Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0012837

Physical Location & Seq

Genomic Coordinates Forward (+)

20539964 .. 20542226

Gene Structure 2263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g16130.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCGACGGCAGGCGAGATTCTCAGGCGGAATCTGACCGAAAGTTTTGATCTTTCCGGTGATTCGCAGATGGGTTCCGGCGAGCTGCATGTTCTTGCTGTGGATGACAGCCACGTGGACCGGAAGGTCATTGAACGCCTGCTCAAGATATCATCCTGCAAAGTGACGGCTGTTGACAGTGGGACCAGAGCGCTGCAATATCTGGGCTTGGATGGAGAGAAGAGCTCGGTTGGGTTTGATAACATGAAGGTGAATTTAATCATAACGGACTATTCAATGCCAGGGATGACAGGATATGAACTGCTAAAGAAAATCAAGGAATCATCGGCTTTTCGAGAAGTTCCGGTGGTGATCATGTCATCGGAGAACATCCTGACTCAAATTGATAGATGCTTAGAGGAAGGAGCTGAGGACTATATAGTGAAGCCGGTGAAGCTTTCCGACGTGAACCGGTTGAAAAACTTCATGATGGGAGGAGGAGAAAAAAAAGAAACTGAAGAGAAAAAAAATCACAAAAGAACATTTTCAGTTGACTACAATGCATCATCAACTCCCTCCCCCTTACCGCTGCTTACGCAACCGTTCGCTTGCAATCTAGCATCGTCTCAGCTGCCACCTTTGTCGCCATCATCGCCGTTGCCATGTTCATCATCAAAGAGACCGAGATTGCACAAGATGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010114 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:0098727 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

228

Amino Acids

25.0

Weight (kDa)

6.45

Isoelectric Point (pI)

