two-component response regulator
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G48100 AT5G62920 |
| fragaria_vesca | FvH4_5g16240 |
| malus_domestica | MD06G1182400.v1.1 MD14G1188400.v1.1 |
| prunus_persica | Prupe.5G180500_v2.0.a1 Prupe.5G180500_v2.0.a1 |
| pyrus_communis | pycom06g16130 pycom14g15610 |
| rosa_chinensis | RchiOBHm_Chr7g0179851 |
| rosa_laevigata | RLG00000005318 |
| rosa_roxburghii | Rroxscaffold_3G00273400 |
| rosa_rugosa | Rorug06G0428800 |
| rosa_samantha | Rh7AG028600 Rh7BG027800 Rh7CG029500 Rh7DG028900 |
| rosa_wichuraiana | Rw7G002290 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 125 |
| AccI | GTMKAC | 1 cut(s) | 117 |
| AciI | CCGC | 2 cut(s) | 180, 566 |
| AcoI | YGGCCR | 1 cut(s) | 9 |
| AcuI | CTGAAG | 1 cut(s) | 309 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 642 |
| AgsI | TTSAA | 3 cut(s) | 424, 457, 527 |
| AjiI | CACGTC | 1 cut(s) | 115 |
| AjnI | CCWGG | 1 cut(s) | 280 |
| AluBI | AGCT | 7 cut(s) | 52, 85, 191, 329, 407, 436, 610 |
| AluI | AGCT | 7 cut(s) | 52, 85, 191, 329, 407, 436, 610 |
| Alw21I | GWGCWC | 1 cut(s) | 193 |
| Alw26I | GTCTC | 2 cut(s) | 579, 652 |
| AoxI | GGCC | 2 cut(s) | 9, 26 |
| ApeKI | GCWGC | 1 cut(s) | 85 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 631, 663 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 461 |
| AsuHPI | GGTGA | 3 cut(s) | 262, 361, 540 |
| BalI | TGGCCA | 1 cut(s) | 11 |
| BanII | GRGCYC | 1 cut(s) | 193 |
| BbsI | GAAGAC | 1 cut(s) | 609 |
| Bbv12I | GWGCWC | 1 cut(s) | 193 |
| BbvCI | CCTCAGC | 1 cut(s) | 408 |
| BbvI | GCAGC | 1 cut(s) | 72 |
| BccI | CCATC | 4 cut(s) | 64, 206, 463, 634 |
| BceAI | ACGGC | 2 cut(s) | 83, 183 |
| BciT130I | CCWGG | 1 cut(s) | 282 |
| BclI | TGATCA | 1 cut(s) | 351 |
| BcoDI | GTCTC | 2 cut(s) | 579, 652 |
| BfaI | CTAG | 3 cut(s) | 203, 596, 663 |
| BfmI | CTRYAG | 1 cut(s) | 194 |
| BisI | GCNGC | 1 cut(s) | 86 |
| BlsI | GCNGC | 1 cut(s) | 87 |
| Bme1390I | CCNGG | 1 cut(s) | 282 |
| BmgBI | CACGTC | 1 cut(s) | 115 |
| BmrFI | CCNGG | 1 cut(s) | 282 |
| BmsI | GCATC | 3 cut(s) | 229, 551, 608 |
| BpiI | GAAGAC | 1 cut(s) | 609 |
| Bpu10I | CCTNAGC | 1 cut(s) | 408 |
| BsaI | GGTCTC | 1 cut(s) | 652 |
| BsaJI | CCNNGG | 2 cut(s) | 99, 281 |
| BsaWI | WCCGGW | 2 cut(s) | 120, 343 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 642 |
| Bse1I | ACTGG | 2 cut(s) | 12, 428 |
| Bse3DI | GCAATG | 1 cut(s) | 629 |
| BseBI | CCWGG | 1 cut(s) | 282 |
| BseDI | CCNNGG | 2 cut(s) | 99, 281 |
