Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012837

Physical Location & Seq

Genomic Coordinates Reverse (-)

25252007 .. 25254318

Gene Structure 2312 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G62920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCTGAAGTTATGCTACCGAGGAAGATGGAGATTCTCAACCATTCTTCAAAGTTTGGATCACCGGATCCTCTTCATGTTCTTGCCGTCGACGACAGTCACGTTGATCGTAAATTCATCGAGCGTTTGCTCAGAGTATCTTCTTGCAAAGTTACTGTTGTTGATAGTGCAACAAGAGCTCTCCAATACCTTGGTTTGGATGTTGAGGAAAAATCAGTCGGTTTTGAGGATTTGAAGGTTAATTTAATTATGACTGATTACTCAATGCCCGGTATGACTGGATATGAACTCTTGAAGAAGATCAAAGAATCCTCAGCTTTTAGAGAAGTACCGGTGGTAATTATGTCCTCCGAGAACATTTTGCCTCGTATTGATAGATGTCTTGAAGAAGGGGCTGAAGATTTCTTACTGAAGCCGGTAAAACTCTCGGATGTAAAAAGATTAAGAGATTCTCTAATGAAGGTTGAAGATTTGTCTTTCACAAAGAGTATTCAGAAGAGAGAGCTAGAAACAGAGAATGTCTACCCTGTTCACTCGCAGCTCAAACGCGCAAAGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010114 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:0098727 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

186

Amino Acids

21.24

Weight (kDa)

6.45

Isoelectric Point (pI)