60.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012837)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48100 AT5G62920
fragaria_vesca	FvH4_5g16240
malus_domestica	MD06G1182400.v1.1 MD14G1188400.v1.1
prunus_persica	Prupe.5G180500_v2.0.a1 Prupe.5G180500_v2.0.a1
pyrus_communis	pycom06g16130 pycom14g15610
rosa_chinensis	RchiOBHm_Chr7g0179851
rosa_laevigata	RLG00000005318
rosa_roxburghii	Rroxscaffold_3G00273400
rosa_rugosa	Rorug06G0428800
rosa_samantha	Rh7AG028600 Rh7BG027800 Rh7CG029500 Rh7DG028900
rosa_wichuraiana	Rw7G002290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	125
AciI	CCGC	2 cut(s)	28, 566
AcsI	RAATTY	1 cut(s)	253
AcuI	CTGAAG	1 cut(s)	516
AcvI	CACGTG	1 cut(s)	115
AfeI	AGCGCT	1 cut(s)	192
AgeI	ACCGGT	1 cut(s)	450
AgsI	TTSAA	3 cut(s)	134, 276, 457
AjiI	CACGTC	1 cut(s)	445
AjnI	CCWGG	1 cut(s)	280
AluBI	AGCT	5 cut(s)	85, 225, 407, 436, 610
AluI	AGCT	5 cut(s)	85, 225, 407, 436, 610
Alw21I	GWGCWC	1 cut(s)	227
Alw26I	GTCTC	2 cut(s)	609, 652
Aor51HI	AGCGCT	1 cut(s)	192
ApeKI	GCWGC	4 cut(s)	85, 193, 568, 610
ApoI	RAATTY	1 cut(s)	253
AsiGI	ACCGGT	1 cut(s)	450
Asp700I	GAANNNNTTC	2 cut(s)	461, 523
AspLEI	GCGC	1 cut(s)	193
AspS9I	GGNCC	2 cut(s)	118, 183
AsuHPI	GGTGA	4 cut(s)	71, 262, 361, 442
AvaII	GGWCC	2 cut(s)	118, 183
BanII	GRGCYC	1 cut(s)	227
BbrPI	CACGTG	1 cut(s)	115
Bbv12I	GWGCWC	1 cut(s)	227
BbvCI	CCTCAGC	1 cut(s)	408
BbvI	GCAGC	4 cut(s)	72, 180, 555, 597
BccI	CCATC	5 cut(s)	64, 206, 463, 634, 670
BceAI	ACGGC	3 cut(s)	24, 183, 619
BciT130I	CCWGG	1 cut(s)	282
BclI	TGATCA	1 cut(s)	351
BcoDI	GTCTC	2 cut(s)	609, 652
BfaI	CTAG	1 cut(s)	596
BfoI	RGCGCY	1 cut(s)	194
BisI	GCNGC	4 cut(s)	86, 194, 569, 611
BlsI	GCNGC	4 cut(s)	87, 195, 570, 612
Bme1390I	CCNGG	1 cut(s)	282
Bme18I	GGWCC	2 cut(s)	118, 183
BmgBI	CACGTC	1 cut(s)	445
BmgT120I	GGNCC	2 cut(s)	118, 183
BmiI	GGNNCC	2 cut(s)	76, 184
BmrFI	CCNGG	1 cut(s)	282
BmsI	GCATC	3 cut(s)	380, 551, 608
BplI	GAGNNNNNCTC	2 cut(s)	209, 241
Bpu10I	CCTNAGC	1 cut(s)	408
BpuEI	CTTGAG	1 cut(s)	128
BsaAI	YACGTR	1 cut(s)	115
BsaI	GGTCTC	1 cut(s)	652
BsaJI	CCNNGG	1 cut(s)	281
BsaWI	WCCGGW	4 cut(s)	56, 120, 343, 450
Bse118I	RCCGGY	2 cut(s)	427, 450
BseBI	CCWGG	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	281
BseGI	GGATG	5 cut(s)	109, 152, 217, 291, 369
BseMII	CTCAG	3 cut(s)	37, 399, 620
BseRI	GAGGAG	2 cut(s)	489, 492
BseXI	GCAGC	4 cut(s)	72, 180, 555, 597
BshTI	ACCGGT	1 cut(s)	450
BsiHKAI	GWGCWC	1 cut(s)	227
BsiSI	CCGG	6 cut(s)	57, 78, 121, 344, 428, 451
BslFI	GGGAC	1 cut(s)	196
BsmAI	GTCTC	2 cut(s)	609, 652
BsmBI	CGTCTC	1 cut(s)	609
BsmFI	GGGAC	1 cut(s)	196
Bso31I	GGTCTC	1 cut(s)	652
Bsp1286I	GDGCHC	1 cut(s)	227
Bsp143I	GATC	2 cut(s)	49, 351
BspACI	CCGC	2 cut(s)	28, 566
BspCNI	CTCAG	3 cut(s)	36, 400, 619
BspHI	TCATGA	1 cut(s)	465
BspLI	GGNNCC	2 cut(s)	76, 184
BspQI	GCTCTTC	1 cut(s)	215
BspTNI	GGTCTC	1 cut(s)	652
BsrFI	RCCGGY	2 cut(s)	427, 450