| BseGI | GGATG | 4 cut(s) | 109, 217, 291, 369 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 642 |
| BseMI | GCAATG | 1 cut(s) | 629 |
| BseMII | CTCAG | 3 cut(s) | 80, 399, 620 |
| BseNI | ACTGG | 2 cut(s) | 12, 428 |
| BseRI | GAGGAG | 3 cut(s) | 425, 489, 492 |
| BseXI | GCAGC | 1 cut(s) | 72 |
| BsgI | GTGCAG | 1 cut(s) | 516 |
| Bsh1285I | CGRYCG | 1 cut(s) | 121 |
| BshFI | GGCC | 2 cut(s) | 11, 28 |
| BsiEI | CGRYCG | 1 cut(s) | 121 |
| BsiHKAI | GWGCWC | 1 cut(s) | 193 |
| BsiSI | CCGG | 2 cut(s) | 121, 344 |
| BslFI | GGGAC | 1 cut(s) | 196 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 642 |
| BsmAI | GTCTC | 2 cut(s) | 579, 652 |
| BsmFI | GGGAC | 1 cut(s) | 196 |
| BsnI | GGCC | 2 cut(s) | 11, 28 |
| Bso31I | GGTCTC | 1 cut(s) | 652 |
| Bsp1286I | GDGCHC | 1 cut(s) | 193 |
| Bsp143I | GATC | 2 cut(s) | 312, 351 |
| BspACI | CCGC | 2 cut(s) | 180, 566 |
| BspANI | GGCC | 2 cut(s) | 11, 28 |
| BspCNI | CTCAG | 3 cut(s) | 79, 400, 619 |
| BspHI | TCATGA | 1 cut(s) | 465 |
| BspMAI | CTGCAG | 1 cut(s) | 198 |
| BspTNI | GGTCTC | 1 cut(s) | 652 |
| BsrDI | GCAATG | 1 cut(s) | 629 |
| BsrI | ACTGG | 2 cut(s) | 12, 428 |
| BssECI | CCNNGG | 2 cut(s) | 99, 281 |
| BssMI | GATC | 2 cut(s) | 312, 351 |
| Bst2UI | CCWGG | 1 cut(s) | 282 |
| Bst4CI | ACNGT | 4 cut(s) | 452, 573, 615, 645 |
| Bst6I | CTCTTC | 2 cut(s) | 215, 481 |
| BstC8I | GCNNGC | 1 cut(s) | 589 |
| BstDEI | CTNAG | 3 cut(s) | 66, 408, 606 |
| BstDSI | CCRYGG | 1 cut(s) | 99 |
| BstF5I | GGATG | 4 cut(s) | 109, 217, 291, 369 |
| BstKTI | GATC | 2 cut(s) | 315, 354 |
| BstMAI | GTCTC | 2 cut(s) | 579, 652 |
| BstMBI | GATC | 2 cut(s) | 312, 351 |
| BstMCI | CGRYCG | 1 cut(s) | 121 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 34, 433, 631 |
| BstNI | CCWGG | 1 cut(s) | 282 |
| BstNSI | RCATGY | 1 cut(s) | 92 |
| BstSCI | CCNGG | 1 cut(s) | 280 |
| BstSFI | CTRYAG | 1 cut(s) | 194 |
| BstV1I | GCAGC | 1 cut(s) | 72 |
| BstV2I | GAAGAC | 1 cut(s) | 609 |
| BsuRI | GGCC | 2 cut(s) | 11, 28 |
| BtgI | CCRYGG | 1 cut(s) | 99 |
| BtgZI | GCGATG | 2 cut(s) | 20, 606 |
| BtrI | CACGTC | 1 cut(s) | 115 |
| BtsCI | GGATG | 4 cut(s) | 109, 217, 291, 369 |
| BtsIMutI | CAGTG | 1 cut(s) | 19 |
| Cac8I | GCNNGC | 1 cut(s) | 589 |
| CciI | TCATGA | 1 cut(s) | 465 |
| CviAII | CATG | 3 cut(s) | 89, 355, 466 |
| DdeI | CTNAG | 3 cut(s) | 66, 408, 606 |
| DpnI | GATC | 2 cut(s) | 314, 353 |
| DpnII | GATC | 2 cut(s) | 312, 351 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 125 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 125 |
