Rh7AG028600

two-component response regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0012837
Physical Location & Seq
Forward (+)
1912239 .. 1913500
1262 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG028600.1

Sequence Viewer

Length: 462 bp
ATGGCCACCGCCGGTGAGGTTTTAAGGAGAAATGTGCCGGAAAGTTTTGAGCTTTCTGAGAAGGAGCTTCATGTTCTGGCTGTGGATGATAGCATCATAGACAGGAAGGTCATTGAGAAGCTGCTTAAGATTTCTTGCTGTAAAGTGACTGCCGTTGAGAGTGGAACCAGGGCTCTGCAGTATCTGGGCTTGGATGGAGAGAAGAAGAGCTCAGTTGGATTTGATGGTATGAAGGTGAATCTAATAATAACAGACTACTCAATGCCTGGGATGACAGGATATGAGCTGCTAAAAAAGATCAAGGAATCATCAGCTTTTAGAGAAGTTCCAGTGGTGATCATGTCCTCAGAGAACATCCTCACTCGAATTGATAGGTATGTTCTTGGGCCAAACATGACTGTTCAATTTTTCAATGGTACTTGCTTTGTTTGTAGATCTATGTCATTAAGATCAGAACTTTGA

Protein Analysis

153

Amino Acids

17.08

Weight (kDa)

6.6

Isoelectric Point (pI)

