	208, 275
AcsI	RAATTY	1 cut(s)	217
AcuI	CTGAAG	1 cut(s)	186
AgsI	TTSAA	2 cut(s)	214, 281
AjnI	CCWGG	1 cut(s)	37
AluBI	AGCT	3 cut(s)	58, 86, 164
AluI	AGCT	3 cut(s)	58, 86, 164
Alw26I	GTCTC	1 cut(s)	412
ApeKI	GCWGC	1 cut(s)	58
ApoI	RAATTY	1 cut(s)	217
Asp700I	GAANNNNTTC	1 cut(s)	218
AsuHPI	GGTGA	4 cut(s)	19, 118, 324, 363
BanI	GGYRCC	1 cut(s)	307
BbvI	GCAGC	1 cut(s)	45
BccI	CCATC	4 cut(s)	220, 343, 382, 394
BciT130I	CCWGG	1 cut(s)	39
BclI	TGATCA	1 cut(s)	108
BcoDI	GTCTC	1 cut(s)	412
BfaI	CTAG	2 cut(s)	353, 423
BisI	GCNGC	1 cut(s)	59
BlsI	GCNGC	1 cut(s)	60
Bme1390I	CCNGG	1 cut(s)	39
BmiI	GGNNCC	1 cut(s)	309
BmrFI	CCNGG	1 cut(s)	39
BmsI	GCATC	1 cut(s)	365
Bsa29I	ATCGAT	1 cut(s)	141
BsaI	GGTCTC	1 cut(s)	412
BsaJI	CCNNGG	1 cut(s)	38
Bse118I	RCCGGY	1 cut(s)	184
Bse1I	ACTGG	1 cut(s)	101
BseBI	CCWGG	1 cut(s)	39
BseCI	ATCGAT	1 cut(s)	141
BseDI	CCNNGG	1 cut(s)	38
BseGI	GGATG	2 cut(s)	48, 126
BseMII	CTCAG	1 cut(s)	132
BseNI	ACTGG	1 cut(s)	101
BseRI	GAGGAG	1 cut(s)	246
BseXI	GCAGC	1 cut(s)	45
BshNI	GGYRCC	1 cut(s)	307
BshVI	ATCGAT	1 cut(s)	141
BsiSI	CCGG	1 cut(s)	185
BsmAI	GTCTC	1 cut(s)	412
Bso31I	GGTCTC	1 cut(s)	412
Bsp143I	GATC	2 cut(s)	69, 108
BspACI	CCGC	2 cut(s)	208, 275
BspCNI	CTCAG	1 cut(s)	131
BspDI	ATCGAT	1 cut(s)	141
BspHI	TCATGA	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	309
BspT107I	GGYRCC	1 cut(s)	307
BspTNI	GGTCTC	1 cut(s)	412
BsrFI	RCCGGY	1 cut(s)	184
BsrI	ACTGG	1 cut(s)	101
BssAI	RCCGGY	1 cut(s)	184
BssECI	CCNNGG	1 cut(s)	38
BssMI	GATC	2 cut(s)	69, 108
Bst2UI	CCWGG	1 cut(s)	39
Bst4CI	ACNGT	2 cut(s)	330, 434
Bst6I	CTCTTC	1 cut(s)	162
BstDEI	CTNAG	1 cut(s)	118
BstF5I	GGATG	2 cut(s)	48, 126
BstKTI	GATC	2 cut(s)	72, 111
BstMAI	GTCTC	1 cut(s)	412
BstMBI	GATC	2 cut(s)	69, 108
BstNI	CCWGG	1 cut(s)	39
BstSCI	CCNGG	1 cut(s)	37
BstV1I	GCAGC	1 cut(s)	45
Bsu15I	ATCGAT	1 cut(s)	141
BsuTUI	ATCGAT	1 cut(s)	141
BtgZI	GCGATG	1 cut(s)	366
BtsCI	GGATG	2 cut(s)	48, 126
BtsIMutI	CAGTG	1 cut(s)	108
CciI	TCATGA	1 cut(s)	222
Cfr10I	RCCGGY	1 cut(s)	184
ClaI	ATCGAT	1 cut(s)	141
CviAII	CATG	2 cut(s)	112, 223
CviJI	RGCY	4 cut(s)	58, 86, 164, 184
CviKI_1	RGCY	4 cut(s)	58, 86, 164, 184
DdeI	CTNAG	1 cut(s)	118
DpnI	GATC	2 cut(s)	71, 110
DpnII	GATC	2 cut(s)	69, 108
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
Eco31I	GGTCTC	1 cut(s)	412