BssAI	RCCGGY	2 cut(s)	427, 450
BssECI	CCNNGG	1 cut(s)	281
BssMI	GATC	2 cut(s)	49, 351
Bst2UI	CCWGG	1 cut(s)	282
Bst4CI	ACNGT	2 cut(s)	179, 582
Bst6I	CTCTTC	2 cut(s)	215, 492
BstBAI	YACGTR	1 cut(s)	115
BstC8I	GCNNGC	4 cut(s)	13, 83, 140, 589
BstDEI	CTNAG	4 cut(s)	23, 394, 408, 606
BstF5I	GGATG	5 cut(s)	109, 152, 217, 291, 369
BstH2I	RGCGCY	1 cut(s)	194
BstHHI	GCGC	1 cut(s)	193
BstKTI	GATC	2 cut(s)	52, 354
BstMAI	GTCTC	2 cut(s)	609, 652
BstMBI	GATC	2 cut(s)	49, 351
BstMWI	GCNNNNNNNGC	3 cut(s)	433, 574, 631
BstNI	CCWGG	1 cut(s)	282
BstNSI	RCATGY	1 cut(s)	92
BstSCI	CCNGG	1 cut(s)	280
BstV1I	GCAGC	4 cut(s)	72, 180, 555, 597
BtgZI	GCGATG	1 cut(s)	615
BtrI	CACGTC	1 cut(s)	445
BtsCI	GGATG	5 cut(s)	109, 152, 217, 291, 369
BtsIMutI	CAGTG	1 cut(s)	184
Cac8I	GCNNGC	4 cut(s)	13, 83, 140, 589
CciI	TCATGA	1 cut(s)	465
CfoI	GCGC	1 cut(s)	193
Cfr10I	RCCGGY	2 cut(s)	427, 450
Cfr13I	GGNCC	2 cut(s)	118, 183
CspAI	ACCGGT	1 cut(s)	450
CviAII	CATG	5 cut(s)	89, 244, 355, 466, 642
DdeI	CTNAG	4 cut(s)	23, 394, 408, 606
DpnI	GATC	2 cut(s)	51, 353
DpnII	GATC	2 cut(s)	49, 351
DrdI	GACNNNNNNGTC	1 cut(s)	125
DseDI	GACNNNNNNGTC	1 cut(s)	125
Eam1104I	CTCTTC	2 cut(s)	215, 492
EarI	CTCTTC	2 cut(s)	215, 492
EciI	GGCGGA	1 cut(s)	43
Ecl136II	GAGCTC	1 cut(s)	225
Eco24I	GRGCYC	1 cut(s)	227
Eco31I	GGTCTC	1 cut(s)	652
Eco32I	GATATC	1 cut(s)	150
Eco47I	GGWCC	2 cut(s)	118, 183
Eco47III	AGCGCT	1 cut(s)	192
Eco53kI	GAGCTC	1 cut(s)	225
Eco57I	CTGAAG	1 cut(s)	516
Eco72I	CACGTG	1 cut(s)	115
EcoICRI	GAGCTC	1 cut(s)	225
EcoRII	CCWGG	1 cut(s)	280
EcoRV	GATATC	1 cut(s)	150
EcoT22I	ATGCAT	1 cut(s)	544
EcoT38I	GRGCYC	1 cut(s)	227
Esp3I	CGTCTC	1 cut(s)	609
FaeI	CATG	5 cut(s)	92, 247, 358, 469, 645
FaiI	YATR	9 cut(s)	90, 245, 263, 297, 356, 417, 419, 467, 643
FaqI	GGGAC	1 cut(s)	196
FatI	CATG	5 cut(s)	88, 243, 354, 465, 641
FbaI	TGATCA	1 cut(s)	351
Fnu4HI	GCNGC	4 cut(s)	86, 194, 569, 611
FokI	GGATG	5 cut(s)	116, 139, 224, 298, 356
FriOI	GRGCYC	1 cut(s)	227
Fsp4HI	GCNGC	4 cut(s)	86, 194, 569, 611
FspBI	CTAG	1 cut(s)	596
GlaI	GCGC	1 cut(s)	192
GluI	GCNGC	4 cut(s)	86, 194, 569, 611
HaeII	RGCGCY	1 cut(s)	194
HapII	CCGG	6 cut(s)	57, 78, 121, 344, 428, 451
HhaI	GCGC	1 cut(s)	193
Hin1II	CATG	5 cut(s)	92, 247, 358, 469, 645
Hin6I	GCGC	1 cut(s)	191
HinP1I	GCGC	1 cut(s)	191
HincII	GTYRAC	2 cut(s)	175, 532
HindII	GTYRAC	2 cut(s)	175, 532
HindIII	AAGCTT	1 cut(s)	434
HinfI	GANTC	5 cut(s)	19, 31, 62, 320, 376
HpaII	CCGG	6 cut(s)	57, 78, 121, 344, 428, 451
HphI	GGTGA	4 cut(s)	71, 262, 361, 442
Hpy166II	GTNNAC	4 cut(s)	118, 175, 448, 532
Hpy188I	TCNGA	3 cut(s)	36, 364, 442
Hpy188III	TCNNGA	4 cut(s)	145, 335, 373, 466
Hpy8I	GTNNAC	4 cut(s)	118, 175, 448, 532
Hpy99I	CGWCG	2 cut(s)	10, 446
HpyAV	CCTTC	3 cut(s)	118, 241, 395
HpyCH4III	ACNGT	2 cut(s)	179, 582
HpyCH4IV	ACGT	2 cut(s)	114, 444
HpyCH4V	TGCA	6 cut(s)	88, 159, 196, 542, 591, 670
HpyF10VI	GCNNNNNNNGC	3 cut(s)	433, 574, 631