47.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 25 - 118 1.5e-13 Response regulator receiver domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012837)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48100 AT5G62920
fragaria_vesca FvH4_5g16240
malus_domestica MD06G1182400.v1.1 MD14G1188400.v1.1
prunus_persica Prupe.5G180500_v2.0.a1 Prupe.5G180500_v2.0.a1
pyrus_communis pycom06g16130 pycom14g15610
rosa_chinensis RchiOBHm_Chr7g0179851
rosa_laevigata RLG00000005318
rosa_roxburghii Rroxscaffold_3G00273400
rosa_rugosa Rorug06G0428800
rosa_samantha Rh7AG028600 Rh7BG027800 Rh7CG029500 Rh7DG028900
rosa_wichuraiana Rw7G002290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 107
AciI CCGC 1 cut(s) 9
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 418
AflII CTTAAG 1 cut(s) 125
AgsI TTSAA 2 cut(s) 404, 412
AjnI CCWGG 2 cut(s) 167, 265
AluBI AGCT 6 cut(s) 52, 67, 121, 210, 286, 314
AluI AGCT 6 cut(s) 52, 67, 121, 210, 286, 314
Alw21I GWGCWC 1 cut(s) 212
AlwNI CAGNNNCTG 1 cut(s) 184
AoxI GGCC 2 cut(s) 3, 386
ApeKI GCWGC 2 cut(s) 121, 286
AspS9I GGNCC 1 cut(s) 386
AsuHPI GGTGA 3 cut(s) 26, 247, 346
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 2 cut(s) 175, 212
Bbv12I GWGCWC 1 cut(s) 212
BbvI GCAGC 2 cut(s) 108, 273
BccI CCATC 2 cut(s) 188, 218
BceAI ACGGC 1 cut(s) 137
BciT130I CCWGG 2 cut(s) 169, 267
BclI TGATCA 1 cut(s) 336
BfmI CTRYAG 1 cut(s) 176
BfrI CTTAAG 1 cut(s) 125
BglII AGATCT 1 cut(s) 434
BisI GCNGC 2 cut(s) 122, 287
BlsI GCNGC 2 cut(s) 123, 288
Bme1390I CCNGG 2 cut(s) 169, 267
BmgT120I GGNCC 1 cut(s) 386
BmiI GGNNCC 1 cut(s) 166
BmrFI CCNGG 2 cut(s) 169, 267
BmsI GCATC 1 cut(s) 102
BsaJI CCNNGG 2 cut(s) 168, 266
Bse118I RCCGGY 1 cut(s) 11
Bse1I ACTGG 1 cut(s) 329
BseBI CCWGG 2 cut(s) 169, 267
BseDI CCNNGG 2 cut(s) 168, 266
BseGI GGATG 4 cut(s) 91, 199, 276, 354
BseMII CTCAG 3 cut(s) 48, 225, 360
BseNI ACTGG 1 cut(s) 329
BseXI GCAGC 2 cut(s) 108, 273
BshFI GGCC 2 cut(s) 5, 388
BsiHKAI GWGCWC 1 cut(s) 212
BsiSI CCGG 2 cut(s) 12, 38
BsnI GGCC 2 cut(s) 5, 388
Bsp1286I GDGCHC 2 cut(s) 175, 212
Bsp143I GATC 4 cut(s) 297, 336, 434, 449
BspACI CCGC 1 cut(s) 9
BspANI GGCC 2 cut(s) 5, 388
BspCNI CTCAG 3 cut(s) 49, 224, 359
BspLI GGNNCC 1 cut(s) 166
BspMAI CTGCAG 1 cut(s) 180
BspQI GCTCTTC 1 cut(s) 200
BspTI CTTAAG 1 cut(s) 125
BsrFI RCCGGY 1 cut(s) 11
BsrI ACTGG 1 cut(s) 329
BssAI RCCGGY 1 cut(s) 11
BssECI CCNNGG 2 cut(s) 168, 266
BssMI GATC 4 cut(s) 297, 336, 434, 449
Bst2UI CCWGG 2 cut(s) 169, 267
Bst4CI ACNGT 1 cut(s) 400
Bst6I CTCTTC 1 cut(s) 200
BstAFI CTTAAG 1 cut(s) 125
BstDEI CTNAG 3 cut(s) 57, 211, 346
BstF5I GGATG 4 cut(s) 91, 199, 276, 354
BstKTI GATC 4 cut(s) 300, 339, 437, 452
BstMBI GATC 4 cut(s) 297, 336, 434, 449
BstNI CCWGG 2 cut(s) 169, 267
BstSCI CCNGG 2 cut(s) 167, 265
BstSFI CTRYAG 1 cut(s) 176
BstV1I GCAGC 2 cut(s) 108, 273
BstX2I RGATCY 1 cut(s) 434
BstYI RGATCY 1 cut(s) 434
BsuRI GGCC 2 cut(s) 5, 388
BtsCI GGATG 4 cut(s) 91, 199, 276, 354
BtsIMutI CAGTG 1 cut(s) 336
CaiI CAGNNNCTG 1 cut(s) 184
Cfr10I RCCGGY 1 cut(s) 11
Cfr13I GGNCC 1 cut(s) 386
Csp6I GTAC 1 cut(s) 417
CviAII CATG 3 cut(s) 71, 340, 394
CviQI GTAC 1 cut(s) 417
DdeI CTNAG 3 cut(s) 57, 211, 346