Eco57I	CTGAAG	1 cut(s)	186
EcoRII	CCWGG	1 cut(s)	37
FaeI	CATG	2 cut(s)	115, 226
FaiI	YATR	5 cut(s)	54, 113, 176, 224, 437
FatI	CATG	2 cut(s)	111, 222
FbaI	TGATCA	1 cut(s)	108
Fnu4HI	GCNGC	1 cut(s)	59
FokI	GGATG	2 cut(s)	55, 113
Fsp4HI	GCNGC	1 cut(s)	59
FspBI	CTAG	2 cut(s)	353, 423
GluI	GCNGC	1 cut(s)	59
HapII	CCGG	1 cut(s)	185
Hin1II	CATG	2 cut(s)	115, 226
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HinfI	GANTC	3 cut(s)	10, 77, 138
HpaII	CCGG	1 cut(s)	185
HphI	GGTGA	4 cut(s)	19, 118, 324, 363
Hpy166II	GTNNAC	2 cut(s)	205, 286
Hpy188I	TCNGA	3 cut(s)	121, 199, 267
Hpy188III	TCNNGA	1 cut(s)	223
Hpy8I	GTNNAC	2 cut(s)	205, 286
HpyAV	CCTTC	2 cut(s)	152, 253
HpyCH4III	ACNGT	2 cut(s)	330, 434
HpyCH4V	TGCA	1 cut(s)	430
HpyF3I	CTNAG	1 cut(s)	118
Hsp92II	CATG	2 cut(s)	115, 226
Ksp22I	TGATCA	1 cut(s)	108
Kzo9I	GATC	2 cut(s)	69, 108
LmnI	GCTCC	2 cut(s)	161, 251
LpnPI	CCDG	6 cut(s)	24, 33, 51, 114, 198, 415
Lsp1109I	GCAGC	1 cut(s)	45
LweI	GCATC	1 cut(s)	365
MaeI	CTAG	2 cut(s)	353, 423
MaeIII	GTNAC	1 cut(s)	330
MalI	GATC	2 cut(s)	71, 110
MboI	GATC	2 cut(s)	69, 108
MboII	GAAGA	4 cut(s)	179, 268, 291, 369
MluCI	AATT	2 cut(s)	217, 295
MnlI	CCTC	6 cut(s)	127, 140, 148, 224, 322, 421
MroXI	GAANNNNTTC	1 cut(s)	218
MspI	CCGG	1 cut(s)	185
MspR9I	CCNGG	1 cut(s)	39
MvaI	CCWGG	1 cut(s)	39
NdeII	GATC	2 cut(s)	69, 108
NlaIII	CATG	2 cut(s)	115, 226
NlaIV	GGNNCC	1 cut(s)	309
NmuCI	GTSAC	1 cut(s)	330
PagI	TCATGA	1 cut(s)	222
PdmI	GAANNNNTTC	1 cut(s)	218
PfeI	GAWTC	3 cut(s)	10, 77, 138
PkrI	GCNGC	1 cut(s)	60
Psp6I	CCWGG	1 cut(s)	37
PspGI	CCWGG	1 cut(s)	37
PspN4I	GGNNCC	1 cut(s)	309
SatI	GCNGC	1 cut(s)	59
Sau3AI	GATC	2 cut(s)	69, 108
ScrFI	CCNGG	1 cut(s)	39
SetI	ASST	6 cut(s)	9, 60, 88, 166, 264, 424
SfaNI	GCATC	1 cut(s)	365
Sse9I	AATT	2 cut(s)	217, 295
SsiI	CCGC	2 cut(s)	208, 275
SspMI	CTAG	2 cut(s)	353, 423
StyD4I	CCNGG	1 cut(s)	37
TaaI	ACNGT	2 cut(s)	330, 434
TaqI	TCGA	2 cut(s)	136, 141
TasI	AATT	2 cut(s)	217, 295
TfiI	GAWTC	3 cut(s)	10, 77, 138
TscAI	CASTG	1 cut(s)	108
TseFI	GTSAC	1 cut(s)	330
TseI	GCWGC	1 cut(s)	58
Tsp45I	GTSAC	1 cut(s)	330
TspDTI	ATGAA	4 cut(s)	17, 211, 291, 369
TspRI	CASTG	1 cut(s)	108
XapI	RAATTY	1 cut(s)	217
XmnI	GAANNNNTTC	1 cut(s)	218
XspI	CTAG	2 cut(s)	353, 423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.