| EaeI | YGGCCR | 1 cut(s) | 9 |
| Eam1104I | CTCTTC | 2 cut(s) | 215, 481 |
| EarI | CTCTTC | 2 cut(s) | 215, 481 |
| Ecl136II | GAGCTC | 1 cut(s) | 191 |
| Eco147I | AGGCCT | 1 cut(s) | 28 |
| Eco24I | GRGCYC | 1 cut(s) | 193 |
| Eco31I | GGTCTC | 1 cut(s) | 652 |
| Eco32I | GATATC | 1 cut(s) | 150 |
| Eco53kI | GAGCTC | 1 cut(s) | 191 |
| Eco57I | CTGAAG | 1 cut(s) | 309 |
| EcoICRI | GAGCTC | 1 cut(s) | 191 |
| EcoRII | CCWGG | 1 cut(s) | 280 |
| EcoRV | GATATC | 1 cut(s) | 150 |
| EcoT22I | ATGCAT | 1 cut(s) | 544 |
| EcoT38I | GRGCYC | 1 cut(s) | 193 |
| FaeI | CATG | 3 cut(s) | 92, 358, 469 |
| FaiI | YATR | 7 cut(s) | 90, 245, 297, 356, 417, 419, 467 |
| FaqI | GGGAC | 1 cut(s) | 196 |
| FatI | CATG | 3 cut(s) | 88, 354, 465 |
| FauI | CCCGC | 1 cut(s) | 173 |
| FbaI | TGATCA | 1 cut(s) | 351 |
| FblI | GTMKAC | 1 cut(s) | 117 |
| Fnu4HI | GCNGC | 1 cut(s) | 86 |
| FokI | GGATG | 4 cut(s) | 116, 224, 298, 356 |
| FriOI | GRGCYC | 1 cut(s) | 193 |
| Fsp4HI | GCNGC | 1 cut(s) | 86 |
| FspBI | CTAG | 3 cut(s) | 203, 596, 663 |
| GluI | GCNGC | 1 cut(s) | 86 |
| HaeIII | GGCC | 2 cut(s) | 11, 28 |
| HapII | CCGG | 2 cut(s) | 121, 344 |
| Hin1II | CATG | 3 cut(s) | 92, 358, 469 |
| HincII | GTYRAC | 3 cut(s) | 118, 175, 532 |
| HindII | GTYRAC | 3 cut(s) | 118, 175, 532 |
| HindIII | AAGCTT | 1 cut(s) | 434 |
| HinfI | GANTC | 4 cut(s) | 62, 253, 320, 508 |
| HpaII | CCGG | 2 cut(s) | 121, 344 |
| HphI | GGTGA | 3 cut(s) | 262, 361, 540 |
| Hpy166II | GTNNAC | 4 cut(s) | 118, 175, 448, 532 |
| Hpy188I | TCNGA | 3 cut(s) | 69, 364, 442 |
| Hpy188III | TCNNGA | 2 cut(s) | 373, 466 |
| Hpy8I | GTNNAC | 4 cut(s) | 118, 175, 448, 532 |
| Hpy99I | CGWCG | 1 cut(s) | 119 |
| HpyAV | CCTTC | 4 cut(s) | 118, 241, 395, 588 |
| HpyCH4III | ACNGT | 4 cut(s) | 452, 573, 615, 645 |
| HpyCH4IV | ACGT | 1 cut(s) | 114 |
| HpyCH4V | TGCA | 7 cut(s) | 88, 159, 196, 497, 542, 591, 670 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 34, 433, 631 |
| HpyF3I | CTNAG | 3 cut(s) | 66, 408, 606 |
| HpySE526I | ACGT | 1 cut(s) | 114 |
| Hsp92II | CATG | 3 cut(s) | 92, 358, 469 |
| Ksp22I | TGATCA | 1 cut(s) | 351 |
| Kzo9I | GATC | 2 cut(s) | 312, 351 |
| LmnI | GCTCC | 2 cut(s) | 82, 404 |
| LpnPI | CCDG | 9 cut(s) | 10, 25, 63, 134, 267, 294, 357, 386, 441 |
| Lsp1109I | GCAGC | 1 cut(s) | 72 |
| LweI | GCATC | 3 cut(s) | 229, 551, 608 |
| MaeI | CTAG | 3 cut(s) | 203, 596, 663 |
| MaeII | ACGT | 1 cut(s) | 114 |