49.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	27 - 145	2.1e-20	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0012837)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48100 AT5G62920
fragaria_vesca	FvH4_5g16240
malus_domestica	MD06G1182400.v1.1 MD14G1188400.v1.1
prunus_persica	Prupe.5G180500_v2.0.a1 Prupe.5G180500_v2.0.a1
pyrus_communis	pycom06g16130 pycom14g15610
rosa_chinensis	RchiOBHm_Chr7g0179851
rosa_laevigata	RLG00000005318
rosa_roxburghii	Rroxscaffold_3G00273400
rosa_rugosa	Rorug06G0428800
rosa_samantha	Rh7AG028600 Rh7BG027800 Rh7CG029500 Rh7DG028900
rosa_wichuraiana	Rw7G002290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	90, 522
AccII	CGCG	1 cut(s)	549
AclWI	GGATC	3 cut(s)	62, 67, 75
AcsI	RAATTY	1 cut(s)	113
AcuI	CTGAAG	3 cut(s)	27, 417, 431
AfaI	GTAC	1 cut(s)	330
AfiI	CCNNNNNNNGG	1 cut(s)	196
AgeI	ACCGGT	1 cut(s)	331
AgsI	TTSAA	5 cut(s)	51, 235, 295, 386, 467
AluBI	AGCT	4 cut(s)	179, 317, 505, 541
AluI	AGCT	4 cut(s)	179, 317, 505, 541
Alw21I	GWGCWC	1 cut(s)	181
AlwI	GGATC	3 cut(s)	62, 67, 75
ApeKI	GCWGC	1 cut(s)	538
ApoI	RAATTY	1 cut(s)	113
AsiGI	ACCGGT	1 cut(s)	331
AspLEI	GCGC	1 cut(s)	551
AsuC2I	CCSGG	1 cut(s)	270
AsuHPI	GGTGA	1 cut(s)	54
BamHI	GGATCC	1 cut(s)	67
BanII	GRGCYC	1 cut(s)	181
BarI	GAAGNNNNNNTAC	3 cut(s)	32, 390, 422
Bbv12I	GWGCWC	1 cut(s)	181
BbvCI	CCTCAGC	1 cut(s)	313
BbvI	GCAGC	1 cut(s)	550
BccI	CCATC	1 cut(s)	22
BceAI	ACGGC	1 cut(s)	71
BcnI	CCSGG	1 cut(s)	270
BfaI	CTAG	1 cut(s)	506
BglII	AGATCT	1 cut(s)	555
BisI	GCNGC	1 cut(s)	539
BlsI	GCNGC	1 cut(s)	540
Bme1390I	CCNGG	1 cut(s)	270
BmiI	GGNNCC	1 cut(s)	69
BmrFI	CCNGG	1 cut(s)	270
BoxI	GACNNNNGTC	1 cut(s)	96
Bpu10I	CCTNAGC	1 cut(s)	313
BpuMI	CCSGG	1 cut(s)	270
BsaJI	CCNNGG	2 cut(s)	20, 190
BsaWI	WCCGGW	2 cut(s)	64, 331
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
Bse118I	RCCGGY	2 cut(s)	331, 415
Bse1I	ACTGG	1 cut(s)	283
BseDI	CCNNGG	2 cut(s)	20, 190
BseGI	GGATG	2 cut(s)	205, 436
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseMII	CTCAG	2 cut(s)	145, 327
BseNI	ACTGG	1 cut(s)	283
BseXI	GCAGC	1 cut(s)	550
Bsh1236I	CGCG	1 cut(s)	549
BshTI	ACCGGT	1 cut(s)	331
BsiHKAI	GWGCWC	1 cut(s)	181
BsiSI	CCGG	4 cut(s)	65, 270, 332, 416
BslI	CCNNNNNNNGG	1 cut(s)	196
Bsp1286I	GDGCHC	1 cut(s)	181
Bsp143I	GATC	5 cut(s)	59, 67, 106, 300, 555
BspCNI	CTCAG	2 cut(s)	144, 326
BspFNI	CGCG	1 cut(s)	549
BspLI	GGNNCC	1 cut(s)	69
BspPI	GGATC	3 cut(s)	62, 67, 75
BsrFI	RCCGGY	2 cut(s)	331, 415
BsrI	ACTGG	1 cut(s)	283
BssAI	RCCGGY	2 cut(s)	331, 415
BssECI	CCNNGG	2 cut(s)	20, 190
BssMI	GATC	5 cut(s)	59, 67, 106, 300, 555
BssT1I	CCWWGG	1 cut(s)	190
Bst4CI	ACNGT	2 cut(s)	98, 157
Bst6I	CTCTTC	2 cut(s)	78, 491
BstDEI	CTNAG	2 cut(s)	131, 313
BstF5I	GGATG	2 cut(s)	205, 436
BstFNI	CGCG	1 cut(s)	549
BstHHI	GCGC	1 cut(s)	551
BstKTI	GATC	5 cut(s)	62, 70, 109, 303, 558
BstMBI	GATC	5 cut(s)	59, 67, 106, 300, 555
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstPAI	GACNNNNGTC	1 cut(s)	96
BstSCI	CCNGG	1 cut(s)	268
BstUI	CGCG	1 cut(s)	549
BstV1I	GCAGC	1 cut(s)	550
BstX2I	RGATCY	2 cut(s)	67, 555
BstXI	CCANNNNNNTGG	1 cut(s)	191
BstYI	RGATCY	2 cut(s)	67, 555
BtsCI	GGATG	2 cut(s)	205, 436
CfoI	GCGC	1 cut(s)	551
Cfr10I	RCCGGY	2 cut(s)	331, 415
Csp6I	GTAC	1 cut(s)	329
CspAI	ACCGGT	1 cut(s)	331
CviAII	CATG	1 cut(s)	77
CviJI	RGCY	7 cut(s)	5, 179, 317, 395, 415, 505, 541
CviKI_1	RGCY	7 cut(s)	5, 179, 317, 395, 415, 505, 541
CviQI	GTAC	1 cut(s)	329
DdeI	CTNAG	2 cut(s)	131, 313