HpyF3I	CTNAG	4 cut(s)	23, 394, 408, 606
HpySE526I	ACGT	2 cut(s)	114, 444
Hsp92II	CATG	5 cut(s)	92, 247, 358, 469, 645
HspAI	GCGC	1 cut(s)	191
Ksp22I	TGATCA	1 cut(s)	351
Kzo9I	GATC	2 cut(s)	49, 351
LguI	GCTCTTC	1 cut(s)	215
LmnI	GCTCC	1 cut(s)	404
Lsp1109I	GCAGC	4 cut(s)	72, 180, 555, 597
LweI	GCATC	3 cut(s)	380, 551, 608
MaeI	CTAG	1 cut(s)	596
MaeII	ACGT	2 cut(s)	114, 444
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	2 cut(s)	51, 353
MboI	GATC	2 cut(s)	49, 351
MboII	GAAGA	2 cut(s)	232, 509
MhlI	GDGCHC	1 cut(s)	227
MluCI	AATT	2 cut(s)	253, 381
MlyI	GAGTC	1 cut(s)	370
MmeI	TCCRAC	1 cut(s)	465
MnlI	CCTC	5 cut(s)	391, 403, 467, 470, 565
Mph1103I	ATGCAT	1 cut(s)	544
MroXI	GAANNNNTTC	2 cut(s)	461, 523
MseI	TTAA	1 cut(s)	257
MslI	CAYNNNNRTG	1 cut(s)	248
MspA1I	CMGCKG	2 cut(s)	568, 610
MspI	CCGG	6 cut(s)	57, 78, 121, 344, 428, 451
MspR9I	CCNGG	1 cut(s)	282
MvaI	CCWGG	1 cut(s)	282
MwoI	GCNNNNNNNGC	3 cut(s)	433, 574, 631
NdeII	GATC	2 cut(s)	49, 351
NlaIII	CATG	5 cut(s)	92, 247, 358, 469, 645
NlaIV	GGNNCC	2 cut(s)	76, 184
NmuCI	GTSAC	1 cut(s)	163
NsiI	ATGCAT	1 cut(s)	544
NspI	RCATGY	1 cut(s)	92
PagI	TCATGA	1 cut(s)	465
PciSI	GCTCTTC	1 cut(s)	215
PdmI	GAANNNNTTC	2 cut(s)	461, 523
PfeI	GAWTC	4 cut(s)	19, 31, 62, 320
PinAI	ACCGGT	1 cut(s)	450
PkrI	GCNGC	4 cut(s)	87, 195, 570, 612
PleI	GAGTC	1 cut(s)	370
PmaCI	CACGTG	1 cut(s)	115
PmlI	CACGTG	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	370
Ppu21I	YACGTR	1 cut(s)	115
Psp124BI	GAGCTC	1 cut(s)	227
Psp6I	CCWGG	1 cut(s)	280
PspCI	CACGTG	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	280
PspN4I	GGNNCC	2 cut(s)	76, 184
PspPI	GGNCC	2 cut(s)	118, 183
PvuII	CAGCTG	1 cut(s)	610
RseI	CAYNNNNRTG	1 cut(s)	248
SacI	GAGCTC	1 cut(s)	227
SapI	GCTCTTC	1 cut(s)	215
SaqAI	TTAA	1 cut(s)	257
SatI	GCNGC	4 cut(s)	86, 194, 569, 611
Sau3AI	GATC	2 cut(s)	49, 351
Sau96I	GGNCC	2 cut(s)	118, 183
SchI	GAGTC	1 cut(s)	370
ScrFI	CCNGG	1 cut(s)	282
SduI	GDGCHC	1 cut(s)	227
SfaNI	GCATC	3 cut(s)	380, 551, 608
SinI	GGWCC	2 cut(s)	118, 183
SmiMI	CAYNNNNRTG	1 cut(s)	248
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	2 cut(s)	253, 381
SsiI	CCGC	2 cut(s)	28, 566
SspMI	CTAG	1 cut(s)	596
SstI	GAGCTC	1 cut(s)	227
StyD4I	CCNGG	1 cut(s)	280
TaaI	ACNGT	2 cut(s)	179, 582
TaiI	ACGT	2 cut(s)	117, 447
TaqI	TCGA	1 cut(s)	334
TaqII	GACCGA	2 cut(s)	53, 676
TasI	AATT	2 cut(s)	253, 381
TfiI	GAWTC	4 cut(s)	19, 31, 62, 320
Tru1I	TTAA	1 cut(s)	257
Tru9I	TTAA	1 cut(s)	257
TscAI	CASTG	1 cut(s)	184
TseFI	GTSAC	1 cut(s)	163
TseI	GCWGC	4 cut(s)	85, 193, 568, 610
Tsp45I	GTSAC	1 cut(s)	163
TspDTI	ATGAA	4 cut(s)	260, 312, 454, 636
TspGWI	ACGGA	1 cut(s)	281
TspRI	CASTG	1 cut(s)	184
VpaK11BI	GGWCC	2 cut(s)	118, 183
XapI	RAATTY	1 cut(s)	253
XceI	RCATGY	1 cut(s)	92
XmnI	GAANNNNTTC	2 cut(s)	461, 523
XspI	CTAG	1 cut(s)	596
Zsp2I	ATGCAT	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.