| MaeIII | GTNAC | 1 cut(s) | 163 |
| MalI | GATC | 2 cut(s) | 314, 353 |
| MboI | GATC | 2 cut(s) | 312, 351 |
| MboII | GAAGA | 7 cut(s) | 232, 315, 322, 498, 514, 517, 609 |
| MhlI | GDGCHC | 1 cut(s) | 193 |
| MlsI | TGGCCA | 1 cut(s) | 11 |
| MluCI | AATT | 2 cut(s) | 31, 381 |
| MluNI | TGGCCA | 1 cut(s) | 11 |
| MmeI | TCCRAC | 1 cut(s) | 211 |
| MnlI | CCTC | 8 cut(s) | 129, 391, 403, 467, 470, 561, 565, 646 |
| Mox20I | TGGCCA | 1 cut(s) | 11 |
| Mph1103I | ATGCAT | 1 cut(s) | 544 |
| MroXI | GAANNNNTTC | 1 cut(s) | 461 |
| MscI | TGGCCA | 1 cut(s) | 11 |
| Msp20I | TGGCCA | 1 cut(s) | 11 |
| MspA1I | CMGCKG | 1 cut(s) | 180 |
| MspI | CCGG | 2 cut(s) | 121, 344 |
| MspR9I | CCNGG | 1 cut(s) | 282 |
| MvaI | CCWGG | 1 cut(s) | 282 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 34, 433, 631 |
| NdeII | GATC | 2 cut(s) | 312, 351 |
| NlaIII | CATG | 3 cut(s) | 92, 358, 469 |
| NmuCI | GTSAC | 1 cut(s) | 163 |
| NsiI | ATGCAT | 1 cut(s) | 544 |
| NspI | RCATGY | 1 cut(s) | 92 |
| PagI | TCATGA | 1 cut(s) | 465 |
| PceI | AGGCCT | 1 cut(s) | 28 |
| PdmI | GAANNNNTTC | 1 cut(s) | 461 |
| PfeI | GAWTC | 4 cut(s) | 62, 253, 320, 508 |
| PkrI | GCNGC | 1 cut(s) | 87 |
| Psp124BI | GAGCTC | 1 cut(s) | 193 |
| Psp6I | CCWGG | 1 cut(s) | 280 |
| PspGI | CCWGG | 1 cut(s) | 280 |
| PstI | CTGCAG | 1 cut(s) | 198 |
| SacI | GAGCTC | 1 cut(s) | 193 |
| SalI | GTCGAC | 1 cut(s) | 116 |
| SatI | GCNGC | 1 cut(s) | 86 |
| Sau3AI | GATC | 2 cut(s) | 312, 351 |
| ScrFI | CCNGG | 1 cut(s) | 282 |
| SduI | GDGCHC | 1 cut(s) | 193 |
| SfaNI | GCATC | 3 cut(s) | 229, 551, 608 |
| SfcI | CTRYAG | 1 cut(s) | 194 |
| Sse9I | AATT | 2 cut(s) | 31, 381 |
| SseBI | AGGCCT | 1 cut(s) | 28 |
| SsiI | CCGC | 2 cut(s) | 180, 566 |
| SspMI | CTAG | 3 cut(s) | 203, 596, 663 |
| SstI | GAGCTC | 1 cut(s) | 193 |
| StuI | AGGCCT | 1 cut(s) | 28 |
| StyD4I | CCNGG | 1 cut(s) | 280 |
| TaaI | ACNGT | 4 cut(s) | 452, 573, 615, 645 |
| TaiI | ACGT | 1 cut(s) | 117 |
| TaqI | TCGA | 2 cut(s) | 117, 638 |
| TasI | AATT | 2 cut(s) | 31, 381 |
| TfiI | GAWTC | 4 cut(s) | 62, 253, 320, 508 |
| TscAI | CASTG | 1 cut(s) | 19 |
| TseFI | GTSAC | 1 cut(s) | 163 |
| TseI | GCWGC | 1 cut(s) | 85 |
| Tsp45I | GTSAC | 1 cut(s) | 163 |
| TspDTI | ATGAA | 3 cut(s) | 260, 454, 609 |
| TspRI | CASTG | 1 cut(s) | 19 |
| XceI | RCATGY | 1 cut(s) | 92 |
| XmiI | GTMKAC | 1 cut(s) | 117 |
| XmnI | GAANNNNTTC | 1 cut(s) | 461 |
| XspI | CTAG | 3 cut(s) | 203, 596, 663 |
| Zsp2I | ATGCAT | 1 cut(s) | 544 |