DpnI	GATC	5 cut(s)	61, 69, 108, 302, 557
DpnII	GATC	5 cut(s)	59, 67, 106, 300, 555
Eam1104I	CTCTTC	2 cut(s)	78, 491
EarI	CTCTTC	2 cut(s)	78, 491
Ecl136II	GAGCTC	1 cut(s)	179
Eco130I	CCWWGG	1 cut(s)	190
Eco24I	GRGCYC	1 cut(s)	181
Eco53kI	GAGCTC	1 cut(s)	179
Eco57I	CTGAAG	3 cut(s)	27, 417, 431
EcoICRI	GAGCTC	1 cut(s)	179
EcoT14I	CCWWGG	1 cut(s)	190
EcoT38I	GRGCYC	1 cut(s)	181
ErhI	CCWWGG	1 cut(s)	190
FaeI	CATG	1 cut(s)	80
FaiI	YATR	6 cut(s)	14, 78, 251, 275, 285, 344
FatI	CATG	1 cut(s)	76
FblI	GTMKAC	2 cut(s)	90, 522
Fnu4HI	GCNGC	1 cut(s)	539
FokI	GGATG	2 cut(s)	212, 443
FriOI	GRGCYC	1 cut(s)	181
Fsp4HI	GCNGC	1 cut(s)	539
FspBI	CTAG	1 cut(s)	506
GlaI	GCGC	1 cut(s)	550
GluI	GCNGC	1 cut(s)	539
HapII	CCGG	4 cut(s)	65, 270, 332, 416
HhaI	GCGC	1 cut(s)	551
Hin1II	CATG	1 cut(s)	80
Hin6I	GCGC	1 cut(s)	549
HinP1I	GCGC	1 cut(s)	549
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	3 cut(s)	34, 308, 449
HpaII	CCGG	4 cut(s)	65, 270, 332, 416
HphI	GGTGA	1 cut(s)	54
Hpy166II	GTNNAC	3 cut(s)	91, 523, 532
Hpy188I	TCNGA	5 cut(s)	134, 352, 430, 495, 560
Hpy188III	TCNNGA	2 cut(s)	292, 383
Hpy8I	GTNNAC	3 cut(s)	91, 523, 532
Hpy99I	CGWCG	2 cut(s)	92, 95
HpyAV	CCTTC	3 cut(s)	229, 383, 454
HpyCH4III	ACNGT	2 cut(s)	98, 157
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	2 cut(s)	147, 170
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
HpyF3I	CTNAG	2 cut(s)	131, 313
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	1 cut(s)	80
HspAI	GCGC	1 cut(s)	549
Kzo9I	GATC	5 cut(s)	59, 67, 106, 300, 555
LpnPI	CCDG	6 cut(s)	78, 264, 283, 345, 429, 540
Lsp1109I	GCAGC	1 cut(s)	550
MaeI	CTAG	1 cut(s)	506
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	2 cut(s)	98, 151
MalI	GATC	5 cut(s)	61, 69, 108, 302, 557
MboI	GATC	5 cut(s)	59, 67, 106, 300, 555
MflI	RGATCY	2 cut(s)	67, 555
MhlI	GDGCHC	1 cut(s)	181
MluCI	AATT	4 cut(s)	113, 241, 246, 339
MnlI	CCTC	7 cut(s)	15, 81, 199, 220, 322, 358, 375
MseI	TTAA	3 cut(s)	240, 245, 443
MspI	CCGG	4 cut(s)	65, 270, 332, 416
MspR9I	CCNGG	1 cut(s)	270
MvnI	CGCG	1 cut(s)	549
MwoI	GCNNNNNNNGC	1 cut(s)	176
NciI	CCSGG	1 cut(s)	270
NdeII	GATC	5 cut(s)	59, 67, 106, 300, 555
NlaIII	CATG	1 cut(s)	80
NlaIV	GGNNCC	1 cut(s)	69
NmuCI	GTSAC	1 cut(s)	98
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PfeI	GAWTC	3 cut(s)	34, 308, 449
PinAI	ACCGGT	1 cut(s)	331
PkrI	GCNGC	1 cut(s)	540
PshAI	GACNNNNGTC	1 cut(s)	96
Psp124BI	GAGCTC	1 cut(s)	181
PspN4I	GGNNCC	1 cut(s)	69
PsuI	RGATCY	2 cut(s)	67, 555
RsaI	GTAC	1 cut(s)	330
RsaNI	GTAC	1 cut(s)	329
SacI	GAGCTC	1 cut(s)	181
SalI	GTCGAC	1 cut(s)	89
SaqAI	TTAA	3 cut(s)	240, 245, 443
SatI	GCNGC	1 cut(s)	539
Sau3AI	GATC	5 cut(s)	59, 67, 106, 300, 555
ScrFI	CCNGG	1 cut(s)	270
SduI	GDGCHC	1 cut(s)	181
SetI	ASST	8 cut(s)	105, 181, 192, 240, 319, 465, 507, 543
SgrDI	CGTCGACG	1 cut(s)	89
Sse9I	AATT	4 cut(s)	113, 241, 246, 339
SspMI	CTAG	1 cut(s)	506
SstI	GAGCTC	1 cut(s)	181
StyD4I	CCNGG	1 cut(s)	268
StyI	CCWWGG	1 cut(s)	190
TaaI	ACNGT	2 cut(s)	98, 157
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	2 cut(s)	90, 120
TasI	AATT	4 cut(s)	113, 241, 246, 339
TfiI	GAWTC	3 cut(s)	34, 308, 449
Tru1I	TTAA	3 cut(s)	240, 245, 443
Tru9I	TTAA	3 cut(s)	240, 245, 443
TseFI	GTSAC	1 cut(s)	98
TseI	GCWGC	1 cut(s)	538
Tsp45I	GTSAC	1 cut(s)	98
TspDTI	ATGAA	4 cut(s)	65, 106, 300, 473
XapI	RAATTY	1 cut(s)	113
XmiI	GTMKAC	2 cut(s)	90, 522
XspI	CTAG	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.