DpnI GATC 4 cut(s) 299, 338, 436, 451
DpnII GATC 4 cut(s) 297, 336, 434, 449
DrdI GACNNNNNNGTC 1 cut(s) 107
DseDI GACNNNNNNGTC 1 cut(s) 107
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 200
EarI CTCTTC 1 cut(s) 200
Ecl136II GAGCTC 1 cut(s) 210
Eco24I GRGCYC 2 cut(s) 175, 212
Eco53kI GAGCTC 1 cut(s) 210
EcoICRI GAGCTC 1 cut(s) 210
EcoRII CCWGG 2 cut(s) 167, 265
EcoT38I GRGCYC 2 cut(s) 175, 212
FaeI CATG 3 cut(s) 74, 343, 397
FaiI YATR 8 cut(s) 72, 98, 230, 282, 341, 378, 395, 440
FatI CATG 3 cut(s) 70, 339, 393
FbaI TGATCA 1 cut(s) 336
Fnu4HI GCNGC 2 cut(s) 122, 287
FokI GGATG 4 cut(s) 98, 206, 283, 341
FriOI GRGCYC 2 cut(s) 175, 212
Fsp4HI GCNGC 2 cut(s) 122, 287
GluI GCNGC 2 cut(s) 122, 287
HaeIII GGCC 2 cut(s) 5, 388
HapII CCGG 2 cut(s) 12, 38
Hin1II CATG 3 cut(s) 74, 343, 397
HinfI GANTC 2 cut(s) 238, 305
HpaII CCGG 2 cut(s) 12, 38
HphI GGTGA 3 cut(s) 26, 247, 346
Hpy188I TCNGA 3 cut(s) 58, 349, 454
HpyAV CCTTC 3 cut(s) 55, 100, 226
HpyCH4III ACNGT 1 cut(s) 400
HpyCH4V TGCA 1 cut(s) 178
HpyF3I CTNAG 3 cut(s) 57, 211, 346
Hsp92II CATG 3 cut(s) 74, 343, 397
Ksp22I TGATCA 1 cut(s) 336
Kzo9I GATC 4 cut(s) 297, 336, 434, 449
LguI GCTCTTC 1 cut(s) 200
LmnI GCTCC 1 cut(s) 64
Lsp1109I GCAGC 2 cut(s) 108, 273
LweI GCATC 1 cut(s) 102
MaeIII GTNAC 1 cut(s) 145
MalI GATC 4 cut(s) 299, 338, 436, 451
MboI GATC 4 cut(s) 297, 336, 434, 449
MboII GAAGA 2 cut(s) 214, 217
MflI RGATCY 1 cut(s) 434
MhlI GDGCHC 2 cut(s) 175, 212
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 366, 404
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 196
MnlI CCTC 3 cut(s) 10, 355, 368
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 23, 126, 446
Msp20I TGGCCA 1 cut(s) 5
MspCI CTTAAG 1 cut(s) 125
MspI CCGG 2 cut(s) 12, 38
MspR9I CCNGG 2 cut(s) 169, 267
MvaI CCWGG 2 cut(s) 169, 267
NdeII GATC 4 cut(s) 297, 336, 434, 449
NlaIII CATG 3 cut(s) 74, 343, 397
NlaIV GGNNCC 1 cut(s) 166
NmuCI GTSAC 1 cut(s) 145
PciSI GCTCTTC 1 cut(s) 200
PfeI GAWTC 2 cut(s) 238, 305
PkrI GCNGC 2 cut(s) 123, 288
Psp124BI GAGCTC 1 cut(s) 212
Psp6I CCWGG 2 cut(s) 167, 265
PspGI CCWGG 2 cut(s) 167, 265
PspN4I GGNNCC 1 cut(s) 166
PspPI GGNCC 1 cut(s) 386
PstI CTGCAG 1 cut(s) 180
PstNI CAGNNNCTG 1 cut(s) 184
PsuI RGATCY 1 cut(s) 434
RsaI GTAC 1 cut(s) 418
RsaNI GTAC 1 cut(s) 417
SacI GAGCTC 1 cut(s) 212
SapI GCTCTTC 1 cut(s) 200
SaqAI TTAA 3 cut(s) 23, 126, 446
SatI GCNGC 2 cut(s) 122, 287
Sau3AI GATC 4 cut(s) 297, 336, 434, 449
Sau96I GGNCC 1 cut(s) 386
ScrFI CCNGG 2 cut(s) 169, 267
SduI GDGCHC 2 cut(s) 175, 212
SfaNI GCATC 1 cut(s) 102
SfcI CTRYAG 1 cut(s) 176
SgrAI CRCCGGYG 1 cut(s) 11
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
Sse9I AATT 2 cut(s) 366, 404
SsiI CCGC 1 cut(s) 9
SstI GAGCTC 1 cut(s) 212
StyD4I CCNGG 2 cut(s) 167, 265
TaaI ACNGT 1 cut(s) 400
TaqI TCGA 1 cut(s) 364
TasI AATT 2 cut(s) 366, 404
TfiI GAWTC 2 cut(s) 238, 305
Tru1I TTAA 3 cut(s) 23, 126, 446
Tru9I TTAA 3 cut(s) 23, 126, 446
TscAI CASTG 1 cut(s) 336
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 2 cut(s) 121, 286
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 2 cut(s) 59, 245
TspRI CASTG 1 cut(s) 336
Vha464I CTTAAG 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.